Protein ID | Ophcf2|00301 |
Gene name | |
Location | scaffold_01:1417307..1419344 |
Strand | + |
Gene length (bp) | 2037 |
Transcript length (bp) | 1755 |
Coding sequence length (bp) | 1755 |
Protein length (aa) | 585 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00328 | His_Phos_2 | Histidine phosphatase superfamily (branch 2) | 6.4E-43 | 167 | 522 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Lysosome/Vacuole|Golgi apparatus | Signal peptide|Transmembrane domain | 0.1935 | 0.154 | 0.5934 | 0.3505 | 0.0879 | 0.0061 | 0.4139 | 0.6315 | 0.6944 | 0.0492 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 46 | 68 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 2652 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophcf2|00301 MSQSNNVIKQGSVDYEPVHQDEEDPHSDRPAPLRRSSEAELRHLRFAVYLLAPCLAILAAFNIFQFWPSFESDGC SHKRSKVPQYFQTSPELWAGPTATGKPPFLAETISWAPTQTYVPNEPLETSVPVEGMAPGDENIFHLMGHLSPYK AAPGFGVEEYPLPEGAEIMQVQMLSRHGSRYPGTDSEVEQLAHRLGNASSSEFNTKGPLAFLKDWKYQLGLEILV SNGRKELFNSGILHSYMYGAMYNTGSKIIARTTTQDRMLKSAENWLAGFFGLDWTKNATIEVIIDDTGFNNSLSG ANNCPNAIPQTVGKAAAAVWMDKYLQNAVARFQNMTEGFNWTIQDVYAAQTMCPYETVALGSSKFCDLFTYEEWK GYNYAVNLYFAGAAAFNSPTGRAMGLGYQQEMVARLQNHTLGYSGSQINVTLDNNTETFPLNQTLYFDFSHDTTI VAALTAMGLVQFNESLPDTGPPPEQGWFVVSNMVPFGSRFDLEVIRTPKPVSAARDGYVEGGETRYVHLVLNQRT VPLGKSFPECDAERKDGWCELGVFLKIQESMPAKAKFDYACFGHYPPVSYGEVKDGAPP* |
Coding | >Ophcf2|00301 ATGAGCCAGTCCAACAACGTCATCAAGCAGGGCTCCGTCGACTACGAGCCCGTCCATCAAGATGAGGAGGATCCT CACTCGGACCGACCCGCCCCCCTGAGGAGGAGCTCCGAGGCGGAATTGCGCCATCTCAGATTCGCCGTCTACCTG CTGGCCCCGTGCTTGGCCATCCTGGCCGCCTTCAACATCTTCCAGTTCTGGCCTTCATTCGAGTCGGATGGATGC TCTCACAAGCGGTCCAAGGTGCCGCAGTACTTTCAGACGTCGCCAGAGCTATGGGCCGGACCGACGGCCACCGGC AAGCCGCCCTTCTTGGCTGAAACCATCTCGTGGGCACCGACCCAGACCTACGTGCCCAACGAGCCGCTGGAGACG TCGGTTCCCGTTGAGGGCATGGCACCCGGAGACGAGAACATCTTCCATCTCATGGGTCACTTGTCGCCGTATAAG GCCGCGCCCGGCTTCGGCGTCGAAGAGTACCCTCTGCCCGAAGGTGCCGAAATCATGCAGGTTCAGATGCTCTCT CGTCACGGATCCCGCTACCCCGGTACCGACTCCGAGGTCGAGCAGCTCGCCCACCGCCTAGGCAATGCTTCATCA TCCGAATTCAATACAAAGGGCCCTCTAGCCTTTCTCAAAGACTGGAAGTACCAGCTCGGGCTCGAGATCCTCGTG TCCAATGGCCGCAAGGAGCTCTTCAACTCGGGCATCTTGCACAGTTACATGTACGGGGCCATGTACAACACTGGT AGCAAGATTATTGCTCGCACCACGACGCAAGATCGAATGCTCAAGTCGGCCGAGAACTGGCTGGCCGGCTTCTTC GGCCTCGACTGGACCAAGAACGCCACCATCGAAGTCATCATTGATGACACCGGCTTCAACAACTCGCTCTCGGGC GCCAACAATTGCCCCAATGCGATACCCCAGACGGTCGGCAAGGCTGCTGCGGCCGTCTGGATGGATAAGTATCTT CAGAACGCCGTCGCTCGCTTCCAGAACATGACCGAGGGTTTCAACTGGACTATCCAAGACGTCTACGCTGCCCAG ACGATGTGCCCTTATGAGACTGTCGCCCTCGGATCCAGCAAGTTCTGCGACTTGTTTACATACGAAGAATGGAAG GGCTACAACTACGCCGTCAACCTGTACTTTGCCGGAGCGGCGGCTTTCAATAGTCCCACGGGTCGCGCCATGGGA CTCGGCTATCAGCAGGAGATGGTGGCGCGGCTACAGAACCATACGCTCGGCTATTCCGGCTCGCAGATCAACGTG ACGCTCGACAACAACACCGAGACCTTTCCGCTGAACCAGACGCTTTACTTTGACTTTTCCCACGACACCACCATC GTCGCCGCCTTGACGGCCATGGGCCTCGTCCAGTTCAACGAGTCTCTTCCGGACACGGGCCCTCCTCCGGAGCAG GGGTGGTTCGTAGTGTCCAACATGGTCCCATTCGGCTCCCGCTTCGACCTCGAGGTCATCAGGACGCCAAAGCCC GTCTCTGCCGCCCGAGACGGCTACGTGGAAGGCGGCGAGACGCGTTACGTTCACCTGGTACTGAACCAGCGCACC GTGCCCCTGGGCAAGAGCTTCCCCGAGTGCGACGCCGAACGCAAGGACGGCTGGTGCGAGCTGGGCGTCTTCCTC AAGATCCAGGAGAGCATGCCGGCCAAGGCCAAGTTCGACTATGCCTGCTTCGGCCACTATCCACCCGTCTCGTAC GGAGAGGTCAAAGACGGTGCTCCGCCGTGA |
Transcript | >Ophcf2|00301 ATGAGCCAGTCCAACAACGTCATCAAGCAGGGCTCCGTCGACTACGAGCCCGTCCATCAAGATGAGGAGGATCCT CACTCGGACCGACCCGCCCCCCTGAGGAGGAGCTCCGAGGCGGAATTGCGCCATCTCAGATTCGCCGTCTACCTG CTGGCCCCGTGCTTGGCCATCCTGGCCGCCTTCAACATCTTCCAGTTCTGGCCTTCATTCGAGTCGGATGGATGC TCTCACAAGCGGTCCAAGGTGCCGCAGTACTTTCAGACGTCGCCAGAGCTATGGGCCGGACCGACGGCCACCGGC AAGCCGCCCTTCTTGGCTGAAACCATCTCGTGGGCACCGACCCAGACCTACGTGCCCAACGAGCCGCTGGAGACG TCGGTTCCCGTTGAGGGCATGGCACCCGGAGACGAGAACATCTTCCATCTCATGGGTCACTTGTCGCCGTATAAG GCCGCGCCCGGCTTCGGCGTCGAAGAGTACCCTCTGCCCGAAGGTGCCGAAATCATGCAGGTTCAGATGCTCTCT CGTCACGGATCCCGCTACCCCGGTACCGACTCCGAGGTCGAGCAGCTCGCCCACCGCCTAGGCAATGCTTCATCA TCCGAATTCAATACAAAGGGCCCTCTAGCCTTTCTCAAAGACTGGAAGTACCAGCTCGGGCTCGAGATCCTCGTG TCCAATGGCCGCAAGGAGCTCTTCAACTCGGGCATCTTGCACAGTTACATGTACGGGGCCATGTACAACACTGGT AGCAAGATTATTGCTCGCACCACGACGCAAGATCGAATGCTCAAGTCGGCCGAGAACTGGCTGGCCGGCTTCTTC GGCCTCGACTGGACCAAGAACGCCACCATCGAAGTCATCATTGATGACACCGGCTTCAACAACTCGCTCTCGGGC GCCAACAATTGCCCCAATGCGATACCCCAGACGGTCGGCAAGGCTGCTGCGGCCGTCTGGATGGATAAGTATCTT CAGAACGCCGTCGCTCGCTTCCAGAACATGACCGAGGGTTTCAACTGGACTATCCAAGACGTCTACGCTGCCCAG ACGATGTGCCCTTATGAGACTGTCGCCCTCGGATCCAGCAAGTTCTGCGACTTGTTTACATACGAAGAATGGAAG GGCTACAACTACGCCGTCAACCTGTACTTTGCCGGAGCGGCGGCTTTCAATAGTCCCACGGGTCGCGCCATGGGA CTCGGCTATCAGCAGGAGATGGTGGCGCGGCTACAGAACCATACGCTCGGCTATTCCGGCTCGCAGATCAACGTG ACGCTCGACAACAACACCGAGACCTTTCCGCTGAACCAGACGCTTTACTTTGACTTTTCCCACGACACCACCATC GTCGCCGCCTTGACGGCCATGGGCCTCGTCCAGTTCAACGAGTCTCTTCCGGACACGGGCCCTCCTCCGGAGCAG GGGTGGTTCGTAGTGTCCAACATGGTCCCATTCGGCTCCCGCTTCGACCTCGAGGTCATCAGGACGCCAAAGCCC GTCTCTGCCGCCCGAGACGGCTACGTGGAAGGCGGCGAGACGCGTTACGTTCACCTGGTACTGAACCAGCGCACC GTGCCCCTGGGCAAGAGCTTCCCCGAGTGCGACGCCGAACGCAAGGACGGCTGGTGCGAGCTGGGCGTCTTCCTC AAGATCCAGGAGAGCATGCCGGCCAAGGCCAAGTTCGACTATGCCTGCTTCGGCCACTATCCACCCGTCTCGTAC GGAGAGGTCAAAGACGGTGCTCCGCCGTGA |
Gene | >Ophcf2|00301 ATGAGCCAGTCCAACAACGTCATCAAGCAGGGCTCCGTCGACTACGAGCCCGTCCATCAAGATGAGGAGGATCCT CACTCGGACCGACCCGCCCCCCTGAGGAGGAGCTCCGAGGCGGAATTGCGCCATCTCAGATTCGCCGTCTACCTG CTGGCCCCGTGCTTGGCCATCCTGGCCGCCTTCAACATCTTCCAGTTCTGGCCTTCATTCGAGTCGGATGGATGC TCTCACAAGCGGTCCAAGGTGCCGCAGTACTTTCAGACGTCGCCAGAGCTATGGGCCGGACCGACGGCCACCGGC AAGCCGCCCTTCTTGGCTGAAACCATCTCGTGGGCACCGACCCAGACCTACGTGCCCAACGAGCCGCTGGAGACG TCGGTTCCCGTTGAGGGCATGGCACCCGGAGACGAGAACATCTTCCATCTCATGGGTCACTTGTCGCCGTATAAG GCCGCGCCCGGCTTCGGCGTCGAAGAGTACCCTCTGCCCGAAGGTGCCGAAATCATGCAGGTTCAGATGCTCTCT CGTCACGGATCCCGCTACCCCGGTACCGACTCCGAGGTCGAGCAGCTCGCCCACCGCCTAGGCAATGCTTCATCA TCCGAATTCAATACAAAGGGCCCTCTAGCCTTTCTCAAAGACTGGAAGTACCAGCTCGGGCTCGAGATCCTCGTG TCCAATGGCCGCAAGGAGCTCTTCAACTCGGGTTCGTCCGTCAGCTCCCCGTGTGTTTGCTAGCAGTCGGCTAAC GAGGGCCAGGCATCTTGCACAGTTACATGTACGGGGCCATGTACAACACTGGTAGCAAGATTATTGCTCGCACCA CGGCAAGTCATGCATAGAAACTCGACCTCTGCGGCTGGCTTGCTGACCTCTTCCATAGACGCAAGATCGAATGCT CAAGTCGGCCGAGAACTGGCTGGCCGGCTTCTTCGGCCTCGACTGGTCCGTGACCCGTGTCCGTGTCAATTCCTT TCTCACATTGTCTCGCGCAGGACCAAGAACGCCACCATCGAAGTCATCATTGATGACACCGGCTTCAACAACTCG CTCTCGGGCGCCAACAATTGCCCCAATGCGATACCCCAGACGGTCGGCAAGGCTGCTGCGGCCGTCTGGATGGAT AAGTATCTTCAGAACGGTCCGCCATCCCTGCCCGATAGATTACGCCGTGGTGATGTTTGGAGCTGACGTCGATCA GCCGTCGCTCGCTTCCAGAACATGACCGAGGGTTTCAACTGGACTATCCAAGACGTCTACGCTGCCCAGACGATG TGCCCTTATGAGACTGTCGCCCTCGGATCCAGCAAGTTCTGCGACTTGTTTACATACGAAGAATGGAAGGGCTAC AACTACGCCGTCAACCTGTACTTTGCCGGAGCGGCGGCTTTCAATAGTCCCACGGGTGTGAGTCTTTTTGTCTGA TGGTCGTTTGGACTTTGACTTACGTGATGTGATGACTTCCACCAGCGCGCCATGGGACTCGGCTATCAGCAGGAG ATGGTGGCGCGGCTACAGAACCATACGCTCGGCTATTCCGGCTCGCAGATCAACGTGACGCTCGACAACAACACC GAGACCTTTCCGCTGAACCAGACGCTTTACTTTGACTTTTCCCACGACACCACCATCGTCGCCGCCTTGACGGCC ATGGGCCTCGTCCAGTTCAACGAGTCTCTTCCGGACACGGGCCCTCCTCCGGAGCAGGGGTGGTTCGTAGTGTCC AACATGGTCCCATTCGGCTCCCGCTTCGACCTCGAGGTCATCAGGACGCCAAAGCCCGTCTCTGCCGCCCGAGAC GGCTACGTGGAAGGCGGCGAGACGCGTTACGTTCACCTGGTACTGAACCAGCGCACCGTGCCCCTGGGCAAGAGC TTCCCCGAGTGCGACGCCGAACGCAAGGACGGCTGGTGCGAGCTGGGCGTCTTCCTCAAGATCCAGGAGAGCATG CCGGCCAAGGCCAAGTTCGACTATGCCTGCTTCGGCCACTATCCACCCGTCTCGTACGGAGAGGTCAAAGACGGT GCTCCGCCGTGA |