© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|00200 |
| Gene name | |
| Location | scaffold_01:1163626..1163899 |
| Strand | - |
| Gene length (bp) | 273 |
| Transcript length (bp) | 273 |
| Coding sequence length (bp) | 273 |
| Protein length (aa) | 91 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 24 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 22 | 17 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 227.65 | 101.34 | 353.96 |
| Alive | In ants, during behavior modification | 269.22 | 123.65 | 414.78 |
| Dead | In ants, recently dead | 252.86 | 116.10 | 389.62 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.526780 | no |
| Alive | Dead | 0.801210 | no |
| Dead | Fungus | 0.707656 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|00200 MRLSPSYPALLVFIMLFVIAVSARQSPQSSLYSSSANADQDDPSNIVTDDEDHLMRCAARDCKSDAICHLRSGCS KCFFAKLNTGMGICV* |
| Coding | >Ophcf2|00200 ATGAGACTCTCGCCATCCTATCCCGCTCTCCTGGTCTTCATCATGCTCTTCGTCATCGCTGTCTCGGCACGTCAG AGCCCGCAGTCGTCGCTTTACTCATCCTCTGCTAACGCTGACCAGGACGACCCGTCCAACATCGTCACTGATGAT GAAGACCACCTCATGCGCTGCGCAGCTAGGGACTGTAAAAGCGACGCCATCTGCCACCTTCGCAGCGGCTGCTCC AAGTGTTTCTTCGCAAAACTCAACACCGGCATGGGCATATGCGTCTAG |
| Transcript | >Ophcf2|00200 ATGAGACTCTCGCCATCCTATCCCGCTCTCCTGGTCTTCATCATGCTCTTCGTCATCGCTGTCTCGGCACGTCAG AGCCCGCAGTCGTCGCTTTACTCATCCTCTGCTAACGCTGACCAGGACGACCCGTCCAACATCGTCACTGATGAT GAAGACCACCTCATGCGCTGCGCAGCTAGGGACTGTAAAAGCGACGCCATCTGCCACCTTCGCAGCGGCTGCTCC AAGTGTTTCTTCGCAAAACTCAACACCGGCATGGGCATATGCGTCTAG |
| Gene | >Ophcf2|00200 ATGAGACTCTCGCCATCCTATCCCGCTCTCCTGGTCTTCATCATGCTCTTCGTCATCGCTGTCTCGGCACGTCAG AGCCCGCAGTCGTCGCTTTACTCATCCTCTGCTAACGCTGACCAGGACGACCCGTCCAACATCGTCACTGATGAT GAAGACCACCTCATGCGCTGCGCAGCTAGGGACTGTAAAAGCGACGCCATCTGCCACCTTCGCAGCGGCTGCTCC AAGTGTTTCTTCGCAAAACTCAACACCGGCATGGGCATATGCGTCTAG |