Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|00294
Gene name
Locationscaffold_01:1397910..1399009
Strand-
Gene length (bp)1099
Transcript length (bp)903
Coding sequence length (bp)903
Protein length (aa) 301

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02077 SURF4 SURF4 family 5.7E-97 37 300

GO

GO Term Description Terminal node
GO:0016021 integral component of membrane Yes
GO:0005575 cellular_component No
GO:0031224 intrinsic component of membrane No
GO:0110165 cellular anatomical entity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 12 0.45

Transmembrane Domains

Domain # Start End Length
1 94 116 22
2 123 142 19
3 146 165 19
4 185 204 19
5 208 230 22
6 237 256 19
7 271 293 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|00294
MSHRGPSGYGVGGPGPYGAPPSDESNGNILDQIRPYTSKVEDLLDNLSEPIKPYLPAIGRFLIVVTFLEDALRIV
TQWSDQLIYLRDYRHIPGGITHLFLIINVLAMLTCSGLVIIRKYSDYAVAGLMGVVVTQALGYGLIFDLNFFLRN
LSVMGGLLMVLSDSWVRKSKAFAGLPQIDEKDRKMWFQLAGRVLLIFLFIGFVWSGQWSVWRVLVCFMGAGACIM
VVVGFKAKFSAILLVVILSIFNLLVNNFWTLHEHHPHKDFAKYDFFQILSIVGGLLLLVNSGPGQFSIDEKKKVY
*
Coding >Ophcf2|00294
ATGTCCCACCGCGGTCCCTCGGGCTACGGCGTCGGCGGCCCCGGACCGTACGGCGCTCCCCCGTCGGACGAGAGC
AATGGCAATATACTTGATCAGATTCGTCCCTACACCAGTAAGGTGGAGGATCTCTTGGATAACCTGAGCGAGCCC
ATCAAGCCCTACCTACCAGCCATCGGCCGATTCCTCATCGTTGTCACCTTTCTCGAAGACGCGCTGCGCATCGTG
ACGCAATGGAGCGACCAGCTCATCTACCTGCGCGATTACCGACACATCCCCGGAGGCATCACGCACTTGTTCCTC
ATCATAAACGTCCTCGCCATGCTCACATGTTCGGGGCTCGTCATCATCCGCAAGTACTCGGACTACGCCGTCGCC
GGCCTCATGGGCGTCGTCGTCACCCAGGCTCTCGGTTACGGCCTCATCTTCGACCTCAACTTCTTCCTCCGGAAC
CTCTCCGTCATGGGCGGTCTGCTCATGGTCCTTTCCGATTCTTGGGTTCGCAAGTCCAAGGCCTTTGCCGGACTG
CCGCAGATTGATGAAAAGGACCGCAAGATGTGGTTCCAGCTAGCCGGCCGCGTCCTGCTCATCTTTCTCTTCATC
GGCTTCGTCTGGAGCGGCCAGTGGTCGGTGTGGAGGGTGCTCGTCTGCTTCATGGGCGCCGGCGCCTGCATCATG
GTCGTGGTGGGCTTCAAGGCCAAGTTCAGCGCCATTCTGCTCGTCGTCATCCTGAGCATCTTCAACCTGCTGGTC
AATAACTTTTGGACGCTGCACGAGCACCATCCCCACAAGGACTTTGCCAAGTACGACTTTTTCCAGATCCTGTCC
ATCGTCGGCGGCCTCCTGCTCCTCGTCAACAGCGGACCGGGCCAGTTCAGCATCGACGAGAAGAAGAAGGTGTAC
TAG
Transcript >Ophcf2|00294
ATGTCCCACCGCGGTCCCTCGGGCTACGGCGTCGGCGGCCCCGGACCGTACGGCGCTCCCCCGTCGGACGAGAGC
AATGGCAATATACTTGATCAGATTCGTCCCTACACCAGTAAGGTGGAGGATCTCTTGGATAACCTGAGCGAGCCC
ATCAAGCCCTACCTACCAGCCATCGGCCGATTCCTCATCGTTGTCACCTTTCTCGAAGACGCGCTGCGCATCGTG
ACGCAATGGAGCGACCAGCTCATCTACCTGCGCGATTACCGACACATCCCCGGAGGCATCACGCACTTGTTCCTC
ATCATAAACGTCCTCGCCATGCTCACATGTTCGGGGCTCGTCATCATCCGCAAGTACTCGGACTACGCCGTCGCC
GGCCTCATGGGCGTCGTCGTCACCCAGGCTCTCGGTTACGGCCTCATCTTCGACCTCAACTTCTTCCTCCGGAAC
CTCTCCGTCATGGGCGGTCTGCTCATGGTCCTTTCCGATTCTTGGGTTCGCAAGTCCAAGGCCTTTGCCGGACTG
CCGCAGATTGATGAAAAGGACCGCAAGATGTGGTTCCAGCTAGCCGGCCGCGTCCTGCTCATCTTTCTCTTCATC
GGCTTCGTCTGGAGCGGCCAGTGGTCGGTGTGGAGGGTGCTCGTCTGCTTCATGGGCGCCGGCGCCTGCATCATG
GTCGTGGTGGGCTTCAAGGCCAAGTTCAGCGCCATTCTGCTCGTCGTCATCCTGAGCATCTTCAACCTGCTGGTC
AATAACTTTTGGACGCTGCACGAGCACCATCCCCACAAGGACTTTGCCAAGTACGACTTTTTCCAGATCCTGTCC
ATCGTCGGCGGCCTCCTGCTCCTCGTCAACAGCGGACCGGGCCAGTTCAGCATCGACGAGAAGAAGAAGGTGTAC
TAG
Gene >Ophcf2|00294
ATGTCCCACCGCGGTCCCTCGGGCTACGGCGTCGGCGGCCCCGGACCGTACGGCGCTCCCCCGTCGGACGAGAGC
AATGGCAATATACTTGATCAGATTCGTCCCTACACCAGTAAGGTGGAGGATCTCTTGGATAACCTGAGCGAGCCC
ATCAAGCCGTCAGTCGCTTTCCCCATCTCTTGTGTAGCCTTTTCGGGCTGACAACTTGGGACAGCTACCTACCAG
CCATCGGCCGATTCCTCATCGTTGTCACCTTTCTCGAAGACGCGCTGCGCATCGTGACGCAATGGAGCGACCAGC
TCATCTACCTGCGCGATTACCGACACAGTACGTCTCCCCCGCCCCTCCCCCCCCCCCTTCCCCTGTTACACAACT
CTGGCTGACGTATCTGGGGGGGAAACAGTCCCCGGAGGCATCACGCACTTGTTCCTCATCATAAACGTCCTCGCC
ATGCTCACATGTTCGGGGCTCGTCATCATCCGCAAGTACTCGGACTACGCCGTCGCCGGCCTCATGGGCGTCGTC
GTCACCCAGGCTCTCGGTTACGGCCTCATCTTCGACCTCAACTTCTTCCTCCGGAACCTCTCCGTCATGGGCGGT
CTGCTCATGGTCCTTTCCGATTCTTGGGTTCGCAAGTCCAAGGCCTTTGCCGGACTGCCGCAGATTGATGAAAAG
GACCGCAAGATGTGGTTCCAGCTAGCCGGCCGCGTCCTGCTCATCTTTCTCTTCATCGGCTTCGTCTGGAGCGGC
CAGTGGTCGGTGTGGAGGGTGCTCGTCTGCTTCATGGGCGCCGGCGCCTGCATCATGGTCGTGGTGGGCTTCAAG
GCCAAGTTCAGCGCCATTCTGCTCGTCGTCATCCTGAGCATCTTCAACCTGCTGGTCAATAACTTTTGGACGGTG
AGTGACGACGGGTTCGTGACCGGGCAGGGCAACAGATGGATGCTAACTTGGAGAGCTCTAGCTGCACGAGCACCA
TCCCCACAAGGACTTTGCCAAGTACGACTTTTTCCAGATCCTGTCCATCGTCGGCGGCCTCCTGCTCCTCGTCAA
CAGCGGACCGGGCCAGTTCAGCATCGACGAGAAGAAGAAGGTGTACTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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