Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophcf2\|00183
Gene name
Location	scaffold_01:1108696..1109890
Strand	-
Gene length (bp)	1194
Transcript length (bp)	1131
Coding sequence length (bp)	1131
Protein length (aa)	377

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF12400	STIMATE	STIMATE family	1.2E-40	155	282

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 48	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	20	42	22
2	62	84	22
3	97	119	22
4	157	179	22
5	217	239	22
6	254	276	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Fungus	Fungus in pure culture	29.25	14.48	44.03
Alive	In ants, during behavior modification	57.95	31.89	84.02
Dead	In ants, recently dead	57.72	31.90	83.53

Differential expression

Label1	Label2	Q-value	Significant difference
Alive	Fungus	0.000454	yes
Alive	Dead	0.987649	no
Dead	Fungus	0.000454	yes

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophcf2\|00183 MHPPSGEENAMASAPTSIMMMRTTTTTTTTTTAAAAMATALFATTTSSPMDAADSAQGECRLLGSFALLVQAALG ALALLSLVYKRWRERPQRPLKIWFFDVSKQVFGSVLVHVANIFMSMLTSGRFDMIRPEPSAAATQRLKERADDGY TPNPCSFYLLNLAIDTTVGIPILIILLRILTGLAAMTPLGKPSESIQSGNYGSPPNAWWWLKQSIIYFCGLFGMK LCVLVIFVVLPWISVVGDWALGWTAGNERLQIAFVMMIFPLVMNALQYYIIDSFIKKKETVDREGLPQQEPDEMR RHYDDETCRLRGPSTSEDEDEDEDDGDVHGENRDGGPASRRDYDPRFDGHAPTVIGIGPSQRASRIKLPTELYPK E*
Coding	>Ophcf2\|00183 ATGCACCCTCCATCAGGCGAGGAGAACGCCATGGCCTCGGCGCCTACAAGTATCATGATGATGAGGACGACGACG ACGACGACGACGACGACGACGGCGGCGGCTGCGATGGCAACGGCTCTCTTCGCCACGACGACTTCCTCCCCGATG GACGCCGCCGACTCGGCCCAGGGCGAATGCAGGCTCCTCGGCTCCTTCGCGCTGCTCGTACAGGCTGCCCTCGGG GCGCTGGCTTTGCTATCGCTCGTGTACAAGCGGTGGAGGGAAAGGCCGCAGCGGCCGCTCAAGATATGGTTCTTT GACGTGTCGAAACAGGTGTTTGGGTCGGTGTTGGTGCACGTGGCCAATATCTTCATGTCCATGTTGACGAGTGGA CGGTTTGATATGATCCGGCCTGAGCCTTCGGCTGCGGCTACGCAACGGTTGAAGGAGCGGGCTGACGATGGGTAC ACGCCTAACCCGTGTTCGTTCTATCTTCTTAACCTGGCCATCGACACGACGGTCGGGATCCCCATCCTCATCATC CTCCTCCGCATCCTCACCGGCCTCGCAGCCATGACCCCCCTCGGCAAACCCAGCGAATCAATCCAGTCAGGCAAC TACGGTAGCCCCCCCAACGCCTGGTGGTGGCTCAAGCAATCCATCATATACTTTTGCGGCCTGTTCGGCATGAAG CTCTGCGTCCTCGTCATCTTCGTCGTCCTCCCCTGGATCTCCGTCGTCGGCGACTGGGCTCTCGGCTGGACGGCC GGAAACGAGAGGTTGCAGATTGCCTTCGTCATGATGATCTTTCCGCTCGTCATGAACGCGCTGCAGTACTACATC ATCGATTCGTTTATTAAGAAGAAGGAGACGGTTGATAGGGAGGGGTTGCCGCAGCAGGAGCCGGATGAGATGCGG CGACATTACGATGATGAGACGTGTCGTCTGCGAGGTCCCAGCACCAGCGAAGACGAAGACGAAGACGAAGACGAT GGTGACGTCCACGGAGAGAATCGGGATGGAGGCCCAGCCAGTCGCCGAGATTACGACCCGCGCTTCGACGGCCAC GCTCCCACCGTCATCGGCATCGGCCCCAGCCAAAGAGCAAGCCGAATCAAGCTCCCGACGGAGCTCTATCCGAAG GAGTGA
Transcript	>Ophcf2\|00183 ATGCACCCTCCATCAGGCGAGGAGAACGCCATGGCCTCGGCGCCTACAAGTATCATGATGATGAGGACGACGACG ACGACGACGACGACGACGACGGCGGCGGCTGCGATGGCAACGGCTCTCTTCGCCACGACGACTTCCTCCCCGATG GACGCCGCCGACTCGGCCCAGGGCGAATGCAGGCTCCTCGGCTCCTTCGCGCTGCTCGTACAGGCTGCCCTCGGG GCGCTGGCTTTGCTATCGCTCGTGTACAAGCGGTGGAGGGAAAGGCCGCAGCGGCCGCTCAAGATATGGTTCTTT GACGTGTCGAAACAGGTGTTTGGGTCGGTGTTGGTGCACGTGGCCAATATCTTCATGTCCATGTTGACGAGTGGA CGGTTTGATATGATCCGGCCTGAGCCTTCGGCTGCGGCTACGCAACGGTTGAAGGAGCGGGCTGACGATGGGTAC ACGCCTAACCCGTGTTCGTTCTATCTTCTTAACCTGGCCATCGACACGACGGTCGGGATCCCCATCCTCATCATC CTCCTCCGCATCCTCACCGGCCTCGCAGCCATGACCCCCCTCGGCAAACCCAGCGAATCAATCCAGTCAGGCAAC TACGGTAGCCCCCCCAACGCCTGGTGGTGGCTCAAGCAATCCATCATATACTTTTGCGGCCTGTTCGGCATGAAG CTCTGCGTCCTCGTCATCTTCGTCGTCCTCCCCTGGATCTCCGTCGTCGGCGACTGGGCTCTCGGCTGGACGGCC GGAAACGAGAGGTTGCAGATTGCCTTCGTCATGATGATCTTTCCGCTCGTCATGAACGCGCTGCAGTACTACATC ATCGATTCGTTTATTAAGAAGAAGGAGACGGTTGATAGGGAGGGGTTGCCGCAGCAGGAGCCGGATGAGATGCGG CGACATTACGATGATGAGACGTGTCGTCTGCGAGGTCCCAGCACCAGCGAAGACGAAGACGAAGACGAAGACGAT GGTGACGTCCACGGAGAGAATCGGGATGGAGGCCCAGCCAGTCGCCGAGATTACGACCCGCGCTTCGACGGCCAC GCTCCCACCGTCATCGGCATCGGCCCCAGCCAAAGAGCAAGCCGAATCAAGCTCCCGACGGAGCTCTATCCGAAG GAGTGA
Gene	>Ophcf2\|00183 ATGCACCCTCCATCAGGCGAGGAGAACGCCATGGCCTCGGCGCCTACAAGTATCATGATGATGAGGACGACGACG ACGACGACGACGACGACGACGGCGGCGGCTGCGATGGCAACGGCTCTCTTCGCCACGACGACTTCCTCCCCGATG GACGCCGCCGACTCGGCCCAGGGCGAATGCAGGCTCCTCGGCTCCTTCGCGCTGCTCGTACAGGCTGCCCTCGGG GCGCTGGCTTTGCTATCGCTCGTGTACAAGCGGTGGAGGGAAAGGCCGCAGCGGCCGCTCAAGATATGGTTCTTT GACGTGTCGAAACAGGTGTTTGGGTCGGTGTTGGTGCACGTGGCCAATATCTTCATGTCCATGTTGACGAGTGGA CGGTTTGATATGATCCGGCCTGAGCCTTCGGCTGCGGCTACGCAACGGTTGAAGGAGCGGGCTGACGATGGGTAC ACGCCTAACCCGTGTTCGTTCTATCTTCTTAACCTGGCCATCGACGTGAGTCTCTTTTTACTTGGCAATCCTGTA ATCCTATCATCATGTCCTCTCTAACAAGAGCAGACGACGGTCGGGATCCCCATCCTCATCATCCTCCTCCGCATC CTCACCGGCCTCGCAGCCATGACCCCCCTCGGCAAACCCAGCGAATCAATCCAGTCAGGCAACTACGGTAGCCCC CCCAACGCCTGGTGGTGGCTCAAGCAATCCATCATATACTTTTGCGGCCTGTTCGGCATGAAGCTCTGCGTCCTC GTCATCTTCGTCGTCCTCCCCTGGATCTCCGTCGTCGGCGACTGGGCTCTCGGCTGGACGGCCGGAAACGAGAGG TTGCAGATTGCCTTCGTCATGATGATCTTTCCGCTCGTCATGAACGCGCTGCAGTACTACATCATCGATTCGTTT ATTAAGAAGAAGGAGACGGTTGATAGGGAGGGGTTGCCGCAGCAGGAGCCGGATGAGATGCGGCGACATTACGAT GATGAGACGTGTCGTCTGCGAGGTCCCAGCACCAGCGAAGACGAAGACGAAGACGAAGACGATGGTGACGTCCAC GGAGAGAATCGGGATGGAGGCCCAGCCAGTCGCCGAGATTACGACCCGCGCTTCGACGGCCACGCTCCCACCGTC ATCGGCATCGGCCCCAGCCAAAGAGCAAGCCGAATCAAGCTCCCGACGGAGCTCTATCCGAAGGAGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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