© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|00252 |
| Gene name | |
| Location | scaffold_01:1293905..1294734 |
| Strand | - |
| Gene length (bp) | 829 |
| Transcript length (bp) | 585 |
| Coding sequence length (bp) | 585 |
| Protein length (aa) | 195 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05832 | DUF846 | Eukaryotic protein of unknown function (DUF846) | 1.1E-50 | 19 | 159 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0110165 | cellular anatomical entity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 37 | 59 | 22 |
| 2 | 111 | 133 | 22 |
| 3 | 137 | 156 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 126.85 | 69.54 | 184.15 |
| Alive | In ants, during behavior modification | 115.01 | 61.93 | 168.08 |
| Dead | In ants, recently dead | 91.26 | 47.60 | 134.93 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.669614 | no |
| Alive | Dead | 0.200183 | no |
| Dead | Fungus | 0.101319 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|00252 MEAAGGSVAPGSLSWRLSSHPITLLTFLAFRTSSVVIYFLGLWVIKSMIMIFIITILLLAADFYYLKNIAGRRLV GLRWWNEVDVQTGDSKWVFESSEPGARVINATDSRFFWLALYVQPLLWVVMAILAIVRLQFLWLPLVVIALILTI MNSLAFSRCDKFSQASNMAGSAIGTSNLAGSIASNMFGRLFSRN* |
| Coding | >Ophcf2|00252 ATGGAGGCTGCGGGTGGGAGCGTGGCGCCCGGCTCGTTGAGCTGGAGGTTGAGTTCGCATCCCATCACGCTACTC ACCTTTCTCGCCTTCCGAACCTCCAGCGTCGTCATCTACTTCCTCGGCCTCTGGGTCATCAAAAGCATGATAATG ATCTTCATCATAACCATCCTCCTCCTCGCCGCCGATTTCTACTACCTCAAGAACATCGCAGGCCGAAGACTGGTG GGATTGCGGTGGTGGAACGAGGTCGACGTCCAAACCGGCGATTCGAAATGGGTCTTTGAGAGCAGCGAGCCCGGC GCCCGCGTCATCAACGCCACCGACTCGCGATTCTTCTGGCTGGCCCTCTATGTCCAGCCTTTGCTCTGGGTCGTC ATGGCTATCCTCGCCATCGTGAGGTTGCAGTTCTTATGGCTTCCCCTTGTTGTCATCGCCCTCATCCTCACAATC ATGAACTCGCTAGCCTTCTCCCGCTGCGATAAATTCAGCCAGGCTTCCAACATGGCCGGCTCAGCCATCGGAACG TCCAATCTCGCCGGTAGCATCGCCTCCAACATGTTCGGCCGCCTCTTCTCCCGCAACTGA |
| Transcript | >Ophcf2|00252 ATGGAGGCTGCGGGTGGGAGCGTGGCGCCCGGCTCGTTGAGCTGGAGGTTGAGTTCGCATCCCATCACGCTACTC ACCTTTCTCGCCTTCCGAACCTCCAGCGTCGTCATCTACTTCCTCGGCCTCTGGGTCATCAAAAGCATGATAATG ATCTTCATCATAACCATCCTCCTCCTCGCCGCCGATTTCTACTACCTCAAGAACATCGCAGGCCGAAGACTGGTG GGATTGCGGTGGTGGAACGAGGTCGACGTCCAAACCGGCGATTCGAAATGGGTCTTTGAGAGCAGCGAGCCCGGC GCCCGCGTCATCAACGCCACCGACTCGCGATTCTTCTGGCTGGCCCTCTATGTCCAGCCTTTGCTCTGGGTCGTC ATGGCTATCCTCGCCATCGTGAGGTTGCAGTTCTTATGGCTTCCCCTTGTTGTCATCGCCCTCATCCTCACAATC ATGAACTCGCTAGCCTTCTCCCGCTGCGATAAATTCAGCCAGGCTTCCAACATGGCCGGCTCAGCCATCGGAACG TCCAATCTCGCCGGTAGCATCGCCTCCAACATGTTCGGCCGCCTCTTCTCCCGCAACTGA |
| Gene | >Ophcf2|00252 ATGGAGGCTGCGGGTGGGAGCGTGGCGCCCGGCTCGTTGAGCTGGAGGTTGAGTTCGCATCCCATCACGCTACTC ACCTTTCTCGCCTTCCGAACCTGTCAGTTCCTGTCGTCGTCTCCCTGTCGTCGTCTCCCTCCTCCACCGTGACTA TCTACCTAGCTACCTACCCTGCCTAGCTGACAGCATGACAGCCAGCGTCGTCATCTACTTCCTCGGCCTCTGGGT CATCAAAAGCATGTCCGTCACACCCCTCCTCCCCTTCGCCCCCCCCCCCCCCCCCCCAAAACTCCACGGGCACGA CAGCTAAAGCCAAACCCCCGCAGGATAATGATCTTCATCATAACCATCCTCCTCCTCGCCGCCGATTTCTACTAC CTCAAGAACATCGCAGGCCGAAGACTGGTGGGATTGCGGTGGTGGAACGAGGTCGACGTCCAAACCGGCGATTCG AAATGGGTCTTTGAGAGCAGCGAGCCCGGCGCCCGCGTCATCAACGCCACCGACTCGCGATTCTTCTGGCTGGCC CTCTATGTCCAGCCTTTGCTCTGGGTCGTCATGGCTATCCTCGCCATCGTGAGGTTGCAGTTCTTATGGCTTCCC CTTGTTGGTTCGTACCCCCCTTCCCCCCGCACTCAGCTCCAATCAGGTCATGGAAATTGACAATGATAAAGTCAT CGCCCTCATCCTCACAATCATGAACTCGCTAGCCTTCTCCCGCTGCGATAAATTCAGCCAGGCTTCCAACATGGC CGGCTCAGCCATCGGAACGTCCAATCTCGCCGGTAGCATCGCCTCCAACATGTTCGGCCGCCTCTTCTCCCGCAA CTGA |