Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|00317
Gene name
Locationscaffold_01:1465271..1466288
Strand+
Gene length (bp)1017
Transcript length (bp)1017
Coding sequence length (bp)1017
Protein length (aa) 339

Overview

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05615 THOC7 Tho complex subunit 7 4.0E-39 14 158

GO

GO Term Description Terminal node
GO:0006397 mRNA processing Yes
GO:0000445 THO complex part of transcription export complex Yes
GO:0044238 primary metabolic process No
GO:0044237 cellular metabolic process No
GO:0006396 RNA processing No
GO:0009987 cellular process No
GO:0008152 metabolic process No
GO:0046483 heterocycle metabolic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0043170 macromolecule metabolic process No
GO:0032991 protein-containing complex No
GO:1901360 organic cyclic compound metabolic process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0071704 organic substance metabolic process No
GO:0005575 cellular_component No
GO:0006807 nitrogen compound metabolic process No
GO:0000347 THO complex No
GO:0016070 RNA metabolic process No
GO:0140513 nuclear protein-containing complex No
GO:0090304 nucleic acid metabolic process No
GO:0016071 mRNA metabolic process No
GO:0008150 biological_process No
GO:0034641 cellular nitrogen compound metabolic process No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Nucleus Nuclear localization signal 0.5128 0.7934 0.1466 0.0601 0.0793 0.001 0.0476 0.0973 0.1339 0.0219

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Click here for more information

Orthologs

Orthofinder run ID4
Orthogroup3657
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|1068
Ophiocordyceps australis map64 (Brazil) OphauB2|3944
Ophiocordyceps camponoti-floridani Ophcf2|00317 (this protein)
Ophiocordyceps camponoti-rufipedis Ophun1|3312
Ophiocordyceps kimflemingae Ophio5|1331
Ophiocordyceps subramaniannii Hirsu2|7068

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|00317
MASWGLLDDRSESDLHKTRLLNVEEKPLKRITKRLAAISSAVSRANGALEPEPSEKNGDFESSESLLIDVTHDFA
ALDSSIARFQFLHDASRRERERYATDQQRILAECQAVRENNGRLRGQLEAARATLAQRQKFDELAERITSNRLLR
PRDDQRVNLAKLEDECRELERESEAYGVTWRERRHQFNRIMEEGMMLRRLIRDEKEEVDRREGMNEDGDDDAVDA
DKDISSQTPRMNEATPQADMDGNNQSKPLGTTASSTPALTVTAPVATRRIEASETDTPARSDQAVEDAPPREDVE
MEDGEERPPAGTDDERDDRGTGTRGVESTEEENMVVDE*
Coding >Ophcf2|00317
ATGGCATCATGGGGCCTTCTGGACGACCGAAGCGAATCAGACCTTCACAAGACGAGGCTTCTCAACGTCGAGGAG
AAGCCCCTCAAGCGCATCACCAAACGACTAGCCGCCATCTCCTCAGCCGTATCGCGAGCCAACGGCGCCCTCGAG
CCGGAACCCTCAGAGAAGAATGGAGATTTCGAAAGCAGTGAATCTCTCCTCATCGACGTGACGCACGACTTCGCC
GCCCTGGACAGCAGCATCGCACGCTTCCAGTTCCTCCACGACGCGAGCCGTCGCGAGAGAGAGCGCTACGCGACC
GACCAGCAGCGCATCCTGGCAGAGTGTCAGGCAGTGCGGGAGAACAACGGCCGGCTACGCGGGCAGCTCGAGGCC
GCGCGCGCGACGCTCGCTCAGCGGCAGAAATTCGATGAACTGGCGGAGCGCATCACGTCGAATCGGCTACTCCGT
CCGCGCGATGACCAGCGCGTCAACCTCGCCAAGCTGGAGGACGAGTGTCGCGAGTTGGAGCGCGAGAGCGAGGCG
TATGGCGTTACCTGGAGGGAACGTCGTCATCAGTTCAATCGCATAATGGAGGAGGGAATGATGCTTCGTCGTCTC
ATTCGTGATGAGAAGGAGGAGGTCGATCGTCGAGAGGGTATGAATGAGGATGGCGATGATGATGCCGTCGACGCG
GACAAGGACATTTCTTCACAGACTCCCAGGATGAACGAAGCCACTCCGCAGGCCGACATGGACGGCAACAACCAG
TCCAAACCCCTCGGCACTACAGCTTCTTCAACCCCCGCCCTCACCGTCACCGCCCCCGTCGCAACCCGCCGAATC
GAGGCGAGCGAGACCGACACGCCCGCCCGCTCAGACCAGGCCGTCGAAGATGCCCCCCCCCGCGAAGACGTCGAA
ATGGAGGACGGCGAGGAGAGGCCACCGGCTGGGACGGACGACGAGCGAGACGATAGAGGAACAGGAACCCGTGGG
GTGGAAAGCACCGAGGAGGAAAACATGGTCGTCGACGAATGA
Transcript >Ophcf2|00317
ATGGCATCATGGGGCCTTCTGGACGACCGAAGCGAATCAGACCTTCACAAGACGAGGCTTCTCAACGTCGAGGAG
AAGCCCCTCAAGCGCATCACCAAACGACTAGCCGCCATCTCCTCAGCCGTATCGCGAGCCAACGGCGCCCTCGAG
CCGGAACCCTCAGAGAAGAATGGAGATTTCGAAAGCAGTGAATCTCTCCTCATCGACGTGACGCACGACTTCGCC
GCCCTGGACAGCAGCATCGCACGCTTCCAGTTCCTCCACGACGCGAGCCGTCGCGAGAGAGAGCGCTACGCGACC
GACCAGCAGCGCATCCTGGCAGAGTGTCAGGCAGTGCGGGAGAACAACGGCCGGCTACGCGGGCAGCTCGAGGCC
GCGCGCGCGACGCTCGCTCAGCGGCAGAAATTCGATGAACTGGCGGAGCGCATCACGTCGAATCGGCTACTCCGT
CCGCGCGATGACCAGCGCGTCAACCTCGCCAAGCTGGAGGACGAGTGTCGCGAGTTGGAGCGCGAGAGCGAGGCG
TATGGCGTTACCTGGAGGGAACGTCGTCATCAGTTCAATCGCATAATGGAGGAGGGAATGATGCTTCGTCGTCTC
ATTCGTGATGAGAAGGAGGAGGTCGATCGTCGAGAGGGTATGAATGAGGATGGCGATGATGATGCCGTCGACGCG
GACAAGGACATTTCTTCACAGACTCCCAGGATGAACGAAGCCACTCCGCAGGCCGACATGGACGGCAACAACCAG
TCCAAACCCCTCGGCACTACAGCTTCTTCAACCCCCGCCCTCACCGTCACCGCCCCCGTCGCAACCCGCCGAATC
GAGGCGAGCGAGACCGACACGCCCGCCCGCTCAGACCAGGCCGTCGAAGATGCCCCCCCCCGCGAAGACGTCGAA
ATGGAGGACGGCGAGGAGAGGCCACCGGCTGGGACGGACGACGAGCGAGACGATAGAGGAACAGGAACCCGTGGG
GTGGAAAGCACCGAGGAGGAAAACATGGTCGTCGACGAATGA
Gene >Ophcf2|00317
ATGGCATCATGGGGCCTTCTGGACGACCGAAGCGAATCAGACCTTCACAAGACGAGGCTTCTCAACGTCGAGGAG
AAGCCCCTCAAGCGCATCACCAAACGACTAGCCGCCATCTCCTCAGCCGTATCGCGAGCCAACGGCGCCCTCGAG
CCGGAACCCTCAGAGAAGAATGGAGATTTCGAAAGCAGTGAATCTCTCCTCATCGACGTGACGCACGACTTCGCC
GCCCTGGACAGCAGCATCGCACGCTTCCAGTTCCTCCACGACGCGAGCCGTCGCGAGAGAGAGCGCTACGCGACC
GACCAGCAGCGCATCCTGGCAGAGTGTCAGGCAGTGCGGGAGAACAACGGCCGGCTACGCGGGCAGCTCGAGGCC
GCGCGCGCGACGCTCGCTCAGCGGCAGAAATTCGATGAACTGGCGGAGCGCATCACGTCGAATCGGCTACTCCGT
CCGCGCGATGACCAGCGCGTCAACCTCGCCAAGCTGGAGGACGAGTGTCGCGAGTTGGAGCGCGAGAGCGAGGCG
TATGGCGTTACCTGGAGGGAACGTCGTCATCAGTTCAATCGCATAATGGAGGAGGGAATGATGCTTCGTCGTCTC
ATTCGTGATGAGAAGGAGGAGGTCGATCGTCGAGAGGGTATGAATGAGGATGGCGATGATGATGCCGTCGACGCG
GACAAGGACATTTCTTCACAGACTCCCAGGATGAACGAAGCCACTCCGCAGGCCGACATGGACGGCAACAACCAG
TCCAAACCCCTCGGCACTACAGCTTCTTCAACCCCCGCCCTCACCGTCACCGCCCCCGTCGCAACCCGCCGAATC
GAGGCGAGCGAGACCGACACGCCCGCCCGCTCAGACCAGGCCGTCGAAGATGCCCCCCCCCGCGAAGACGTCGAA
ATGGAGGACGGCGAGGAGAGGCCACCGGCTGGGACGGACGACGAGCGAGACGATAGAGGAACAGGAACCCGTGGG
GTGGAAAGCACCGAGGAGGAAAACATGGTCGTCGACGAATGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail