Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|00179
Gene name
Locationscaffold_01:1100181..1100517
Strand-
Gene length (bp)336
Transcript length (bp)207
Coding sequence length (bp)207
Protein length (aa) 69

Overview

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PFAM Domains

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Extracellular Signal peptide 0.0468 0.0547 0.9794 0.0505 0.0489 0.0064 0.0486 0.0681 0.053 0.004

SignalP

SignalP signal predicted Location Score
Yes 1 - 18 0.999622

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Click here for more information

Orthologs

Orthofinder run ID4
Orthogroup7011
Change Orthofinder run
Species Protein ID
Ophiocordyceps camponoti-floridani Ophcf2|00179 (this protein)
Ophiocordyceps kimflemingae Ophio5|2036
Ophiocordyceps subramaniannii Hirsu2|365

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|00179
MKAPSLLTLTLLLSPAAARWILDKRSSCQACAVGNFNAADACCSLSCAAQHKNKHGGHCNENKVCVCN*
Coding >Ophcf2|00179
ATGAAGGCCCCCTCCCTCCTCACCCTTACCCTCCTCCTCTCCCCCGCCGCCGCCCGCTGGATCCTCGACAAGCGC
TCATCCTGCCAAGCCTGCGCCGTCGGCAACTTCAACGCCGCCGACGCCTGCTGCAGTCTTTCCTGCGCAGCCCAG
CACAAGAACAAGCATGGAGGTCATTGCAATGAGAACAAGGTCTGCGTCTGCAACTAA
Transcript >Ophcf2|00179
ATGAAGGCCCCCTCCCTCCTCACCCTTACCCTCCTCCTCTCCCCCGCCGCCGCCCGCTGGATCCTCGACAAGCGC
TCATCCTGCCAAGCCTGCGCCGTCGGCAACTTCAACGCCGCCGACGCCTGCTGCAGTCTTTCCTGCGCAGCCCAG
CACAAGAACAAGCATGGAGGTCATTGCAATGAGAACAAGGTCTGCGTCTGCAACTAA
Gene >Ophcf2|00179
ATGAAGGCCCCCTCCCTCCTCACCCTTACCCTCCTCCTCTCCCCCGCCGCCGCCCGCTGGATCCTCGACAAGCGC
TCATCCTGCCAAGCCTGCGCCGTCGGCAACTTCAACGCCGCCGACGCCTGCTGCAGTCTTTCCGTACCCCTCTCC
CCTCTCCCCTCTCCCCCTTCCCCTTTCCTTCATAACCGGCGCTGACAAGGACGTCAATGTGCCAGTGCGCAGCCC
AGCACAAGAACAAGCATGGAGGTCATTGCAATGAGAACAAGTATGCGTCTCACGAGTGCACGGGACGTCTACAGA
GCTGACAACCAAGACAGGGTCTGCGTCTGCAACTAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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