Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophcf2\|00358
Gene name
Location	scaffold_01:1558757..1559680
Strand	-
Gene length (bp)	923
Transcript length (bp)	864
Coding sequence length (bp)	864
Protein length (aa)	288

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF06912	DUF1275	Protein of unknown function (DUF1275)	6.1E-43	65	269

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 25	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	111	130	19
2	143	162	19
3	172	191	19
4	231	248	17
5	252	274	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Fungus	Fungus in pure culture	49.41	25.44	73.38
Alive	In ants, during behavior modification	41.00	20.21	61.79
Dead	In ants, recently dead	38.87	19.10	58.65

Differential expression

Label1	Label2	Q-value	Significant difference
Alive	Fungus	0.428110	no
Alive	Dead	0.818939	no
Dead	Fungus	0.293065	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophcf2\|00358 MFCRLPLQAANHAPEKNSRAPESVSQEISSQTSAGSFWPLAPERSRLVGHFSDDVRSSLFAEAQLVLLTFCTGIQ DVTTFLDYHCFASNQTGNTVFLCIALIISQIEGDTFVTANVGMSLGVFLAAGWLTGQLSHVIGGRKRWWLVSCNL LQTALVFTVAGIQYRYGSSDRGPVALGVIALLAFAAGGQVVQSRSLRITEISTAMATAAWVDLVMDGKLFVLHNR PRNRRLAFLIALAVGSLVGAAVYRQLGSAAAIAISAAGKLLVTILFLFSPAEIRRRGGAAEV*
Coding	>Ophcf2\|00358 ATGTTCTGTCGCCTGCCTCTTCAGGCGGCAAATCACGCCCCAGAGAAGAACTCGAGGGCTCCCGAGTCCGTATCC CAGGAGATCTCGTCCCAAACCAGCGCCGGCTCCTTCTGGCCCCTTGCGCCGGAAAGGAGCCGGCTCGTCGGTCAC TTTTCCGACGACGTCCGCTCCTCGCTCTTCGCCGAGGCACAGCTTGTGCTGCTGACCTTTTGCACGGGAATTCAA GACGTCACCACCTTTCTAGACTATCACTGCTTCGCCTCGAACCAGACCGGCAACACCGTCTTCCTCTGCATCGCC CTCATCATCTCCCAGATCGAGGGCGACACCTTCGTGACGGCCAACGTCGGCATGTCCCTCGGCGTCTTCCTGGCC GCGGGATGGTTGACGGGCCAACTGAGCCACGTCATCGGTGGACGGAAGCGTTGGTGGCTGGTCTCGTGCAACCTC CTTCAGACTGCCCTGGTCTTCACCGTAGCCGGGATCCAGTACCGCTACGGCAGCTCCGATCGCGGACCCGTTGCC CTCGGCGTCATAGCCCTGTTGGCCTTTGCCGCGGGCGGGCAGGTGGTTCAGTCTCGCAGCCTGCGCATCACCGAG ATCAGCACCGCCATGGCGACGGCGGCTTGGGTTGACCTCGTCATGGACGGAAAGCTGTTTGTGCTGCACAACCGA CCGAGGAATCGTCGCCTCGCCTTCCTGATCGCCCTGGCCGTCGGATCTCTGGTTGGCGCCGCCGTCTACCGCCAG CTGGGCTCGGCGGCCGCCATTGCGATATCCGCGGCCGGAAAACTGCTCGTCACGATCCTCTTCCTGTTCTCGCCC GCTGAGATCCGGCGACGGGGGGGGGCAGCAGAGGTGTAA
Transcript	>Ophcf2\|00358 ATGTTCTGTCGCCTGCCTCTTCAGGCGGCAAATCACGCCCCAGAGAAGAACTCGAGGGCTCCCGAGTCCGTATCC CAGGAGATCTCGTCCCAAACCAGCGCCGGCTCCTTCTGGCCCCTTGCGCCGGAAAGGAGCCGGCTCGTCGGTCAC TTTTCCGACGACGTCCGCTCCTCGCTCTTCGCCGAGGCACAGCTTGTGCTGCTGACCTTTTGCACGGGAATTCAA GACGTCACCACCTTTCTAGACTATCACTGCTTCGCCTCGAACCAGACCGGCAACACCGTCTTCCTCTGCATCGCC CTCATCATCTCCCAGATCGAGGGCGACACCTTCGTGACGGCCAACGTCGGCATGTCCCTCGGCGTCTTCCTGGCC GCGGGATGGTTGACGGGCCAACTGAGCCACGTCATCGGTGGACGGAAGCGTTGGTGGCTGGTCTCGTGCAACCTC CTTCAGACTGCCCTGGTCTTCACCGTAGCCGGGATCCAGTACCGCTACGGCAGCTCCGATCGCGGACCCGTTGCC CTCGGCGTCATAGCCCTGTTGGCCTTTGCCGCGGGCGGGCAGGTGGTTCAGTCTCGCAGCCTGCGCATCACCGAG ATCAGCACCGCCATGGCGACGGCGGCTTGGGTTGACCTCGTCATGGACGGAAAGCTGTTTGTGCTGCACAACCGA CCGAGGAATCGTCGCCTCGCCTTCCTGATCGCCCTGGCCGTCGGATCTCTGGTTGGCGCCGCCGTCTACCGCCAG CTGGGCTCGGCGGCCGCCATTGCGATATCCGCGGCCGGAAAACTGCTCGTCACGATCCTCTTCCTGTTCTCGCCC GCTGAGATCCGGCGACGGGGGGGGGCAGCAGAGGTGTAA
Gene	>Ophcf2\|00358 ATGTTCTGTCGCCTGCCTCTTCAGGCGGCAAATCACGCCCCAGAGAAGAACTCGAGGGCTCCCGAGTCCGTATCC CAGGAGATCTCGTCCCAAACCAGCGCCGGCTCCTTCTGGCCCCTTGCGCCGGAAAGGAGCCGGCTCGTCGGTCAC TTTTCCGACGACGTCCGCTCCTCGCTCTTCGCCGAGGCACAGCTTGTGCTGCTGACCTTTTGCACGGGAATTCAA GGTGAAGAGGAGAGCTAGGCTTCGTGATAGTATGCGGAAGCTGACGCGGCCCAATGCCAGACGTCACCACCTTTC TAGACTATCACTGCTTCGCCTCGAACCAGACCGGCAACACCGTCTTCCTCTGCATCGCCCTCATCATCTCCCAGA TCGAGGGCGACACCTTCGTGACGGCCAACGTCGGCATGTCCCTCGGCGTCTTCCTGGCCGCGGGATGGTTGACGG GCCAACTGAGCCACGTCATCGGTGGACGGAAGCGTTGGTGGCTGGTCTCGTGCAACCTCCTTCAGACTGCCCTGG TCTTCACCGTAGCCGGGATCCAGTACCGCTACGGCAGCTCCGATCGCGGACCCGTTGCCCTCGGCGTCATAGCCC TGTTGGCCTTTGCCGCGGGCGGGCAGGTGGTTCAGTCTCGCAGCCTGCGCATCACCGAGATCAGCACCGCCATGG CGACGGCGGCTTGGGTTGACCTCGTCATGGACGGAAAGCTGTTTGTGCTGCACAACCGACCGAGGAATCGTCGCC TCGCCTTCCTGATCGCCCTGGCCGTCGGATCTCTGGTTGGCGCCGCCGTCTACCGCCAGCTGGGCTCGGCGGCCG CCATTGCGATATCCGCGGCCGGAAAACTGCTCGTCACGATCCTCTTCCTGTTCTCGCCCGCTGAGATCCGGCGAC GGGGGGGGGCAGCAGAGGTGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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