Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|00422
Gene name
Locationscaffold_01:1750382..1751833
Strand-
Gene length (bp)1451
Transcript length (bp)897
Coding sequence length (bp)897
Protein length (aa) 299

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.5E-15 88 156
PF13865 FoP_duplication C-terminal duplication domain of Friend of PRMT1 8.5E-06 223 277

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No
GO:0005488 binding No
GO:0097159 organic cyclic compound binding No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Nucleus Nuclear localization signal 0.5188 0.7863 0.0198 0.0243 0.0483 0.0073 0.0404 0.0066 0.0052 0.0031

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Click here for more information

Orthologs

Orthofinder run ID4
Orthogroup3497
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|2242
Ophiocordyceps australis map64 (Brazil) OphauB2|7646
Ophiocordyceps camponoti-floridani Ophcf2|00422 (this protein)
Ophiocordyceps camponoti-rufipedis Ophun1|7027
Ophiocordyceps kimflemingae Ophio5|6333
Ophiocordyceps subramaniannii Hirsu2|6681

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|00422
MADKMDRGLDDIIADSRITGPRNRRGRHDGRRNERQDYPRDGVRKSARNDGRSIDSEWVHDRFHERAPRGGPLPR
RRRDSPPSKGAKIRVENIHYDLGEDDLEELFARIGPVARLQLRYDRAGRSEGTAIVTYELKEDAQEAIRQFDGAN
ANGQPIQLTLLSGGPSRNAFDTAVMPGRPLAERITVPTARSRSFSPRRRRFDEEDATRKGIDRYIPDEDSRPRSP
MGQRRGGRRPGARREDQSSGRGGRDNGRSNPRLKKTQEELDAEMEDYFGGSSASAPTAPSKVVNGNDDIDMIE*
Coding >Ophcf2|00422
ATGGCCGATAAGATGGACCGTGGCCTCGATGACATCATCGCCGACAGCCGCATCACCGGCCCGCGTAACCGACGC
GGTCGTCACGACGGCCGTCGTAATGAACGTCAGGATTATCCTCGCGATGGTGTGAGAAAGTCCGCCCGAAACGAC
GGTCGAAGCATCGACAGCGAGTGGGTTCACGATCGTTTCCACGAGCGAGCCCCCCGTGGCGGTCCCCTCCCCCGA
CGTCGACGGGATTCCCCTCCTAGCAAGGGTGCCAAGATACGAGTTGAAAATATCCATTATGACCTCGGCGAAGAC
GACTTGGAAGAGCTGTTTGCAAGGATCGGTCCCGTCGCTCGACTGCAGCTGCGATACGACCGTGCGGGCCGATCT
GAAGGAACGGCAATCGTCACCTACGAGCTTAAGGAGGATGCTCAGGAGGCTATCCGACAGTTTGACGGAGCCAAC
GCCAACGGGCAACCTATTCAGTTGACTTTGTTGTCCGGCGGACCTTCGCGCAATGCTTTCGACACAGCCGTCATG
CCGGGTCGGCCTCTTGCCGAGCGCATCACTGTTCCAACTGCAAGATCGCGATCTTTCTCGCCGCGTCGACGCCGC
TTCGATGAGGAGGATGCTACTCGAAAGGGCATTGATAGGTACATTCCCGACGAGGACAGTCGTCCAAGGAGCCCC
ATGGGTCAGCGTCGTGGGGGGCGACGACCAGGCGCCAGACGCGAAGATCAGAGCAGCGGCCGCGGAGGACGTGAT
AACGGCCGAAGCAACCCGCGCCTCAAGAAGACGCAAGAAGAGCTGGACGCAGAGATGGAGGATTATTTCGGAGGC
AGCAGCGCTTCAGCCCCCACGGCACCGTCCAAAGTCGTCAACGGCAACGATGACATCGACATGATTGAATGA
Transcript >Ophcf2|00422
ATGGCCGATAAGATGGACCGTGGCCTCGATGACATCATCGCCGACAGCCGCATCACCGGCCCGCGTAACCGACGC
GGTCGTCACGACGGCCGTCGTAATGAACGTCAGGATTATCCTCGCGATGGTGTGAGAAAGTCCGCCCGAAACGAC
GGTCGAAGCATCGACAGCGAGTGGGTTCACGATCGTTTCCACGAGCGAGCCCCCCGTGGCGGTCCCCTCCCCCGA
CGTCGACGGGATTCCCCTCCTAGCAAGGGTGCCAAGATACGAGTTGAAAATATCCATTATGACCTCGGCGAAGAC
GACTTGGAAGAGCTGTTTGCAAGGATCGGTCCCGTCGCTCGACTGCAGCTGCGATACGACCGTGCGGGCCGATCT
GAAGGAACGGCAATCGTCACCTACGAGCTTAAGGAGGATGCTCAGGAGGCTATCCGACAGTTTGACGGAGCCAAC
GCCAACGGGCAACCTATTCAGTTGACTTTGTTGTCCGGCGGACCTTCGCGCAATGCTTTCGACACAGCCGTCATG
CCGGGTCGGCCTCTTGCCGAGCGCATCACTGTTCCAACTGCAAGATCGCGATCTTTCTCGCCGCGTCGACGCCGC
TTCGATGAGGAGGATGCTACTCGAAAGGGCATTGATAGGTACATTCCCGACGAGGACAGTCGTCCAAGGAGCCCC
ATGGGTCAGCGTCGTGGGGGGCGACGACCAGGCGCCAGACGCGAAGATCAGAGCAGCGGCCGCGGAGGACGTGAT
AACGGCCGAAGCAACCCGCGCCTCAAGAAGACGCAAGAAGAGCTGGACGCAGAGATGGAGGATTATTTCGGAGGC
AGCAGCGCTTCAGCCCCCACGGCACCGTCCAAAGTCGTCAACGGCAACGATGACATCGACATGATTGAATGA
Gene >Ophcf2|00422
ATGGCCGATAAGATGGACCGTGGCCTCGATGACATCATCGCCGACAGCGTGCGTTCTTTTCCGCCTCTCTGTTGT
CCGTCGGTCTTCGCTGACGCTTTTCTCGACTTGTTTGCTACAGCGCATCACCGGCCCGCGTAACCGACGCGGTCG
TCACGACGGCCGTCGTAATGAACGTCAGGATTATCCTCGCGATGGTGTGAGAAAGGTGAGCTCTTCGTCCCTCGT
CTTCGCCTCTCGTTTCTGGGCGTCGCTGATAGGCTCGTCTCTCGCAGGTTGGACTGTCCTCTCGCCTGCGGTAGT
GGTAGTCTTCGGATAGGACGCTTTCCCACCGCTCCTCCGTGTCTCGATCGCTTCACGGAGCTCGACGGAGATATG
GCCGGCGTTTCTGGCTGCGAATTTCATGGCTGACCAATGCGTGCTTTGTTCGAAACAGTCCGCCCGAAACGACGG
TCGAAGCATCGACAGGTCTGTTGCGGCCTCTGAACTTGTCTTTGCTGTGCTAAACTGCCCAGCGAGTGGGTTCAC
GATCGTTTCCACGAGCGAGGTCAGTCGGCTTCGTCTGTTGTTGCTGAACGATGACTGATTCGTGGCAGCCCCCCG
TGGCGGTCCCCTCCCCCGACGTCGACGGGATTCCCCTCCTAGCAAGTGAGTTTCGGTTTCAGGGCTCGCTGAGAT
TCATTCTGTTAACTCGCCATCTTCAGGGGTGCCAAGATACGAGTTGAAAATATCCATTATGACCTCGGCGAAGAC
GACTTGGAAGTATGCGTGCTTGAACTTCTCCGCTCGAGACTGAGCTGATCCGTTGTCAAGGAGCTGTTTGCAAGG
ATCGGTCCCGTCGCTCGACTGCAGCTGCGATACGACCGTGCGGGCCGATCTGAAGGAACGGCAATCGTCACCTAC
GAGCTTAAGGAGGATGCTCAGGAGGCTATCCGACAGTTTGACGGAGCCAACGCCAACGGTATGTGCTTACCACGA
GTGCTGTCTTTGATAATTTTTTACTAACCCGAGTAGGGCAACCTATTCAGTTGACTTTGTTGTCCGGCGGACCTT
CGCGCAATGCTTTCGACACAGCCGTCATGCCGGGTCGGCCTCTTGCCGAGCGCATCACTGTTCCAACTGCAAGAT
CGCGATCTTTCTCGCCGCGTCGACGCCGCTTCGATGAGGAGGATGCTACTCGAAAGGGCATTGATAGGTACATTC
CCGACGAGGACAGTCGTCCAAGGAGCCCCATGGGTCAGCGTCGTGGGGGGCGACGACCAGGCGCCAGACGCGAAG
ATCAGAGCAGCGGCCGCGGAGGACGTGATAACGGCCGAAGCAACCCGCGCCTCAAGAAGACGCAAGAAGAGCTGG
ACGCAGAGATGGAGGATTATTTCGGAGGCAGCAGCGCTTCAGCCCCCACGGCACCGTCCAAAGTCGTCAACGGCA
ACGATGACATCGACATGATTGAATGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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