Protein ID | Ophcf2|00443 |
Gene name | |
Location | scaffold_01:1807537..1809706 |
Strand | - |
Gene length (bp) | 2169 |
Transcript length (bp) | 1983 |
Coding sequence length (bp) | 1983 |
Protein length (aa) | 661 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00995 | Sec1 | Sec1 family | 8.8E-127 | 31 | 643 |
GO Term | Description | Terminal node |
---|---|---|
GO:0016192 | vesicle-mediated transport | Yes |
GO:0051179 | localization | No |
GO:0008150 | biological_process | No |
GO:0006810 | transport | No |
GO:0051234 | establishment of localization | No |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Lysosome/Vacuole | Transmembrane domain | 0.3307 | 0.376 | 0.0231 | 0.162 | 0.1068 | 0.0053 | 0.3233 | 0.7462 | 0.1865 | 0.0021 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 597 | 619 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 4723 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophcf2|00443 MAPRTEFSSEQVRGKARKDFLYLLEGVRGKKNLVFDRSLVGPIGTIVKVTTLQEYGVDKFFILENDNVDSSQHNI VFVARGECGRHPETIAAQIKRVQRESQTSHDFHIFWVPRRTLVADQLLEEAGVLGDVSISELPFFFFPLERDVLS LELDDSFHDLYLSKDVTPNYLLARALMQVQHNHGLFPRIIGKGDNAKRVADLLCRLRQEALAGEDASDVGKTGLT PSTTIESVIIIDRQVDFVTPLLTQLTYEGLIDEVFGIQNNQAKVDTAVVGAPAQSSAAATSSQSRKRTIQLDSSD KLYEQLRDANFAIVGGLLNKVARRLQQVHSDYESKQKTKTLAELKEFVGRLPGYQQEHQSARIHTGLAEDIIKHT RSDQFKGLLEVQQNLAAGADPSSQFDEIEELIAREAPLRETLRLLCIYSCISEGVKPKEYDNFRRLILHGYGYQH ILTLNKLEKLQLFVSRSSPLAGVMSLTGGASASGSKTNYAILRKQLRLIVDEVQEDDPNDISYVYSGYAPLSIRL VQCVLQKQQLLSMTKGNGVSGASASSTAATQGWHGFDEAVRHVRGQTFYEIQKGEDKAVKARALLAGSGQKQTVF VVLVGGITFTEIAALRFLAKQEQERRNIVICTTSIISGNRMMDAAIEKESFASQGVDASG* |
Coding | >Ophcf2|00443 ATGGCGCCTCGCACCGAGTTCAGCTCCGAGCAGGTCCGCGGAAAGGCTCGAAAGGACTTTCTCTACCTGCTCGAG GGTGTCCGCGGCAAGAAGAACCTCGTGTTTGATCGCAGCCTCGTCGGGCCCATTGGGACCATCGTCAAGGTCACG ACGCTTCAGGAGTATGGCGTCGACAAGTTCTTTATCCTCGAAAACGACAATGTCGACTCGAGCCAGCACAATATC GTCTTTGTCGCTCGGGGCGAATGTGGCCGCCACCCCGAGACCATAGCGGCCCAGATCAAGCGAGTGCAGCGCGAG AGTCAGACTAGTCATGACTTTCACATCTTCTGGGTCCCGCGCCGGACCCTTGTCGCCGACCAGCTGCTCGAGGAG GCCGGTGTGCTCGGCGACGTGAGCATCTCGGAGCTTCCCTTCTTCTTCTTTCCGCTCGAAAGGGACGTTTTATCT CTAGAGCTCGACGACTCCTTTCACGACCTCTATCTATCCAAGGACGTCACACCCAACTACTTGCTGGCCCGAGCT CTGATGCAGGTTCAGCACAATCACGGCCTCTTCCCTCGTATCATCGGCAAGGGCGACAACGCCAAAAGAGTGGCC GACCTGCTATGTCGTCTGCGTCAGGAGGCTCTAGCCGGCGAGGACGCGTCTGACGTGGGCAAGACGGGCCTCACG CCGAGTACGACCATTGAGAGCGTCATCATCATCGATCGCCAAGTTGACTTTGTCACTCCGCTGCTAACACAGCTG ACGTACGAGGGTCTCATCGATGAAGTCTTTGGCATCCAGAATAATCAGGCCAAGGTCGATACGGCCGTGGTCGGC GCACCGGCTCAGTCATCGGCAGCCGCCACATCGTCGCAGAGTCGCAAACGAACCATTCAACTCGACTCTTCCGAC AAGCTGTACGAGCAGCTGCGAGATGCAAACTTTGCCATCGTTGGGGGGCTGCTCAACAAGGTCGCCCGCCGGCTG CAGCAAGTCCACAGCGACTACGAGAGCAAGCAAAAGACCAAGACGCTGGCCGAACTCAAAGAGTTCGTCGGACGG CTACCAGGCTACCAACAAGAGCACCAGAGCGCCAGAATTCACACCGGGCTGGCCGAGGACATCATCAAGCACACT CGCTCTGATCAGTTCAAAGGCCTTCTCGAGGTTCAGCAGAACCTCGCCGCGGGCGCAGACCCATCGTCCCAGTTC GATGAAATAGAGGAGCTCATCGCGCGTGAGGCGCCGCTGCGGGAGACGCTGAGGCTGCTGTGCATCTACTCGTGC ATTTCCGAAGGAGTGAAGCCCAAGGAGTACGATAATTTCCGACGTCTGATCCTGCATGGCTACGGCTACCAGCAC ATCCTCACGCTCAACAAGCTCGAGAAGCTTCAGCTCTTCGTATCGCGCTCGTCGCCGCTCGCTGGCGTAATGTCC CTGACTGGTGGTGCATCCGCCTCCGGGAGCAAGACTAATTACGCAATTCTGCGGAAGCAACTCCGCCTCATCGTG GATGAGGTGCAGGAAGACGATCCAAACGATATATCATATGTGTACAGCGGATACGCGCCGCTTTCGATTCGGCTA GTGCAATGCGTACTGCAAAAGCAGCAACTCTTGTCCATGACCAAAGGCAACGGAGTCTCCGGCGCCAGCGCCTCG TCCACGGCTGCCACACAGGGCTGGCATGGCTTCGACGAAGCTGTCAGGCACGTCCGCGGTCAGACCTTTTATGAG ATTCAGAAAGGCGAGGACAAGGCCGTCAAGGCGAGAGCGTTGCTGGCGGGCAGCGGTCAGAAGCAAACCGTTTTC GTCGTCTTGGTGGGCGGTATCACCTTTACGGAGATTGCCGCGCTCCGATTCCTGGCCAAGCAGGAACAAGAACGC CGAAATATTGTCATATGTACGACATCCATCATCAGCGGGAACCGGATGATGGACGCGGCCATCGAGAAGGAGTCG TTTGCGTCTCAAGGCGTCGATGCCTCTGGCTGA |
Transcript | >Ophcf2|00443 ATGGCGCCTCGCACCGAGTTCAGCTCCGAGCAGGTCCGCGGAAAGGCTCGAAAGGACTTTCTCTACCTGCTCGAG GGTGTCCGCGGCAAGAAGAACCTCGTGTTTGATCGCAGCCTCGTCGGGCCCATTGGGACCATCGTCAAGGTCACG ACGCTTCAGGAGTATGGCGTCGACAAGTTCTTTATCCTCGAAAACGACAATGTCGACTCGAGCCAGCACAATATC GTCTTTGTCGCTCGGGGCGAATGTGGCCGCCACCCCGAGACCATAGCGGCCCAGATCAAGCGAGTGCAGCGCGAG AGTCAGACTAGTCATGACTTTCACATCTTCTGGGTCCCGCGCCGGACCCTTGTCGCCGACCAGCTGCTCGAGGAG GCCGGTGTGCTCGGCGACGTGAGCATCTCGGAGCTTCCCTTCTTCTTCTTTCCGCTCGAAAGGGACGTTTTATCT CTAGAGCTCGACGACTCCTTTCACGACCTCTATCTATCCAAGGACGTCACACCCAACTACTTGCTGGCCCGAGCT CTGATGCAGGTTCAGCACAATCACGGCCTCTTCCCTCGTATCATCGGCAAGGGCGACAACGCCAAAAGAGTGGCC GACCTGCTATGTCGTCTGCGTCAGGAGGCTCTAGCCGGCGAGGACGCGTCTGACGTGGGCAAGACGGGCCTCACG CCGAGTACGACCATTGAGAGCGTCATCATCATCGATCGCCAAGTTGACTTTGTCACTCCGCTGCTAACACAGCTG ACGTACGAGGGTCTCATCGATGAAGTCTTTGGCATCCAGAATAATCAGGCCAAGGTCGATACGGCCGTGGTCGGC GCACCGGCTCAGTCATCGGCAGCCGCCACATCGTCGCAGAGTCGCAAACGAACCATTCAACTCGACTCTTCCGAC AAGCTGTACGAGCAGCTGCGAGATGCAAACTTTGCCATCGTTGGGGGGCTGCTCAACAAGGTCGCCCGCCGGCTG CAGCAAGTCCACAGCGACTACGAGAGCAAGCAAAAGACCAAGACGCTGGCCGAACTCAAAGAGTTCGTCGGACGG CTACCAGGCTACCAACAAGAGCACCAGAGCGCCAGAATTCACACCGGGCTGGCCGAGGACATCATCAAGCACACT CGCTCTGATCAGTTCAAAGGCCTTCTCGAGGTTCAGCAGAACCTCGCCGCGGGCGCAGACCCATCGTCCCAGTTC GATGAAATAGAGGAGCTCATCGCGCGTGAGGCGCCGCTGCGGGAGACGCTGAGGCTGCTGTGCATCTACTCGTGC ATTTCCGAAGGAGTGAAGCCCAAGGAGTACGATAATTTCCGACGTCTGATCCTGCATGGCTACGGCTACCAGCAC ATCCTCACGCTCAACAAGCTCGAGAAGCTTCAGCTCTTCGTATCGCGCTCGTCGCCGCTCGCTGGCGTAATGTCC CTGACTGGTGGTGCATCCGCCTCCGGGAGCAAGACTAATTACGCAATTCTGCGGAAGCAACTCCGCCTCATCGTG GATGAGGTGCAGGAAGACGATCCAAACGATATATCATATGTGTACAGCGGATACGCGCCGCTTTCGATTCGGCTA GTGCAATGCGTACTGCAAAAGCAGCAACTCTTGTCCATGACCAAAGGCAACGGAGTCTCCGGCGCCAGCGCCTCG TCCACGGCTGCCACACAGGGCTGGCATGGCTTCGACGAAGCTGTCAGGCACGTCCGCGGTCAGACCTTTTATGAG ATTCAGAAAGGCGAGGACAAGGCCGTCAAGGCGAGAGCGTTGCTGGCGGGCAGCGGTCAGAAGCAAACCGTTTTC GTCGTCTTGGTGGGCGGTATCACCTTTACGGAGATTGCCGCGCTCCGATTCCTGGCCAAGCAGGAACAAGAACGC CGAAATATTGTCATATGTACGACATCCATCATCAGCGGGAACCGGATGATGGACGCGGCCATCGAGAAGGAGTCG TTTGCGTCTCAAGGCGTCGATGCCTCTGGCTGA |
Gene | >Ophcf2|00443 ATGGCGCCTCGCACCGAGTTCAGCTCCGAGCAGGTCCGCGGAAAGGCTCGAAAGGACTTTCTCTACCTGCTCGAG GGTGTAAGTGAGGCTCACGGCTGTCTCGCGTCCTCCAGTCCGCTGATGGCTTCAGCTCGCAGGTCCGCGGCAAGA AGAACCTCGTGTTTGATCGCAGCCTCGTCGGGCCCATTGGGACCATCGTCAAGGTCACGACGCTTCAGGAGTATG GCGTCGACAAGTTCTTTATCCTCGAAAACGACAATGTCGACTCGAGCCAGCACAATATCGTCTTTGTCGCTCGGG GCGAATGTGGCCGCCACCCCGAGACCATAGCGGGTATGTATCACGGCCCTGTGAGCCGTCTGGCGGTATCAGAAT CAGACTGACGGTCAACGCTTCTGACCTAGCCCAGATCAAGCGAGTGCAGCGCGAGAGTCAGACTAGTCATGACTT TCACATCTTCTGGGTCCCGCGCCGGACCCTTGTCGCCGACCAGCTGCTCGAGGAGGCCGGTGTGCTCGGCGACGT GAGCATCTCGGAGCTTCCCTTCTTCTTCTTTCCGCTCGAAAGGGACGTTTTATCTCTAGAGCTCGACGACTCCTT TCACGACCTCTATCTATCCAAGGACGTCACACCCAACTACTTGCTGGCCCGAGCTCTGATGCAGGTTCAGCACAA TCACGGCCTCTTCCCTCGTATCATCGGCAAGGGCGACAACGCCAAAAGAGTGGCCGACCTGCTATGTCGTCTGCG TCAGGAGGCTCTAGCCGGCGAGGACGCGTCTGACGTGGGCAAGACGGGCCTCACGCCGAGTACGACCATTGAGAG CGTCATCATCATCGATCGCCAAGTTGACTTTGTCACTCCGCTGCTAACACAGCTGACGTACGAGGGTCTCATCGA TGAAGTCTTTGGCATCCAGAATAATCAGGCCAAGGTCGATACGGCCGTGGTCGGCGCACCGGCTCAGTCATCGGC AGCCGCCACATCGTCGCAGAGTCGCAAACGAACCATTCAACTCGACTCTTCCGACAAGCTGTACGAGCAGCTGCG AGATGCAAACTTTGCCATCGTTGGGGGGCTGCTCAACAAGGTCGCCCGCCGGCTGCAGCAAGTCCACAGCGACTA CGAGAGCAAGCAAAAGACCAAGACGCTGGCCGAACTCAAAGAGTTCGTCGGACGGCTACCAGGCTACCAACAAGA GCACCAGAGCGCCAGAATTCACACCGGGCTGGCCGAGGACATCATCAAGCACACTCGCTCTGATCAGTTCAAAGG CCTTCTCGAGGTTCAGCAGAACCTCGCCGCGGGCGCAGACCCATCGTCCCAGTTCGATGAAATAGAGGAGCTCAT CGCGCGTGAGGCGCCGCTGCGGGAGACGCTGAGGCTGCTGTGCATCTACTCGTGCATTTCCGAAGGAGTGAAGCC CAAGGAGTACGATAATTTCCGACGTCTGATCCTGCATGGCTACGGCTACCAGCACATCCTCACGCTCAACAAGCT CGAGAAGCTTCAGCTCTTCGTATCGCGCTCGTCGCCGCTCGCTGGCGTAATGTCCCTGACTGGTGGTGCATCCGC CTCCGGGAGCAAGACTAATTACGCAATTCTGCGGAAGCAACTCCGCCTCATCGTGGATGAGGTGCAGGAAGACGA TCCAAACGATATATCATATGTGTACAGCGGATACGCGCCGCTTTCGATTCGGCTAGTGCAATGCGTACTGCAAAA GCAGCAACTCTTGTCCATGACCAAAGGCAACGGAGTCTCCGGCGCCAGCGCCTCGTCCACGGCTGCCACACAGGG CTGGCATGGCTTCGACGAAGCTGTCAGGCACGTCCGCGGTCAGACCTTTTATGAGATTCAGAAAGGCGAGGACAA GGCCGTCAAGGCGAGAGCGTTGCTGGCGGGCAGCGGTCAGAAGCAAACCGTTTTCGTCGTCTTGGTGGGCGGTAT CACCTTTACGGAGATTGCCGCGCTCCGATTCCTGGCCAAGCAGGAACAAGGTAAGCAGATGGTCGGCTTCCGGTC GTCCAGGATTTCCGCTCTGACTGAAGAATAGAACGCCGAAATATTGTCATATGTACGACATCCATCATCAGCGGG AACCGGATGATGGACGCGGCCATCGAGAAGGAGTCGTTTGCGTCTCAAGGCGTCGATGCCTCTGGCTGA |