Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|00200
Gene name
Locationscaffold_01:1163626..1163899
Strand-
Gene length (bp)273
Transcript length (bp)273
Coding sequence length (bp)273
Protein length (aa) 91

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PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 24 0.45

Transmembrane Domains

Domain # Start End Length
1 5 22 17

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|00200
MRLSPSYPALLVFIMLFVIAVSARQSPQSSLYSSSANADQDDPSNIVTDDEDHLMRCAARDCKSDAICHLRSGCS
KCFFAKLNTGMGICV*
Coding >Ophcf2|00200
ATGAGACTCTCGCCATCCTATCCCGCTCTCCTGGTCTTCATCATGCTCTTCGTCATCGCTGTCTCGGCACGTCAG
AGCCCGCAGTCGTCGCTTTACTCATCCTCTGCTAACGCTGACCAGGACGACCCGTCCAACATCGTCACTGATGAT
GAAGACCACCTCATGCGCTGCGCAGCTAGGGACTGTAAAAGCGACGCCATCTGCCACCTTCGCAGCGGCTGCTCC
AAGTGTTTCTTCGCAAAACTCAACACCGGCATGGGCATATGCGTCTAG
Transcript >Ophcf2|00200
ATGAGACTCTCGCCATCCTATCCCGCTCTCCTGGTCTTCATCATGCTCTTCGTCATCGCTGTCTCGGCACGTCAG
AGCCCGCAGTCGTCGCTTTACTCATCCTCTGCTAACGCTGACCAGGACGACCCGTCCAACATCGTCACTGATGAT
GAAGACCACCTCATGCGCTGCGCAGCTAGGGACTGTAAAAGCGACGCCATCTGCCACCTTCGCAGCGGCTGCTCC
AAGTGTTTCTTCGCAAAACTCAACACCGGCATGGGCATATGCGTCTAG
Gene >Ophcf2|00200
ATGAGACTCTCGCCATCCTATCCCGCTCTCCTGGTCTTCATCATGCTCTTCGTCATCGCTGTCTCGGCACGTCAG
AGCCCGCAGTCGTCGCTTTACTCATCCTCTGCTAACGCTGACCAGGACGACCCGTCCAACATCGTCACTGATGAT
GAAGACCACCTCATGCGCTGCGCAGCTAGGGACTGTAAAAGCGACGCCATCTGCCACCTTCGCAGCGGCTGCTCC
AAGTGTTTCTTCGCAAAACTCAACACCGGCATGGGCATATGCGTCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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