Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|00166
Gene name
Locationscaffold_01:1066635..1067484
Strand+
Gene length (bp)849
Transcript length (bp)453
Coding sequence length (bp)453
Protein length (aa) 151

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04145 Ctr Ctr copper transporter family 1.1E-16 22 90
PF04145 Ctr Ctr copper transporter family 1.2E-13 86 137

GO

GO Term Description Terminal node
GO:0035434 copper ion transmembrane transport Yes
GO:0005375 copper ion transmembrane transporter activity Yes
GO:0016021 integral component of membrane Yes
GO:0000041 transition metal ion transport No
GO:0051234 establishment of localization No
GO:0110165 cellular anatomical entity No
GO:0009987 cellular process No
GO:0022890 inorganic cation transmembrane transporter activity No
GO:0006810 transport No
GO:0046915 transition metal ion transmembrane transporter activity No
GO:0006825 copper ion transport No
GO:0022857 transmembrane transporter activity No
GO:0015318 inorganic molecular entity transmembrane transporter activity No
GO:0031224 intrinsic component of membrane No
GO:0005215 transporter activity No
GO:0098655 cation transmembrane transport No
GO:0051179 localization No
GO:0034220 ion transmembrane transport No
GO:0006812 cation transport No
GO:0008324 cation transmembrane transporter activity No
GO:0098662 inorganic cation transmembrane transport No
GO:0005575 cellular_component No
GO:0003674 molecular_function No
GO:0098660 inorganic ion transmembrane transport No
GO:0015075 ion transmembrane transporter activity No
GO:0030001 metal ion transport No
GO:0055085 transmembrane transport No
GO:0006811 ion transport No
GO:0046873 metal ion transmembrane transporter activity No
GO:0008150 biological_process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 19 0.5

Transmembrane Domains

Domain # Start End Length
1 38 60 22
2 95 117 22
3 121 138 17

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Fungus Fungus in pure culture 155.30 82.29 228.31
Alive In ants, during behavior modification 37.92 13.25 62.60
Dead In ants, recently dead 43.80 16.20 71.41

Differential expression

Label1 Label2 Q-value Significant difference
Alive Fungus 0.000238 yes
Alive Dead 0.601524 no
Dead Fungus 0.000238 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|00166
MDHGHMDHGHGHGHDDMCSMNMLFTWDTTNLCIVFRQWHIRSTASLIFSLLAVVLLAMLYEALRALSRRFEAAQE
RRIAAMPRQNHYQASQRVQVIKSLFYALQNFYAFMLMLIFMTYNGWVMMAVSLGAFFGYLLFGQATSSTKDNACH
*
Coding >Ophcf2|00166
ATGGATCACGGCCACATGGATCACGGCCACGGCCACGGCCACGACGACATGTGCAGCATGAACATGCTCTTCACC
TGGGACACGACAAATCTCTGCATCGTCTTCCGTCAGTGGCACATCCGCTCTACCGCCTCCCTCATCTTCTCCCTA
CTCGCCGTCGTCCTCCTCGCCATGCTCTACGAGGCTCTGCGCGCCCTCTCACGACGTTTCGAGGCTGCTCAGGAG
AGGCGTATCGCCGCCATGCCCAGGCAGAATCACTACCAGGCCAGCCAACGCGTCCAGGTCATCAAGTCTCTCTTC
TACGCCCTGCAAAACTTTTACGCCTTTATGCTCATGCTCATATTCATGACGTACAACGGCTGGGTCATGATGGCC
GTCTCTCTCGGCGCCTTCTTTGGATACCTGCTATTTGGACAGGCCACGTCGTCGACCAAGGATAACGCATGTCAC
TAA
Transcript >Ophcf2|00166
ATGGATCACGGCCACATGGATCACGGCCACGGCCACGGCCACGACGACATGTGCAGCATGAACATGCTCTTCACC
TGGGACACGACAAATCTCTGCATCGTCTTCCGTCAGTGGCACATCCGCTCTACCGCCTCCCTCATCTTCTCCCTA
CTCGCCGTCGTCCTCCTCGCCATGCTCTACGAGGCTCTGCGCGCCCTCTCACGACGTTTCGAGGCTGCTCAGGAG
AGGCGTATCGCCGCCATGCCCAGGCAGAATCACTACCAGGCCAGCCAACGCGTCCAGGTCATCAAGTCTCTCTTC
TACGCCCTGCAAAACTTTTACGCCTTTATGCTCATGCTCATATTCATGACGTACAACGGCTGGGTCATGATGGCC
GTCTCTCTCGGCGCCTTCTTTGGATACCTGCTATTTGGACAGGCCACGTCGTCGACCAAGGATAACGCATGTCAC
TAA
Gene >Ophcf2|00166
ATGGATCACGGCCACATGGATCACGGCCACGGCCACGGCCACGACGACATGTGCAGCATGAACGCAAGCCTCACC
CTATCGCCCATCTATTCTCCCACCACTACTGACCGATCGATCCCCTTCCCAGATGCTCTTCACCTGGGACACGAC
AAATCTCTGCATCGTCTTCCGTCAGTGGCACATCCGCTCTACCGCCTCCCTCATCTTCTCCCTACTCGCCGTCGT
CCTCCTCGCCATGCTCTACGAGGCTCTGCGCGCCCTCTCACGACGTTTCGAGGCTGCTCAGGAGAGGCGTATCGC
CGCCATGCCCAGTGAGCCCCCCCCCCCCTACTCTCCCTCGCCTCCTCCACCCCCTTCTCCTCTGGAACAGAAAAG
ATCTATATATATGTATATATACATTCATTGTATACGCATATATATTTGTTCGACCTGCTTCCTCTTACATTGCGC
CACTTCTCTCCTCCTCCATGGGACTTGTGCCAATGCTGAACCTTGGCCCTCCTCTTCTTCCCCATCCACGTTAAA
GACCATCATCAACTTGGCCATGCTGAGACGACTCCTTTACTGCCTCCAGGGCAGAATCACTACCAGGCCAGCCAA
CGCGTCCAGGTCATCAAGTCTCTCTTCTACGCCCTGCAAAACTTTTACGCCTTTATGCTCATGTGAGTCAATACA
TCTCCTGCTTTCTCCCTCTTGATTCGGGGCTAAAGACGGGGGGGGGGTTTCTCAAGGCTCATATTCATGACGTAC
AACGGCTGGGTCATGATGGCCGTCTCTCTCGGCGCCTTCTTTGGATACCTGCTATTTGGACAGGCCACGTCGTCG
ACCAAGGATAACGCATGTCACTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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