Protein ID | Ophcf2|00274 |
Gene name | |
Location | scaffold_01:1343658..1345065 |
Strand | - |
Gene length (bp) | 1407 |
Transcript length (bp) | 1407 |
Coding sequence length (bp) | 1407 |
Protein length (aa) | 469 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 25 | 0.5 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 7 | 29 | 22 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
Fungus | Fungus in pure culture | 148.65 | 81.49 | 215.81 |
Alive | In ants, during behavior modification | 181.14 | 96.64 | 265.65 |
Dead | In ants, recently dead | 163.40 | 88.71 | 238.09 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
Alive | Fungus | 0.361479 | no |
Alive | Dead | 0.600996 | no |
Dead | Fungus | 0.685287 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophcf2|00274 MADGTMSYLYTVGGYATLIGVGYALYHVSTHKANRRAATSASRGGKTPHQEPRKEDRKKKQRMESFASDTQEAAK AKARGKPVDEPNIQPKTTTRDASEEDDNREFARQLAKAQEGTKLASKTDGTKQREKSVKQSRANQASAKGDAPKV TESKVAVDDGDKATAEKATPDKVSAPLSTTAAAAPAEKSSAPSSTAGGDADDDRSPPSSPAAGPTDVSGVSDMLE PAPAAPSVLRITDSGTTQKPKQKAVKAPEKVETKKQRQNRKKAEAAKAAREAAEKERKVLEEKQRRAARIAEGRP AKDGSQFMAGEGARSAWAHGATNGSGGKASDAAALDGPLDTFGKPATMAPARQASPTGQQSHSGVKSDSSWISSL PSEEEQMEMLKDEADDWNTVKTKSKKAVKKVSSGSSADEAAPAPTKQPAAAAAASTARPTKTPAPSNFGGSFSAL TRADERIEISDIEEEWDV* |
Coding | >Ophcf2|00274 ATGGCTGACGGCACCATGAGCTATCTCTATACCGTCGGTGGCTATGCCACCCTCATTGGAGTCGGTTATGCTCTC TACCACGTCTCTACCCACAAGGCAAATCGACGGGCCGCCACCTCGGCCTCTCGCGGTGGCAAGACGCCTCATCAA GAGCCGCGCAAAGAGGACAGAAAGAAAAAGCAGAGGATGGAGAGCTTCGCATCCGATACTCAGGAGGCCGCCAAA GCAAAGGCCCGCGGCAAGCCGGTCGACGAGCCCAATATTCAGCCCAAAACGACTACCCGCGACGCGTCGGAAGAG GACGACAACCGCGAATTTGCCAGGCAGCTGGCCAAGGCCCAAGAAGGCACTAAGCTGGCCAGCAAGACCGACGGC ACCAAGCAGCGCGAGAAGTCGGTCAAACAGTCTCGCGCCAACCAGGCATCGGCCAAGGGCGACGCTCCCAAGGTT ACCGAGTCCAAGGTTGCTGTCGACGATGGCGACAAGGCCACTGCCGAAAAGGCTACCCCTGACAAGGTGTCGGCT CCTTTGTCTACGACGGCTGCTGCGGCTCCTGCCGAGAAAAGCTCAGCTCCCTCGTCGACGGCAGGTGGTGACGCC GACGACGACCGGTCTCCCCCTTCGTCTCCCGCAGCCGGTCCTACCGACGTCAGCGGCGTCAGCGACATGCTGGAG CCCGCCCCTGCTGCCCCCTCGGTCTTGCGCATTACCGACTCGGGCACCACCCAGAAGCCCAAGCAGAAGGCTGTC AAGGCTCCCGAAAAGGTCGAGACCAAGAAGCAGCGTCAGAACCGCAAGAAGGCCGAGGCGGCCAAGGCGGCTCGC GAAGCGGCCGAGAAGGAACGCAAGGTTCTAGAGGAGAAGCAGCGACGGGCTGCCCGTATCGCCGAAGGACGCCCT GCCAAGGACGGCTCCCAGTTCATGGCCGGCGAGGGTGCCCGTTCCGCCTGGGCGCACGGAGCCACCAACGGCAGC GGCGGTAAGGCGTCCGATGCCGCTGCCCTTGACGGGCCGCTGGACACTTTTGGGAAGCCGGCAACTATGGCGCCC GCTCGGCAGGCGTCGCCCACAGGCCAGCAGTCTCATTCCGGCGTCAAGTCGGACAGCTCTTGGATCTCGTCTCTC CCGTCGGAGGAGGAGCAGATGGAGATGCTCAAGGACGAGGCCGACGACTGGAACACGGTCAAGACCAAATCCAAG AAGGCCGTCAAGAAGGTCTCGTCCGGCTCCTCGGCGGACGAGGCGGCACCGGCTCCGACCAAGCAACCCGCGGCG GCGGCGGCGGCTTCCACCGCGAGGCCGACCAAGACGCCAGCCCCCTCCAACTTTGGCGGCTCATTTTCGGCCCTA ACGAGGGCGGACGAGCGGATCGAGATTTCCGACATTGAAGAGGAGTGGGACGTGTGA |
Transcript | >Ophcf2|00274 ATGGCTGACGGCACCATGAGCTATCTCTATACCGTCGGTGGCTATGCCACCCTCATTGGAGTCGGTTATGCTCTC TACCACGTCTCTACCCACAAGGCAAATCGACGGGCCGCCACCTCGGCCTCTCGCGGTGGCAAGACGCCTCATCAA GAGCCGCGCAAAGAGGACAGAAAGAAAAAGCAGAGGATGGAGAGCTTCGCATCCGATACTCAGGAGGCCGCCAAA GCAAAGGCCCGCGGCAAGCCGGTCGACGAGCCCAATATTCAGCCCAAAACGACTACCCGCGACGCGTCGGAAGAG GACGACAACCGCGAATTTGCCAGGCAGCTGGCCAAGGCCCAAGAAGGCACTAAGCTGGCCAGCAAGACCGACGGC ACCAAGCAGCGCGAGAAGTCGGTCAAACAGTCTCGCGCCAACCAGGCATCGGCCAAGGGCGACGCTCCCAAGGTT ACCGAGTCCAAGGTTGCTGTCGACGATGGCGACAAGGCCACTGCCGAAAAGGCTACCCCTGACAAGGTGTCGGCT CCTTTGTCTACGACGGCTGCTGCGGCTCCTGCCGAGAAAAGCTCAGCTCCCTCGTCGACGGCAGGTGGTGACGCC GACGACGACCGGTCTCCCCCTTCGTCTCCCGCAGCCGGTCCTACCGACGTCAGCGGCGTCAGCGACATGCTGGAG CCCGCCCCTGCTGCCCCCTCGGTCTTGCGCATTACCGACTCGGGCACCACCCAGAAGCCCAAGCAGAAGGCTGTC AAGGCTCCCGAAAAGGTCGAGACCAAGAAGCAGCGTCAGAACCGCAAGAAGGCCGAGGCGGCCAAGGCGGCTCGC GAAGCGGCCGAGAAGGAACGCAAGGTTCTAGAGGAGAAGCAGCGACGGGCTGCCCGTATCGCCGAAGGACGCCCT GCCAAGGACGGCTCCCAGTTCATGGCCGGCGAGGGTGCCCGTTCCGCCTGGGCGCACGGAGCCACCAACGGCAGC GGCGGTAAGGCGTCCGATGCCGCTGCCCTTGACGGGCCGCTGGACACTTTTGGGAAGCCGGCAACTATGGCGCCC GCTCGGCAGGCGTCGCCCACAGGCCAGCAGTCTCATTCCGGCGTCAAGTCGGACAGCTCTTGGATCTCGTCTCTC CCGTCGGAGGAGGAGCAGATGGAGATGCTCAAGGACGAGGCCGACGACTGGAACACGGTCAAGACCAAATCCAAG AAGGCCGTCAAGAAGGTCTCGTCCGGCTCCTCGGCGGACGAGGCGGCACCGGCTCCGACCAAGCAACCCGCGGCG GCGGCGGCGGCTTCCACCGCGAGGCCGACCAAGACGCCAGCCCCCTCCAACTTTGGCGGCTCATTTTCGGCCCTA ACGAGGGCGGACGAGCGGATCGAGATTTCCGACATTGAAGAGGAGTGGGACGTGTGA |
Gene | >Ophcf2|00274 ATGGCTGACGGCACCATGAGCTATCTCTATACCGTCGGTGGCTATGCCACCCTCATTGGAGTCGGTTATGCTCTC TACCACGTCTCTACCCACAAGGCAAATCGACGGGCCGCCACCTCGGCCTCTCGCGGTGGCAAGACGCCTCATCAA GAGCCGCGCAAAGAGGACAGAAAGAAAAAGCAGAGGATGGAGAGCTTCGCATCCGATACTCAGGAGGCCGCCAAA GCAAAGGCCCGCGGCAAGCCGGTCGACGAGCCCAATATTCAGCCCAAAACGACTACCCGCGACGCGTCGGAAGAG GACGACAACCGCGAATTTGCCAGGCAGCTGGCCAAGGCCCAAGAAGGCACTAAGCTGGCCAGCAAGACCGACGGC ACCAAGCAGCGCGAGAAGTCGGTCAAACAGTCTCGCGCCAACCAGGCATCGGCCAAGGGCGACGCTCCCAAGGTT ACCGAGTCCAAGGTTGCTGTCGACGATGGCGACAAGGCCACTGCCGAAAAGGCTACCCCTGACAAGGTGTCGGCT CCTTTGTCTACGACGGCTGCTGCGGCTCCTGCCGAGAAAAGCTCAGCTCCCTCGTCGACGGCAGGTGGTGACGCC GACGACGACCGGTCTCCCCCTTCGTCTCCCGCAGCCGGTCCTACCGACGTCAGCGGCGTCAGCGACATGCTGGAG CCCGCCCCTGCTGCCCCCTCGGTCTTGCGCATTACCGACTCGGGCACCACCCAGAAGCCCAAGCAGAAGGCTGTC AAGGCTCCCGAAAAGGTCGAGACCAAGAAGCAGCGTCAGAACCGCAAGAAGGCCGAGGCGGCCAAGGCGGCTCGC GAAGCGGCCGAGAAGGAACGCAAGGTTCTAGAGGAGAAGCAGCGACGGGCTGCCCGTATCGCCGAAGGACGCCCT GCCAAGGACGGCTCCCAGTTCATGGCCGGCGAGGGTGCCCGTTCCGCCTGGGCGCACGGAGCCACCAACGGCAGC GGCGGTAAGGCGTCCGATGCCGCTGCCCTTGACGGGCCGCTGGACACTTTTGGGAAGCCGGCAACTATGGCGCCC GCTCGGCAGGCGTCGCCCACAGGCCAGCAGTCTCATTCCGGCGTCAAGTCGGACAGCTCTTGGATCTCGTCTCTC CCGTCGGAGGAGGAGCAGATGGAGATGCTCAAGGACGAGGCCGACGACTGGAACACGGTCAAGACCAAATCCAAG AAGGCCGTCAAGAAGGTCTCGTCCGGCTCCTCGGCGGACGAGGCGGCACCGGCTCCGACCAAGCAACCCGCGGCG GCGGCGGCGGCTTCCACCGCGAGGCCGACCAAGACGCCAGCCCCCTCCAACTTTGGCGGCTCATTTTCGGCCCTA ACGAGGGCGGACGAGCGGATCGAGATTTCCGACATTGAAGAGGAGTGGGACGTGTGA |