Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|00267
Gene name
Locationscaffold_01:1327896..1328634
Strand+
Gene length (bp)738
Transcript length (bp)687
Coding sequence length (bp)687
Protein length (aa) 229

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PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.5

Transmembrane Domains

Domain # Start End Length
1 15 37 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Fungus Fungus in pure culture 11.84 3.58 20.10
Alive In ants, during behavior modification 34.74 15.33 54.14
Dead In ants, recently dead 32.89 14.32 51.47

Differential expression

Label1 Label2 Q-value Significant difference
Alive Fungus 0.000238 yes
Alive Dead 0.838636 no
Dead Fungus 0.000238 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|00267
MAVFFIGWELWQDMTFVLACCILLVFVIGIVKLWWTNRRLRKYEVIEEERRARLAQMQHCGIDRMHRDAIPFGVR
ALESGVEVEGIWVSRSNTPVVHDAKGKGKVVSSPLNECQHQAGPSPDPPSTPDETNHIHRLTHPRRLARPAFHAQ
PLPPLRPYDNQFPRDAAPYGTPDVYAHDDLDHLPIDVWAVGHELLGPITDADKIDVSPASPPLPRLGQSSKLRRK
PRT*
Coding >Ophcf2|00267
ATGGCCGTCTTCTTCATCGGCTGGGAGCTGTGGCAGGACATGACATTTGTGCTCGCCTGCTGTATCCTCCTCGTC
TTCGTCATCGGCATCGTGAAGCTGTGGTGGACAAATAGGCGGTTGCGAAAGTACGAAGTCATCGAGGAGGAGCGT
CGAGCTCGCCTCGCTCAGATGCAGCACTGCGGCATAGATCGCATGCACCGCGACGCTATTCCCTTTGGCGTCCGC
GCTCTCGAGAGCGGTGTCGAGGTTGAGGGCATCTGGGTTTCGCGATCCAACACGCCCGTTGTCCACGATGCCAAG
GGCAAGGGCAAGGTTGTGTCGTCACCGCTCAACGAATGCCAGCATCAGGCCGGCCCGTCGCCTGACCCGCCGTCG
ACGCCTGACGAGACCAACCACATCCACCGCTTGACACATCCGCGCCGTTTGGCGAGACCGGCTTTCCACGCGCAG
CCGTTGCCCCCCTTGAGACCTTATGATAACCAATTTCCCCGAGACGCTGCCCCCTACGGCACTCCCGACGTCTAC
GCCCACGACGACCTCGATCATCTCCCTATCGATGTCTGGGCCGTGGGACACGAGTTGTTGGGTCCGATTACCGAC
GCTGACAAGATTGATGTGTCGCCCGCCAGCCCACCGCTACCCAGACTGGGGCAATCGTCCAAGCTCCGCAGAAAG
CCGAGGACATGA
Transcript >Ophcf2|00267
ATGGCCGTCTTCTTCATCGGCTGGGAGCTGTGGCAGGACATGACATTTGTGCTCGCCTGCTGTATCCTCCTCGTC
TTCGTCATCGGCATCGTGAAGCTGTGGTGGACAAATAGGCGGTTGCGAAAGTACGAAGTCATCGAGGAGGAGCGT
CGAGCTCGCCTCGCTCAGATGCAGCACTGCGGCATAGATCGCATGCACCGCGACGCTATTCCCTTTGGCGTCCGC
GCTCTCGAGAGCGGTGTCGAGGTTGAGGGCATCTGGGTTTCGCGATCCAACACGCCCGTTGTCCACGATGCCAAG
GGCAAGGGCAAGGTTGTGTCGTCACCGCTCAACGAATGCCAGCATCAGGCCGGCCCGTCGCCTGACCCGCCGTCG
ACGCCTGACGAGACCAACCACATCCACCGCTTGACACATCCGCGCCGTTTGGCGAGACCGGCTTTCCACGCGCAG
CCGTTGCCCCCCTTGAGACCTTATGATAACCAATTTCCCCGAGACGCTGCCCCCTACGGCACTCCCGACGTCTAC
GCCCACGACGACCTCGATCATCTCCCTATCGATGTCTGGGCCGTGGGACACGAGTTGTTGGGTCCGATTACCGAC
GCTGACAAGATTGATGTGTCGCCCGCCAGCCCACCGCTACCCAGACTGGGGCAATCGTCCAAGCTCCGCAGAAAG
CCGAGGACATGA
Gene >Ophcf2|00267
ATGGCCGTCTTCTTCATCGGCTGGGAGCTGTGGCAGGACATGACATTTGTGAGACGCCTTGCCTCGTCTTGTTCT
TCTTATCGAGTCTGACACGACCAGGTGCTCGCCTGCTGTATCCTCCTCGTCTTCGTCATCGGCATCGTGAAGCTG
TGGTGGACAAATAGGCGGTTGCGAAAGTACGAAGTCATCGAGGAGGAGCGTCGAGCTCGCCTCGCTCAGATGCAG
CACTGCGGCATAGATCGCATGCACCGCGACGCTATTCCCTTTGGCGTCCGCGCTCTCGAGAGCGGTGTCGAGGTT
GAGGGCATCTGGGTTTCGCGATCCAACACGCCCGTTGTCCACGATGCCAAGGGCAAGGGCAAGGTTGTGTCGTCA
CCGCTCAACGAATGCCAGCATCAGGCCGGCCCGTCGCCTGACCCGCCGTCGACGCCTGACGAGACCAACCACATC
CACCGCTTGACACATCCGCGCCGTTTGGCGAGACCGGCTTTCCACGCGCAGCCGTTGCCCCCCTTGAGACCTTAT
GATAACCAATTTCCCCGAGACGCTGCCCCCTACGGCACTCCCGACGTCTACGCCCACGACGACCTCGATCATCTC
CCTATCGATGTCTGGGCCGTGGGACACGAGTTGTTGGGTCCGATTACCGACGCTGACAAGATTGATGTGTCGCCC
GCCAGCCCACCGCTACCCAGACTGGGGCAATCGTCCAAGCTCCGCAGAAAGCCGAGGACATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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