Protein ID | Ophcf2|00466 |
Gene name | |
Location | scaffold_01:1880826..1884095 |
Strand | + |
Gene length (bp) | 3269 |
Transcript length (bp) | 3018 |
Coding sequence length (bp) | 3018 |
Protein length (aa) | 1006 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF15411 | PH_10 | Pleckstrin homology domain | 2.0E-39 | 435 | 553 |
PF06395 | CDC24 | CDC24 Calponin | 5.5E-31 | 116 | 204 |
PF00621 | RhoGEF | RhoGEF domain | 4.6E-27 | 239 | 407 |
PF00564 | PB1 | PB1 domain | 2.8E-08 | 915 | 983 |
GO Term | Description | Terminal node |
---|---|---|
GO:0005085 | guanyl-nucleotide exchange factor activity | Yes |
GO:0005515 | protein binding | Yes |
GO:0060589 | nucleoside-triphosphatase regulator activity | No |
GO:0030695 | GTPase regulator activity | No |
GO:0098772 | molecular function regulator activity | No |
GO:0003674 | molecular_function | No |
GO:0005488 | binding | No |
GO:0030234 | enzyme regulator activity | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 12 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophcf2|00466 MAHAPLLRNNTVPVFESSFSSTGGLQQNSMSNAPRASQLSGTTAYAGSSSSSLNSLTSGGTVVPGQNGGPVVATT NIINQKADASRSLYQICVSLKQRLAQVPGFQPFLEQLDPTDPVDPLWNLLRTGYPLLTIYNALQPPEPLKVDDAT ASEAKKAKLAIFKFVQACLQELGVRGSESFVITDLLGNDTSGFVKVTQVVNYVLDLAESRGLLLQSEPSQDDKAA IAATGSQMSYRDHIVKELVDTERKYVQDLENLHDLKKALEQKGAVPGDIVHQIFLNINAILDFQRRFLIRVETTN SMPQNVQRWGAPFCFYEDAFDIYQPFIANQRKAAQLANQVFDKIQLSDHPVAADFNTLDGFLLKPMQRLVKYPLL LKDLCKKTEDPEIKEDLVLGCDAAERVLHKANEAVNRDLLDEALEDLINRVDDWKTHRVESFGKLLLHGVYSVIT GKSDQEKDYEVYLFECILLCCKEASATRNRDKKDRMRSSGSRIRNRSSKLQLKGRIFMTNVTDIVSLSKPGSHSV QIWWRGDPGVENFTIKFLNEENMKKWAAGLETQRKEMAPRLSSSVEGLAPDFSWTRDHAGGLENPYLNQDDDDDD ESGLHAAPPPQFPMSTQPMARRPSNTNLRQRSATNDSSQSIASIARAPPSRFQLPAHPGSLSLQTHTNGALSPAP RINDSYFSPVAESPASSRASAASGMFPYFSKSSAPPQPGWDDSNRYTAPAVPRAPSRDSSSPNPHNMSHRNPRGP SLPVMATQGQSAAQQQRSRSYSTPDVNATGIPRQRQPSQSNVPAVPGIPQHLHPAHDANIPRSQTGSPRGETPLR TSTQSPASQRERSHKHSNSLGGTMAQFPTQAAQARPNAASAGGGNYSLRVDSMSTNSRTVSPSLAAGSVTPQSAN DMPMPTQLKVRVNCEGGTYVTLVVAFNITYQSLTDRIDAKLARVMNSSIGKGMLKLRYRDEDGDLVSIESDDDIQ IAFMEWREGVRNMYTSGVGEIELFCVGEAT* |
Coding | >Ophcf2|00466 ATGGCCCATGCCCCGTTACTCAGAAACAACACCGTCCCGGTCTTCGAGTCCAGCTTCAGCAGCACCGGCGGCCTG CAACAGAACAGCATGAGCAATGCGCCGCGCGCCAGCCAGCTGTCGGGCACCACGGCATACGCGGGCTCGTCTTCT TCCTCGCTCAACTCCCTGACGAGCGGCGGAACCGTCGTCCCCGGTCAGAACGGCGGCCCCGTCGTCGCCACGACG AATATCATCAACCAAAAGGCCGACGCCTCGCGATCGCTCTACCAGATATGCGTCTCCCTGAAGCAGCGCCTCGCT CAGGTGCCAGGCTTCCAGCCCTTTCTCGAGCAGCTCGATCCGACCGATCCCGTCGACCCGCTGTGGAACTTGCTT CGCACCGGCTATCCCCTCTTGACCATATACAACGCCCTGCAGCCCCCCGAACCGCTCAAAGTCGATGACGCCACC GCCTCCGAGGCCAAAAAGGCCAAACTTGCCATCTTCAAGTTCGTTCAGGCGTGCTTACAGGAGCTCGGCGTTCGT GGGTCTGAGAGCTTCGTCATCACCGACTTGTTGGGAAATGACACGAGCGGCTTTGTCAAGGTGACCCAAGTCGTC AACTATGTTCTCGACCTCGCCGAGAGCCGCGGGCTCCTGCTCCAGAGCGAGCCGTCCCAAGACGACAAAGCCGCC ATCGCCGCTACAGGCTCCCAGATGAGCTACAGAGATCACATCGTCAAGGAGCTGGTAGATACAGAGCGCAAGTAT GTGCAGGACCTGGAGAATCTTCATGACCTGAAGAAGGCCCTCGAGCAAAAGGGCGCGGTACCCGGCGATATAGTC CACCAAATTTTCCTCAACATCAACGCTATCCTCGATTTCCAGCGTCGATTTCTCATCCGAGTCGAGACGACCAAC TCGATGCCCCAAAACGTCCAGCGCTGGGGCGCGCCCTTTTGCTTCTACGAGGATGCATTCGACATCTACCAACCG TTCATCGCGAACCAGAGAAAGGCTGCGCAGCTCGCCAACCAGGTCTTTGACAAGATCCAGTTGTCGGATCACCCA GTTGCTGCCGACTTCAACACCCTCGATGGCTTTCTTCTGAAACCCATGCAACGGCTGGTGAAGTATCCGCTGCTT CTCAAGGACCTTTGCAAAAAGACTGAAGATCCCGAGATCAAGGAAGATCTCGTGCTGGGCTGTGACGCCGCCGAG CGGGTGCTGCACAAGGCCAACGAAGCGGTGAACCGAGACCTCCTCGACGAAGCGCTCGAGGATTTGATCAACAGG GTAGACGACTGGAAAACCCATCGCGTGGAGTCGTTCGGAAAGCTATTGCTCCACGGCGTGTACAGCGTCATTACG GGCAAAAGCGATCAGGAAAAAGACTACGAGGTCTATCTATTCGAGTGCATCCTGCTGTGCTGCAAAGAGGCCTCG GCGACCAGGAACAGGGACAAGAAGGACAGGATGCGTTCTTCCGGATCTAGAATCCGCAACAGGAGCAGCAAGCTC CAGCTCAAGGGAAGAATATTCATGACCAACGTAACTGACATCGTCTCTCTTTCCAAGCCCGGTTCCCATAGCGTC CAGATCTGGTGGAGGGGCGATCCCGGCGTCGAGAACTTCACCATCAAGTTTCTGAACGAGGAGAACATGAAGAAG TGGGCGGCCGGGCTCGAGACGCAGCGCAAAGAAATGGCCCCTCGCCTCTCGTCCAGCGTCGAGGGCCTGGCTCCG GACTTCTCCTGGACGAGAGATCACGCGGGCGGACTCGAGAACCCATACCTGAATCAAGACGACGATGACGACGAC GAAAGCGGCTTGCATGCGGCGCCGCCACCACAGTTCCCCATGTCGACACAACCTATGGCGCGTCGGCCCTCCAAT ACGAACCTGAGGCAACGGTCCGCGACAAACGACAGCTCCCAGTCCATCGCCAGCATAGCCAGGGCGCCGCCTTCG CGCTTCCAGCTGCCCGCCCATCCCGGGTCGCTGAGCCTCCAAACACACACCAACGGCGCGCTGTCGCCAGCTCCC CGGATCAACGACAGCTACTTCTCCCCCGTGGCGGAGTCGCCGGCGTCGTCTCGAGCGAGCGCCGCCAGCGGCATG TTCCCCTATTTCTCCAAGTCGTCGGCGCCGCCGCAGCCGGGATGGGACGATAGCAACCGATACACGGCCCCGGCC GTACCGCGCGCCCCGTCTCGGGACAGCTCGTCGCCGAACCCGCACAACATGTCGCACCGAAACCCCCGTGGCCCT TCGCTACCGGTCATGGCCACACAGGGTCAGAGCGCCGCCCAACAGCAGCGGAGCCGATCCTACAGCACCCCCGAC GTCAACGCGACGGGCATCCCGCGGCAGCGCCAGCCGAGTCAGAGCAACGTGCCGGCCGTGCCGGGCATCCCGCAG CATCTGCATCCCGCGCACGACGCCAACATCCCGAGATCCCAGACCGGATCCCCCCGTGGCGAAACGCCGCTCCGG ACGAGCACGCAGAGTCCCGCCAGCCAACGGGAACGGTCGCACAAGCACTCCAACAGCCTGGGCGGGACTATGGCC CAATTCCCAACGCAGGCGGCCCAGGCCCGACCCAACGCGGCTTCGGCCGGTGGCGGCAACTATTCACTGCGCGTC GACTCCATGTCGACCAACTCGCGGACCGTTTCCCCGTCGCTAGCCGCTGGCTCAGTCACGCCCCAGTCGGCCAAC GACATGCCGATGCCGACGCAGCTCAAGGTCCGGGTCAACTGCGAAGGCGGCACCTACGTGACGCTCGTCGTCGCC TTCAACATCACATATCAGTCGCTGACCGATCGCATCGACGCCAAACTCGCGCGGGTCATGAACAGCAGCATCGGT AAGGGCATGCTTAAGCTGCGGTACCGCGACGAGGATGGCGACCTCGTCTCGATCGAGAGCGACGACGACATTCAG ATCGCTTTCATGGAGTGGCGAGAGGGCGTGCGCAACATGTACACGTCAGGCGTGGGAGAGATAGAACTCTTTTGC GTGGGCGAGGCGACGTGA |
Transcript | >Ophcf2|00466 ATGGCCCATGCCCCGTTACTCAGAAACAACACCGTCCCGGTCTTCGAGTCCAGCTTCAGCAGCACCGGCGGCCTG CAACAGAACAGCATGAGCAATGCGCCGCGCGCCAGCCAGCTGTCGGGCACCACGGCATACGCGGGCTCGTCTTCT TCCTCGCTCAACTCCCTGACGAGCGGCGGAACCGTCGTCCCCGGTCAGAACGGCGGCCCCGTCGTCGCCACGACG AATATCATCAACCAAAAGGCCGACGCCTCGCGATCGCTCTACCAGATATGCGTCTCCCTGAAGCAGCGCCTCGCT CAGGTGCCAGGCTTCCAGCCCTTTCTCGAGCAGCTCGATCCGACCGATCCCGTCGACCCGCTGTGGAACTTGCTT CGCACCGGCTATCCCCTCTTGACCATATACAACGCCCTGCAGCCCCCCGAACCGCTCAAAGTCGATGACGCCACC GCCTCCGAGGCCAAAAAGGCCAAACTTGCCATCTTCAAGTTCGTTCAGGCGTGCTTACAGGAGCTCGGCGTTCGT GGGTCTGAGAGCTTCGTCATCACCGACTTGTTGGGAAATGACACGAGCGGCTTTGTCAAGGTGACCCAAGTCGTC AACTATGTTCTCGACCTCGCCGAGAGCCGCGGGCTCCTGCTCCAGAGCGAGCCGTCCCAAGACGACAAAGCCGCC ATCGCCGCTACAGGCTCCCAGATGAGCTACAGAGATCACATCGTCAAGGAGCTGGTAGATACAGAGCGCAAGTAT GTGCAGGACCTGGAGAATCTTCATGACCTGAAGAAGGCCCTCGAGCAAAAGGGCGCGGTACCCGGCGATATAGTC CACCAAATTTTCCTCAACATCAACGCTATCCTCGATTTCCAGCGTCGATTTCTCATCCGAGTCGAGACGACCAAC TCGATGCCCCAAAACGTCCAGCGCTGGGGCGCGCCCTTTTGCTTCTACGAGGATGCATTCGACATCTACCAACCG TTCATCGCGAACCAGAGAAAGGCTGCGCAGCTCGCCAACCAGGTCTTTGACAAGATCCAGTTGTCGGATCACCCA GTTGCTGCCGACTTCAACACCCTCGATGGCTTTCTTCTGAAACCCATGCAACGGCTGGTGAAGTATCCGCTGCTT CTCAAGGACCTTTGCAAAAAGACTGAAGATCCCGAGATCAAGGAAGATCTCGTGCTGGGCTGTGACGCCGCCGAG CGGGTGCTGCACAAGGCCAACGAAGCGGTGAACCGAGACCTCCTCGACGAAGCGCTCGAGGATTTGATCAACAGG GTAGACGACTGGAAAACCCATCGCGTGGAGTCGTTCGGAAAGCTATTGCTCCACGGCGTGTACAGCGTCATTACG GGCAAAAGCGATCAGGAAAAAGACTACGAGGTCTATCTATTCGAGTGCATCCTGCTGTGCTGCAAAGAGGCCTCG GCGACCAGGAACAGGGACAAGAAGGACAGGATGCGTTCTTCCGGATCTAGAATCCGCAACAGGAGCAGCAAGCTC CAGCTCAAGGGAAGAATATTCATGACCAACGTAACTGACATCGTCTCTCTTTCCAAGCCCGGTTCCCATAGCGTC CAGATCTGGTGGAGGGGCGATCCCGGCGTCGAGAACTTCACCATCAAGTTTCTGAACGAGGAGAACATGAAGAAG TGGGCGGCCGGGCTCGAGACGCAGCGCAAAGAAATGGCCCCTCGCCTCTCGTCCAGCGTCGAGGGCCTGGCTCCG GACTTCTCCTGGACGAGAGATCACGCGGGCGGACTCGAGAACCCATACCTGAATCAAGACGACGATGACGACGAC GAAAGCGGCTTGCATGCGGCGCCGCCACCACAGTTCCCCATGTCGACACAACCTATGGCGCGTCGGCCCTCCAAT ACGAACCTGAGGCAACGGTCCGCGACAAACGACAGCTCCCAGTCCATCGCCAGCATAGCCAGGGCGCCGCCTTCG CGCTTCCAGCTGCCCGCCCATCCCGGGTCGCTGAGCCTCCAAACACACACCAACGGCGCGCTGTCGCCAGCTCCC CGGATCAACGACAGCTACTTCTCCCCCGTGGCGGAGTCGCCGGCGTCGTCTCGAGCGAGCGCCGCCAGCGGCATG TTCCCCTATTTCTCCAAGTCGTCGGCGCCGCCGCAGCCGGGATGGGACGATAGCAACCGATACACGGCCCCGGCC GTACCGCGCGCCCCGTCTCGGGACAGCTCGTCGCCGAACCCGCACAACATGTCGCACCGAAACCCCCGTGGCCCT TCGCTACCGGTCATGGCCACACAGGGTCAGAGCGCCGCCCAACAGCAGCGGAGCCGATCCTACAGCACCCCCGAC GTCAACGCGACGGGCATCCCGCGGCAGCGCCAGCCGAGTCAGAGCAACGTGCCGGCCGTGCCGGGCATCCCGCAG CATCTGCATCCCGCGCACGACGCCAACATCCCGAGATCCCAGACCGGATCCCCCCGTGGCGAAACGCCGCTCCGG ACGAGCACGCAGAGTCCCGCCAGCCAACGGGAACGGTCGCACAAGCACTCCAACAGCCTGGGCGGGACTATGGCC CAATTCCCAACGCAGGCGGCCCAGGCCCGACCCAACGCGGCTTCGGCCGGTGGCGGCAACTATTCACTGCGCGTC GACTCCATGTCGACCAACTCGCGGACCGTTTCCCCGTCGCTAGCCGCTGGCTCAGTCACGCCCCAGTCGGCCAAC GACATGCCGATGCCGACGCAGCTCAAGGTCCGGGTCAACTGCGAAGGCGGCACCTACGTGACGCTCGTCGTCGCC TTCAACATCACATATCAGTCGCTGACCGATCGCATCGACGCCAAACTCGCGCGGGTCATGAACAGCAGCATCGGT AAGGGCATGCTTAAGCTGCGGTACCGCGACGAGGATGGCGACCTCGTCTCGATCGAGAGCGACGACGACATTCAG ATCGCTTTCATGGAGTGGCGAGAGGGCGTGCGCAACATGTACACGTCAGGCGTGGGAGAGATAGAACTCTTTTGC GTGGGCGAGGCGACGTGA |
Gene | >Ophcf2|00466 ATGGCCCATGCCCCGTTACTCAGAAACAACACCGTCCCGGTCTTCGAGTCCAGCTTCAGCAGCACCGGCGGCCTG CAACAGAACAGCATGAGCAATGCGCCGCGCGCCAGCCAGCTGTCGGGCACCACGGCATACGCGGGCTCGTCTTCT TCCTCGCTCAACTCCCTGACGAGCGGCGGAACCGTCGTCCCCGGTCAGAACGGCGGCCCCGTCGTCGCCACGACG AATATCATCAACCAAAAGGCCGACGCCTCGCGATCGCTCTACCAGATATGCGTCTCCCTGAAGCAGCGCCTCGCT CAGGTGCCAGGCTTCCAGCCCTTTCTCGAGCAGCTCGATCCGACCGATCCCGTCGACCCGCTGTGGAACTTGCTT CGCACCGGCTATCCCCTCTTGACCATATACAACGCCCTGCAGCCCCCCGAACCGCTCAAAGTCGATGACGCCACC GCCTCCGAGGCCAAAAAGGCCAAACTTGCCATCTTCAAGTTCGTTCAGGCGTGCTTACAGGAGCTCGGCGTTCGT GGGTCTGAGAGCTTCGTCATCACCGACTTGTTGGGAAATGACACGAGCGGCTTTGTCAAGGTAAGCCCCTCGTCT TCGCCGCCCTCAGGATTGAGGCCATTTCCTCTCTCGGATCCACTGACCCGACCGTCAAACAACAGGTGACCCAAG TCGTCAACTATGTTCTCGACCTCGCCGAGAGCCGCGGGCTCCTGCTCCAGAGCGAGCCGTCCCAAGACGACAAAG CCGCCATCGCCGCTACAGGCTCCCAGATGAGCTACAGAGATCACATCGTCAAGGAGCTGGTAGATACAGAGCGCA AGTATGTGCAGGACCTGGAGAATCTTCATGACCTGAAGAAGGCCCTCGAGCAAAAGGGCGCGGTACCCGGCGATA TAGTCCACCAAATTTTCCTCAACATCAACGCTATCCTCGATTTCCAGCGTCGATTTCTCATCCGAGTCGAGACGA CCAACTCGATGCCCCAAAACGTCCAGCGCTGGGGCGCGCCCTTTTGCTTCTACGAGGATGCATTCGACATCTACC AACCGTTCATCGCGAACCAGAGAAAGGCTGCGCAGCTCGCCAACCAGGTCTTTGACAAGATCCAGTTGTCGGATC ACCCAGTTGCTGCCGACTTCAACACCCTCGATGGCTTTCTTCTGAAACCCATGCAACGGCTGGTGAAGTATCCGC TGCTTCTCAAGGTAAGCCTCGCGCCTCTCTGCCCTGGCTGTGGGAGGCGACGTGCTGACCTCCGACCCAGGACCT TTGCAAAAAGACTGAAGATCCCGAGATCAAGGAAGATCTCGTGCTGGGCTGTGACGCCGCCGAGCGGGTGCTGCA CAAGGCCAACGAAGCGGTGAACCGAGACCTCCTCGACGAAGCGCTCGAGGATTTGATCAACAGGGTAGACGACTG GAAAACCCATCGCGTGGAGTCGTTCGGAAAGCTATTGCTCCACGGCGTGTACAGCGTCATTACGGGCAAAAGCGA TCAGGAAAAAGACGTACGTCGGCAGCCAGCATCTTTTCGTTTCTCCAAACATGCTGACGTGGGCATCCAGTACGA GGTCTATCTATTCGAGTGCATCCTGCTGTGCTGCAAAGAGGCCTCGGCGACCAGGAACAGGGACAAGAAGGACAG GATGCGTTCTTCCGGATCTAGAATCCGCAACAGGAGCAGCAAGCTCCAGCTCAAGGGAAGAATATTCATGACCAA CGTAACTGACATCGTCTCTCTTTCCAAGCCCGGTGAGTGCGGTTCCATGACATCGAGTCCCGAGCATCTCTGACG ATGGCCGTGCAGGTTCCCATAGCGTCCAGATCTGGTGGAGGGGCGATCCCGGCGTCGAGAACTTCACCATCAAGT TTCTGAACGAGGAGAACATGAAGAAGTGGGCGGCCGGGCTCGAGACGCAGCGCAAAGAAATGGCCCCTCGCCTCT CGTCCAGCGTCGAGGGCCTGGCTCCGGACTTCTCCTGGACGAGAGATCACGCGGGCGGACTCGAGAACCCATACC TGAATCAAGACGACGATGACGACGACGAAAGCGGCTTGCATGCGGCGCCGCCACCACAGTTCCCCATGTCGACAC AACCTATGGCGCGTCGGCCCTCCAATACGAACCTGAGGCAACGGTCCGCGACAAACGACAGCTCCCAGTCCATCG CCAGCATAGCCAGGGCGCCGCCTTCGCGCTTCCAGCTGCCCGCCCATCCCGGGTCGCTGAGCCTCCAAACACACA CCAACGGCGCGCTGTCGCCAGCTCCCCGGATCAACGACAGCTACTTCTCCCCCGTGGCGGAGTCGCCGGCGTCGT CTCGAGCGAGCGCCGCCAGCGGCATGTTCCCCTATTTCTCCAAGTCGTCGGCGCCGCCGCAGCCGGGATGGGACG ATAGCAACCGATACACGGCCCCGGCCGTACCGCGCGCCCCGTCTCGGGACAGCTCGTCGCCGAACCCGCACAACA TGTCGCACCGAAACCCCCGTGGCCCTTCGCTACCGGTCATGGCCACACAGGGTCAGAGCGCCGCCCAACAGCAGC GGAGCCGATCCTACAGCACCCCCGACGTCAACGCGACGGGCATCCCGCGGCAGCGCCAGCCGAGTCAGAGCAACG TGCCGGCCGTGCCGGGCATCCCGCAGCATCTGCATCCCGCGCACGACGCCAACATCCCGAGATCCCAGACCGGAT CCCCCCGTGGCGAAACGCCGCTCCGGACGAGCACGCAGAGTCCCGCCAGCCAACGGGAACGGTCGCACAAGCACT CCAACAGCCTGGGCGGGACTATGGCCCAATTCCCAACGCAGGCGGCCCAGGCCCGACCCAACGCGGCTTCGGCCG GTGGCGGCAACTATTCACTGCGCGTCGACTCCATGTCGACCAACTCGCGGACCGTTTCCCCGTCGCTAGCCGCTG GCTCAGTCACGCCCCAGTCGGCCAACGACATGCCGATGCCGACGCAGCTCAAGGTCCGGGTCAACTGCGAAGGCG GCACCTACGTGACGCTCGTCGTCGCCTTCAACATCACATATCAGTCGCTGACCGATCGCATCGACGCCAAACTCG CGCGGGTCATGAACAGCAGCATCGGTAAGGGCATGCTTAAGCTGCGGTACCGCGACGAGGATGGCGACCTCGTCT CGATCGAGAGCGACGACGACATTCAGATCGCTTTCATGGAGTGGCGAGAGGGCGTGCGCAACATGTACACGTCAG GCGTGGGAGAGATAGAACTCTTTTGCGTGGGCGAGGCGACGTGA |