Protein ID | Ophcf2|00181 |
Gene name | |
Location | scaffold_01:1104207..1104739 |
Strand | + |
Gene length (bp) | 532 |
Transcript length (bp) | 462 |
Coding sequence length (bp) | 462 |
Protein length (aa) | 154 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF12273 | RCR | Chitin synthesis regulation, resistance to Congo red | 5.4E-19 | 22 | 151 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cell membrane|Lysosome/Vacuole | Signal peptide|Transmembrane domain | 0.1608 | 0.2068 | 0.122 | 0.6509 | 0.1081 | 0.0019 | 0.3614 | 0.7165 | 0.222 | 0.0105 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 20 | 42 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 659 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophcf2|00181 MAVECFNGVCRRRRPWLNWGIWTFLGLLVVVFLTVFFLFACIARRRRRRGAQPMYGTGWMAPPNKYGGPEAGYHP QQQQPPPQGYGQAGFAPPPPAYGQPQAQYPQSTGTNFHPNDGYYGDGSQQQHGVQPPATAYQPHNGPYSPPPGPP PGK* |
Coding | >Ophcf2|00181 ATGGCGGTCGAATGCTTCAACGGTGTTTGTCGGAGACGCAGGCCTTGGCTTAACTGGGGGATCTGGACGTTTCTA GGACTTCTCGTTGTTGTCTTTCTCACCGTCTTCTTCCTCTTTGCATGTATCGCCCGTCGTCGTCGTCGTCGCGGC GCGCAGCCCATGTATGGCACAGGATGGATGGCGCCGCCCAATAAATACGGAGGTCCCGAGGCCGGATATCACCCG CAGCAGCAGCAGCCGCCGCCGCAGGGCTACGGACAGGCTGGATTCGCGCCACCGCCGCCGGCATACGGACAACCG CAGGCGCAGTATCCTCAGTCGACGGGCACCAACTTTCACCCCAACGACGGGTACTACGGCGATGGGTCGCAGCAG CAGCATGGGGTGCAGCCGCCGGCTACGGCGTACCAGCCTCATAACGGGCCGTATTCGCCGCCGCCGGGGCCGCCG CCGGGCAAGTGA |
Transcript | >Ophcf2|00181 ATGGCGGTCGAATGCTTCAACGGTGTTTGTCGGAGACGCAGGCCTTGGCTTAACTGGGGGATCTGGACGTTTCTA GGACTTCTCGTTGTTGTCTTTCTCACCGTCTTCTTCCTCTTTGCATGTATCGCCCGTCGTCGTCGTCGTCGCGGC GCGCAGCCCATGTATGGCACAGGATGGATGGCGCCGCCCAATAAATACGGAGGTCCCGAGGCCGGATATCACCCG CAGCAGCAGCAGCCGCCGCCGCAGGGCTACGGACAGGCTGGATTCGCGCCACCGCCGCCGGCATACGGACAACCG CAGGCGCAGTATCCTCAGTCGACGGGCACCAACTTTCACCCCAACGACGGGTACTACGGCGATGGGTCGCAGCAG CAGCATGGGGTGCAGCCGCCGGCTACGGCGTACCAGCCTCATAACGGGCCGTATTCGCCGCCGCCGGGGCCGCCG CCGGGCAAGTGA |
Gene | >Ophcf2|00181 ATGGCGGTCGAATGCTTCAACGGTGTTTGTCGGAGACGCAGGCCTTGGCTTAACTGGGGGATCTGGACGTTTCTA GGACTTCTCGTTGTTGTCTTTCTCACCGTCTTCTTCCTCTTTGCGTGAGTGGCGAGCATTGTCTGGTATCTTGAC GGGTTTGACTGACGATGATGGGTGGGGGCGGGATCACAGATGTATCGCCCGTCGTCGTCGTCGTCGCGGCGCGCA GCCCATGTATGGCACAGGATGGATGGCGCCGCCCAATAAATACGGAGGTCCCGAGGCCGGATATCACCCGCAGCA GCAGCAGCCGCCGCCGCAGGGCTACGGACAGGCTGGATTCGCGCCACCGCCGCCGGCATACGGACAACCGCAGGC GCAGTATCCTCAGTCGACGGGCACCAACTTTCACCCCAACGACGGGTACTACGGCGATGGGTCGCAGCAGCAGCA TGGGGTGCAGCCGCCGGCTACGGCGTACCAGCCTCATAACGGGCCGTATTCGCCGCCGCCGGGGCCGCCGCCGGG CAAGTGA |