© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|00181 |
| Gene name | |
| Location | scaffold_01:1104207..1104739 |
| Strand | + |
| Gene length (bp) | 532 |
| Transcript length (bp) | 462 |
| Coding sequence length (bp) | 462 |
| Protein length (aa) | 154 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12273 | RCR | Chitin synthesis regulation, resistance to Congo red | 5.4E-19 | 22 | 151 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 15 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 20 | 42 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 262.51 | 148.87 | 376.14 |
| Alive | In ants, during behavior modification | 127.08 | 61.55 | 192.62 |
| Dead | In ants, recently dead | 168.57 | 92.02 | 245.12 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.000238 | yes |
| Alive | Dead | 0.131133 | no |
| Dead | Fungus | 0.022286 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|00181 MAVECFNGVCRRRRPWLNWGIWTFLGLLVVVFLTVFFLFACIARRRRRRGAQPMYGTGWMAPPNKYGGPEAGYHP QQQQPPPQGYGQAGFAPPPPAYGQPQAQYPQSTGTNFHPNDGYYGDGSQQQHGVQPPATAYQPHNGPYSPPPGPP PGK* |
| Coding | >Ophcf2|00181 ATGGCGGTCGAATGCTTCAACGGTGTTTGTCGGAGACGCAGGCCTTGGCTTAACTGGGGGATCTGGACGTTTCTA GGACTTCTCGTTGTTGTCTTTCTCACCGTCTTCTTCCTCTTTGCATGTATCGCCCGTCGTCGTCGTCGTCGCGGC GCGCAGCCCATGTATGGCACAGGATGGATGGCGCCGCCCAATAAATACGGAGGTCCCGAGGCCGGATATCACCCG CAGCAGCAGCAGCCGCCGCCGCAGGGCTACGGACAGGCTGGATTCGCGCCACCGCCGCCGGCATACGGACAACCG CAGGCGCAGTATCCTCAGTCGACGGGCACCAACTTTCACCCCAACGACGGGTACTACGGCGATGGGTCGCAGCAG CAGCATGGGGTGCAGCCGCCGGCTACGGCGTACCAGCCTCATAACGGGCCGTATTCGCCGCCGCCGGGGCCGCCG CCGGGCAAGTGA |
| Transcript | >Ophcf2|00181 ATGGCGGTCGAATGCTTCAACGGTGTTTGTCGGAGACGCAGGCCTTGGCTTAACTGGGGGATCTGGACGTTTCTA GGACTTCTCGTTGTTGTCTTTCTCACCGTCTTCTTCCTCTTTGCATGTATCGCCCGTCGTCGTCGTCGTCGCGGC GCGCAGCCCATGTATGGCACAGGATGGATGGCGCCGCCCAATAAATACGGAGGTCCCGAGGCCGGATATCACCCG CAGCAGCAGCAGCCGCCGCCGCAGGGCTACGGACAGGCTGGATTCGCGCCACCGCCGCCGGCATACGGACAACCG CAGGCGCAGTATCCTCAGTCGACGGGCACCAACTTTCACCCCAACGACGGGTACTACGGCGATGGGTCGCAGCAG CAGCATGGGGTGCAGCCGCCGGCTACGGCGTACCAGCCTCATAACGGGCCGTATTCGCCGCCGCCGGGGCCGCCG CCGGGCAAGTGA |
| Gene | >Ophcf2|00181 ATGGCGGTCGAATGCTTCAACGGTGTTTGTCGGAGACGCAGGCCTTGGCTTAACTGGGGGATCTGGACGTTTCTA GGACTTCTCGTTGTTGTCTTTCTCACCGTCTTCTTCCTCTTTGCGTGAGTGGCGAGCATTGTCTGGTATCTTGAC GGGTTTGACTGACGATGATGGGTGGGGGCGGGATCACAGATGTATCGCCCGTCGTCGTCGTCGTCGCGGCGCGCA GCCCATGTATGGCACAGGATGGATGGCGCCGCCCAATAAATACGGAGGTCCCGAGGCCGGATATCACCCGCAGCA GCAGCAGCCGCCGCCGCAGGGCTACGGACAGGCTGGATTCGCGCCACCGCCGCCGGCATACGGACAACCGCAGGC GCAGTATCCTCAGTCGACGGGCACCAACTTTCACCCCAACGACGGGTACTACGGCGATGGGTCGCAGCAGCAGCA TGGGGTGCAGCCGCCGGCTACGGCGTACCAGCCTCATAACGGGCCGTATTCGCCGCCGCCGGGGCCGCCGCCGGG CAAGTGA |