© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|00278 |
| Gene name | |
| Location | scaffold_01:1352843..1354222 |
| Strand | - |
| Gene length (bp) | 1379 |
| Transcript length (bp) | 1308 |
| Coding sequence length (bp) | 1308 |
| Protein length (aa) | 436 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00134 | Cyclin_N | Cyclin, N-terminal domain | 2.0E-10 | 87 | 217 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 40 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 108 | 130 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 67.24 | 38.32 | 96.16 |
| Alive | In ants, during behavior modification | 85.30 | 48.80 | 121.80 |
| Dead | In ants, recently dead | 102.66 | 58.20 | 147.11 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.209954 | no |
| Alive | Dead | 0.279417 | no |
| Dead | Fungus | 0.020205 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|00278 MASIDRYRPPREGYQPPSLPGATRNDQASRSPPRRREVPPAAPTPPQHSARTSPPRSGTQPGQQSPSPSARRGYQ WSFTPEEVSSSPSIIHGMPPAEERLRRAKGVNFIYQAGVVLDLPQITLWVAGVFFHRFFMRKSMVEEMGGVHHYN IAATALFLANKVEENCRKTKDIIIAVVKVAQKNAKLVIDEQSKEYWRWRDSILMYEESMLEHLTFDLMIDNPYRH LFELLGQLDIVHNKHLRQAAWAFCNDACLTALPLLIEARDVAISAIFFASVHTGQQVDDIHGEPWWKYLNGDEER CTRAIEVMRQFYTENPLRKQNPSLPSPPYDLENTRRRADALLSQPEALSSAGGTPMIDRASRSPAPPKTNGTDRG SETKEQEAKTAPTARGAEGADAVPSSTPKRREATDADTGSSQERPEKRTRLSEDEGEVEE* |
| Coding | >Ophcf2|00278 ATGGCGAGCATCGACCGCTATCGACCGCCACGCGAAGGCTACCAGCCTCCGAGCCTCCCGGGGGCGACCCGGAAC GATCAGGCGTCTCGATCCCCTCCTCGTCGGCGCGAGGTGCCTCCCGCAGCGCCGACGCCGCCCCAGCACAGCGCG CGGACTTCTCCACCTCGATCCGGAACCCAGCCGGGCCAGCAGTCGCCTTCGCCGTCGGCCAGGCGGGGCTACCAG TGGTCTTTCACGCCCGAGGAGGTGTCCAGCTCGCCGAGCATCATTCATGGCATGCCCCCGGCCGAGGAGAGGTTG CGCAGGGCCAAGGGCGTCAACTTCATCTACCAGGCCGGCGTCGTACTCGACCTGCCGCAAATCACTCTCTGGGTA GCGGGCGTCTTCTTCCATAGGTTTTTCATGCGTAAGAGCATGGTTGAGGAGATGGGCGGCGTTCATCATTATAAC ATCGCCGCCACCGCGCTCTTTCTCGCAAACAAGGTCGAGGAGAACTGCCGAAAAACCAAAGACATCATTATAGCG GTGGTCAAGGTGGCTCAGAAAAACGCCAAGCTGGTCATCGACGAGCAGAGCAAGGAATACTGGCGTTGGAGAGAC AGTATCCTCATGTACGAAGAGAGTATGCTTGAGCACCTCACCTTTGACTTGATGATTGACAATCCCTACCGGCAT CTCTTTGAGCTCCTCGGACAGCTCGACATTGTTCACAACAAGCACTTGAGACAGGCAGCATGGGCTTTCTGTAAC GACGCATGCCTGACTGCGCTGCCGCTCCTCATCGAGGCGAGAGACGTCGCCATCAGCGCCATCTTCTTTGCCAGC GTCCACACCGGCCAGCAGGTCGACGACATACACGGCGAGCCGTGGTGGAAGTACTTGAACGGCGACGAGGAGCGA TGCACTCGGGCCATCGAGGTGATGCGCCAGTTCTACACAGAGAACCCGCTTAGAAAGCAGAATCCGTCGCTGCCA TCACCCCCCTACGACCTTGAGAACACGAGACGGAGGGCAGACGCGCTCTTGAGCCAGCCCGAGGCGCTTTCATCG GCTGGCGGCACCCCCATGATCGATCGAGCCAGCCGCAGCCCGGCGCCGCCCAAGACGAACGGCACCGACAGGGGC TCCGAGACCAAAGAGCAGGAGGCGAAGACGGCGCCGACGGCCCGTGGAGCAGAGGGTGCCGACGCCGTCCCGAGT TCAACGCCCAAGAGGAGAGAGGCCACGGACGCAGACACCGGCTCAAGCCAGGAGAGGCCCGAGAAGCGGACCAGA CTGTCGGAGGATGAGGGCGAAGTGGAGGAGTGA |
| Transcript | >Ophcf2|00278 ATGGCGAGCATCGACCGCTATCGACCGCCACGCGAAGGCTACCAGCCTCCGAGCCTCCCGGGGGCGACCCGGAAC GATCAGGCGTCTCGATCCCCTCCTCGTCGGCGCGAGGTGCCTCCCGCAGCGCCGACGCCGCCCCAGCACAGCGCG CGGACTTCTCCACCTCGATCCGGAACCCAGCCGGGCCAGCAGTCGCCTTCGCCGTCGGCCAGGCGGGGCTACCAG TGGTCTTTCACGCCCGAGGAGGTGTCCAGCTCGCCGAGCATCATTCATGGCATGCCCCCGGCCGAGGAGAGGTTG CGCAGGGCCAAGGGCGTCAACTTCATCTACCAGGCCGGCGTCGTACTCGACCTGCCGCAAATCACTCTCTGGGTA GCGGGCGTCTTCTTCCATAGGTTTTTCATGCGTAAGAGCATGGTTGAGGAGATGGGCGGCGTTCATCATTATAAC ATCGCCGCCACCGCGCTCTTTCTCGCAAACAAGGTCGAGGAGAACTGCCGAAAAACCAAAGACATCATTATAGCG GTGGTCAAGGTGGCTCAGAAAAACGCCAAGCTGGTCATCGACGAGCAGAGCAAGGAATACTGGCGTTGGAGAGAC AGTATCCTCATGTACGAAGAGAGTATGCTTGAGCACCTCACCTTTGACTTGATGATTGACAATCCCTACCGGCAT CTCTTTGAGCTCCTCGGACAGCTCGACATTGTTCACAACAAGCACTTGAGACAGGCAGCATGGGCTTTCTGTAAC GACGCATGCCTGACTGCGCTGCCGCTCCTCATCGAGGCGAGAGACGTCGCCATCAGCGCCATCTTCTTTGCCAGC GTCCACACCGGCCAGCAGGTCGACGACATACACGGCGAGCCGTGGTGGAAGTACTTGAACGGCGACGAGGAGCGA TGCACTCGGGCCATCGAGGTGATGCGCCAGTTCTACACAGAGAACCCGCTTAGAAAGCAGAATCCGTCGCTGCCA TCACCCCCCTACGACCTTGAGAACACGAGACGGAGGGCAGACGCGCTCTTGAGCCAGCCCGAGGCGCTTTCATCG GCTGGCGGCACCCCCATGATCGATCGAGCCAGCCGCAGCCCGGCGCCGCCCAAGACGAACGGCACCGACAGGGGC TCCGAGACCAAAGAGCAGGAGGCGAAGACGGCGCCGACGGCCCGTGGAGCAGAGGGTGCCGACGCCGTCCCGAGT TCAACGCCCAAGAGGAGAGAGGCCACGGACGCAGACACCGGCTCAAGCCAGGAGAGGCCCGAGAAGCGGACCAGA CTGTCGGAGGATGAGGGCGAAGTGGAGGAGTGA |
| Gene | >Ophcf2|00278 ATGGCGAGCATCGACCGCTATCGACCGCCACGCGAAGGCTACCAGCCTCCGAGCCTCCCGGGGGCGACCCGGAAC GATCAGGCGTCTCGATCCCCTCCTCGTCGGCGCGAGGTGCCTCCCGCAGCGCCGACGCCGCCCCAGCACAGCGCG CGGACTTCTCCACCTCGATCCGGAACCCAGCCGGGCCAGCAGTCGCCTTCGCCGTCGGCCAGGCGGGGCTACCAG TGGTCTTTCACGCCCGAGGAGGTGTCCAGCTCGCCGAGCATCATTCATGGCATGCCCCCGGCCGAGGAGAGGTTG CGCAGGGCCAAGGGCGTCAACTTCATCTACCAGGCCGGCGTCGTACTCGACCTGCCGCAAATCACTCTCTGGGTA GCGGGCGTCTTCTTCCATAGGTTTTTCATGCGTAAGAGCATGGTTGAGGAGATGGGCGGCGTTCATCATTATGTT AGTTTTCTTCCCATTCTTTCTCTGGGCCGCGAATATGCTGACGAGGTTGGGCATCCGCCCTCGAACAGAACATCG CCGCCACCGCGCTCTTTCTCGCAAACAAGGTCGAGGAGAACTGCCGAAAAACCAAAGACATCATTATAGCGGTGG TCAAGGTGGCTCAGAAAAACGCCAAGCTGGTCATCGACGAGCAGAGCAAGGAATACTGGCGTTGGAGAGACAGTA TCCTCATGTACGAAGAGAGTATGCTTGAGCACCTCACCTTTGACTTGATGATTGACAATCCCTACCGGCATCTCT TTGAGCTCCTCGGACAGCTCGACATTGTTCACAACAAGCACTTGAGACAGGCAGCATGGGCTTTCTGTAACGACG CATGCCTGACTGCGCTGCCGCTCCTCATCGAGGCGAGAGACGTCGCCATCAGCGCCATCTTCTTTGCCAGCGTCC ACACCGGCCAGCAGGTCGACGACATACACGGCGAGCCGTGGTGGAAGTACTTGAACGGCGACGAGGAGCGATGCA CTCGGGCCATCGAGGTGATGCGCCAGTTCTACACAGAGAACCCGCTTAGAAAGCAGAATCCGTCGCTGCCATCAC CCCCCTACGACCTTGAGAACACGAGACGGAGGGCAGACGCGCTCTTGAGCCAGCCCGAGGCGCTTTCATCGGCTG GCGGCACCCCCATGATCGATCGAGCCAGCCGCAGCCCGGCGCCGCCCAAGACGAACGGCACCGACAGGGGCTCCG AGACCAAAGAGCAGGAGGCGAAGACGGCGCCGACGGCCCGTGGAGCAGAGGGTGCCGACGCCGTCCCGAGTTCAA CGCCCAAGAGGAGAGAGGCCACGGACGCAGACACCGGCTCAAGCCAGGAGAGGCCCGAGAAGCGGACCAGACTGT CGGAGGATGAGGGCGAAGTGGAGGAGTGA |