Protein ID | Ophcf2|00155 |
Gene name | |
Location | scaffold_01:1038128..1040252 |
Strand | - |
Gene length (bp) | 2124 |
Transcript length (bp) | 2124 |
Coding sequence length (bp) | 2124 |
Protein length (aa) | 708 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF13428 | TPR_14 | Tetratricopeptide repeat | 1.2E-05 | 75 | 114 |
PF02184 | HAT | HAT (Half-A-TPR) repeat | 2.5E-06 | 86 | 112 |
PF02184 | HAT | HAT (Half-A-TPR) repeat | 8.2E-11 | 188 | 218 |
PF02184 | HAT | HAT (Half-A-TPR) repeat | 1.2E-04 | 521 | 549 |
PF14559 | TPR_19 | Tetratricopeptide repeat | 2.5E-07 | 83 | 132 |
PF13432 | TPR_16 | Tetratricopeptide repeat | 1.9E-02 | 83 | 133 |
GO Term | Description | Terminal node |
---|---|---|
GO:0006396 | RNA processing | Yes |
GO:0006807 | nitrogen compound metabolic process | No |
GO:0071704 | organic substance metabolic process | No |
GO:0044238 | primary metabolic process | No |
GO:0006725 | cellular aromatic compound metabolic process | No |
GO:0046483 | heterocycle metabolic process | No |
GO:1901360 | organic cyclic compound metabolic process | No |
GO:0034641 | cellular nitrogen compound metabolic process | No |
GO:0008152 | metabolic process | No |
GO:0090304 | nucleic acid metabolic process | No |
GO:0008150 | biological_process | No |
GO:0009987 | cellular process | No |
GO:0043170 | macromolecule metabolic process | No |
GO:0016070 | RNA metabolic process | No |
GO:0044237 | cellular metabolic process | No |
GO:0006139 | nucleobase-containing compound metabolic process | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 14 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophcf2|00155 MESTRGPPRVKNKAAAPVQISAEQLLREAVDRQEGSLQAPTQRFTDLEELHEYQGRKRKEFEDYVRRNRVSLHNW TQYAQWELEQKEFARARSVFERALDVHPHNVQLWIRYIEAEMKSRNINHARNLLDRAVTVLPRVDKLWYKYVYME EMLGNIPGTRHVFDRWMQWHPDEAAWSAYIKLEKRYGEYDRARDIFRTLTMIHPEPRNWIKWARFEEEHGTSHLV REVFGAAVEAAGDDLVDERLLMAYARFEAKLNEYERARAIYKFALDRLPRSKSMLLHKAYTTFEKQFGDSDGVED VVLSKRRRLYEEQIRENGKNYDAWFDLAALEESAGDADRVRDVYERAVAQVPPTNEKRHWRRYIYLWIFYAIWEE LEGKDPTRTRQIYETCLGLVPHDRFTFAKLWLLAAQFEVRQGRLTAARKLLGRALGTCPKDRLFDGYIDLERRLF EFTRCRTLYEKHVQYNPSNCQTWIRFAELERGLDDVDRARAILELAVGQPQLDMPELLWKAYIDLEEEEGEYERA RALYERLLDKTGHVKVWISYAHFEINVPDDDDDDDNDDDRNNNNQDEQEEEDDQDRPVSEQAKSRARTIFTRAHA SLRDQDLKPERASLLAAWLSFERTHGSPADVEAVERQMPRRVRRRRLRRLDVVNNNNNNDGHGGDGDGDGDDVYQ EVLDYVFPADEVQAKSLLDVHALAAQWKSAAK* |
Coding | >Ophcf2|00155 ATGGAGTCAACGAGAGGCCCCCCCCGCGTCAAGAACAAGGCCGCAGCGCCCGTCCAAATCAGCGCCGAGCAACTC CTCCGCGAAGCCGTCGACCGACAGGAAGGCTCCCTACAGGCACCGACTCAGCGCTTCACCGACCTCGAGGAGCTG CACGAGTATCAGGGCCGCAAGCGCAAGGAGTTCGAAGACTACGTACGTCGCAATCGCGTCAGCCTCCACAACTGG ACTCAGTACGCGCAATGGGAGCTGGAGCAGAAGGAGTTTGCCCGCGCCCGCTCCGTCTTCGAGCGCGCGCTCGAC GTCCATCCGCACAACGTCCAGCTCTGGATCCGCTACATCGAGGCCGAGATGAAGTCGCGAAACATCAACCACGCG CGCAACCTTCTGGACCGCGCCGTCACCGTTCTCCCCCGCGTCGACAAGCTATGGTACAAGTACGTCTACATGGAG GAGATGCTTGGCAACATCCCGGGAACGCGCCACGTCTTCGATCGCTGGATGCAATGGCACCCGGACGAAGCTGCC TGGAGCGCCTACATCAAGCTGGAGAAGAGATACGGCGAGTACGACCGGGCGCGCGACATCTTCCGCACCCTGACC ATGATTCATCCGGAGCCGCGCAACTGGATCAAATGGGCGCGTTTCGAAGAGGAGCACGGCACCAGCCACCTGGTC CGCGAAGTCTTTGGCGCCGCCGTCGAGGCAGCGGGCGACGACCTGGTAGACGAGAGGTTACTCATGGCCTACGCC CGCTTCGAAGCCAAGCTCAACGAGTACGAACGCGCGCGCGCCATCTACAAATTCGCCCTCGACCGTCTACCACGC TCCAAGTCAATGCTCCTACACAAGGCCTACACAACATTCGAGAAGCAGTTTGGCGACTCGGACGGCGTCGAGGAC GTCGTTCTCTCCAAGCGCCGCCGCCTATACGAGGAACAAATCCGCGAAAACGGCAAAAACTACGACGCCTGGTTC GACCTCGCCGCTCTCGAAGAATCGGCCGGAGACGCAGACCGCGTCCGCGATGTCTACGAGCGAGCCGTCGCTCAA GTCCCTCCCACCAACGAGAAGAGACACTGGCGCCGCTACATCTACCTCTGGATCTTCTACGCCATCTGGGAGGAG CTCGAGGGCAAGGACCCTACCCGCACGCGACAGATCTACGAGACGTGTCTCGGCCTTGTGCCCCACGATCGCTTC ACATTTGCCAAGCTATGGCTTCTAGCCGCCCAGTTCGAAGTGCGCCAGGGCCGTCTAACCGCCGCGCGCAAGCTC CTGGGCCGCGCGCTGGGCACGTGTCCCAAAGACCGGCTCTTCGACGGCTACATCGATCTCGAGCGCCGCCTCTTC GAATTCACCCGCTGCCGCACTCTATACGAGAAGCACGTGCAGTACAACCCTTCCAACTGCCAGACGTGGATCCGC TTCGCCGAGCTAGAACGCGGTCTCGATGACGTCGACCGCGCCCGCGCCATCCTCGAGCTCGCCGTCGGTCAGCCG CAGCTCGACATGCCGGAGCTGCTGTGGAAGGCCTACATCGATCTCGAGGAGGAAGAGGGCGAGTACGAGAGGGCT CGGGCCTTGTACGAGCGTCTACTGGATAAGACGGGCCACGTGAAGGTCTGGATCAGCTACGCCCACTTCGAAATC AACGTACCCGACGACGACGACGACGACGACAACGACGACGACAGAAACAACAACAACCAAGACGAACAAGAAGAA GAAGACGATCAAGACCGCCCCGTAAGCGAACAAGCCAAATCCCGCGCCCGCACCATCTTCACCCGCGCCCACGCC TCCCTCCGCGACCAAGACCTCAAGCCAGAGCGCGCCTCCCTCCTAGCAGCCTGGCTCTCCTTTGAGCGCACGCAC GGCTCTCCCGCCGACGTCGAAGCCGTCGAGCGACAGATGCCGAGGCGCGTTCGTCGTCGTCGCCTCCGTCGTCTG GATGTCGTCAACAATAACAACAACAATGATGGCCATGGTGGTGACGGTGACGGTGACGGTGATGACGTCTACCAA GAGGTGCTGGATTACGTCTTTCCCGCAGACGAGGTGCAGGCCAAGAGCCTGTTGGATGTTCACGCCCTCGCCGCT CAGTGGAAGTCTGCTGCCAAGTAG |
Transcript | >Ophcf2|00155 ATGGAGTCAACGAGAGGCCCCCCCCGCGTCAAGAACAAGGCCGCAGCGCCCGTCCAAATCAGCGCCGAGCAACTC CTCCGCGAAGCCGTCGACCGACAGGAAGGCTCCCTACAGGCACCGACTCAGCGCTTCACCGACCTCGAGGAGCTG CACGAGTATCAGGGCCGCAAGCGCAAGGAGTTCGAAGACTACGTACGTCGCAATCGCGTCAGCCTCCACAACTGG ACTCAGTACGCGCAATGGGAGCTGGAGCAGAAGGAGTTTGCCCGCGCCCGCTCCGTCTTCGAGCGCGCGCTCGAC GTCCATCCGCACAACGTCCAGCTCTGGATCCGCTACATCGAGGCCGAGATGAAGTCGCGAAACATCAACCACGCG CGCAACCTTCTGGACCGCGCCGTCACCGTTCTCCCCCGCGTCGACAAGCTATGGTACAAGTACGTCTACATGGAG GAGATGCTTGGCAACATCCCGGGAACGCGCCACGTCTTCGATCGCTGGATGCAATGGCACCCGGACGAAGCTGCC TGGAGCGCCTACATCAAGCTGGAGAAGAGATACGGCGAGTACGACCGGGCGCGCGACATCTTCCGCACCCTGACC ATGATTCATCCGGAGCCGCGCAACTGGATCAAATGGGCGCGTTTCGAAGAGGAGCACGGCACCAGCCACCTGGTC CGCGAAGTCTTTGGCGCCGCCGTCGAGGCAGCGGGCGACGACCTGGTAGACGAGAGGTTACTCATGGCCTACGCC CGCTTCGAAGCCAAGCTCAACGAGTACGAACGCGCGCGCGCCATCTACAAATTCGCCCTCGACCGTCTACCACGC TCCAAGTCAATGCTCCTACACAAGGCCTACACAACATTCGAGAAGCAGTTTGGCGACTCGGACGGCGTCGAGGAC GTCGTTCTCTCCAAGCGCCGCCGCCTATACGAGGAACAAATCCGCGAAAACGGCAAAAACTACGACGCCTGGTTC GACCTCGCCGCTCTCGAAGAATCGGCCGGAGACGCAGACCGCGTCCGCGATGTCTACGAGCGAGCCGTCGCTCAA GTCCCTCCCACCAACGAGAAGAGACACTGGCGCCGCTACATCTACCTCTGGATCTTCTACGCCATCTGGGAGGAG CTCGAGGGCAAGGACCCTACCCGCACGCGACAGATCTACGAGACGTGTCTCGGCCTTGTGCCCCACGATCGCTTC ACATTTGCCAAGCTATGGCTTCTAGCCGCCCAGTTCGAAGTGCGCCAGGGCCGTCTAACCGCCGCGCGCAAGCTC CTGGGCCGCGCGCTGGGCACGTGTCCCAAAGACCGGCTCTTCGACGGCTACATCGATCTCGAGCGCCGCCTCTTC GAATTCACCCGCTGCCGCACTCTATACGAGAAGCACGTGCAGTACAACCCTTCCAACTGCCAGACGTGGATCCGC TTCGCCGAGCTAGAACGCGGTCTCGATGACGTCGACCGCGCCCGCGCCATCCTCGAGCTCGCCGTCGGTCAGCCG CAGCTCGACATGCCGGAGCTGCTGTGGAAGGCCTACATCGATCTCGAGGAGGAAGAGGGCGAGTACGAGAGGGCT CGGGCCTTGTACGAGCGTCTACTGGATAAGACGGGCCACGTGAAGGTCTGGATCAGCTACGCCCACTTCGAAATC AACGTACCCGACGACGACGACGACGACGACAACGACGACGACAGAAACAACAACAACCAAGACGAACAAGAAGAA GAAGACGATCAAGACCGCCCCGTAAGCGAACAAGCCAAATCCCGCGCCCGCACCATCTTCACCCGCGCCCACGCC TCCCTCCGCGACCAAGACCTCAAGCCAGAGCGCGCCTCCCTCCTAGCAGCCTGGCTCTCCTTTGAGCGCACGCAC GGCTCTCCCGCCGACGTCGAAGCCGTCGAGCGACAGATGCCGAGGCGCGTTCGTCGTCGTCGCCTCCGTCGTCTG GATGTCGTCAACAATAACAACAACAATGATGGCCATGGTGGTGACGGTGACGGTGACGGTGATGACGTCTACCAA GAGGTGCTGGATTACGTCTTTCCCGCAGACGAGGTGCAGGCCAAGAGCCTGTTGGATGTTCACGCCCTCGCCGCT CAGTGGAAGTCTGCTGCCAAGTAG |
Gene | >Ophcf2|00155 ATGGAGTCAACGAGAGGCCCCCCCCGCGTCAAGAACAAGGCCGCAGCGCCCGTCCAAATCAGCGCCGAGCAACTC CTCCGCGAAGCCGTCGACCGACAGGAAGGCTCCCTACAGGCACCGACTCAGCGCTTCACCGACCTCGAGGAGCTG CACGAGTATCAGGGCCGCAAGCGCAAGGAGTTCGAAGACTACGTACGTCGCAATCGCGTCAGCCTCCACAACTGG ACTCAGTACGCGCAATGGGAGCTGGAGCAGAAGGAGTTTGCCCGCGCCCGCTCCGTCTTCGAGCGCGCGCTCGAC GTCCATCCGCACAACGTCCAGCTCTGGATCCGCTACATCGAGGCCGAGATGAAGTCGCGAAACATCAACCACGCG CGCAACCTTCTGGACCGCGCCGTCACCGTTCTCCCCCGCGTCGACAAGCTATGGTACAAGTACGTCTACATGGAG GAGATGCTTGGCAACATCCCGGGAACGCGCCACGTCTTCGATCGCTGGATGCAATGGCACCCGGACGAAGCTGCC TGGAGCGCCTACATCAAGCTGGAGAAGAGATACGGCGAGTACGACCGGGCGCGCGACATCTTCCGCACCCTGACC ATGATTCATCCGGAGCCGCGCAACTGGATCAAATGGGCGCGTTTCGAAGAGGAGCACGGCACCAGCCACCTGGTC CGCGAAGTCTTTGGCGCCGCCGTCGAGGCAGCGGGCGACGACCTGGTAGACGAGAGGTTACTCATGGCCTACGCC CGCTTCGAAGCCAAGCTCAACGAGTACGAACGCGCGCGCGCCATCTACAAATTCGCCCTCGACCGTCTACCACGC TCCAAGTCAATGCTCCTACACAAGGCCTACACAACATTCGAGAAGCAGTTTGGCGACTCGGACGGCGTCGAGGAC GTCGTTCTCTCCAAGCGCCGCCGCCTATACGAGGAACAAATCCGCGAAAACGGCAAAAACTACGACGCCTGGTTC GACCTCGCCGCTCTCGAAGAATCGGCCGGAGACGCAGACCGCGTCCGCGATGTCTACGAGCGAGCCGTCGCTCAA GTCCCTCCCACCAACGAGAAGAGACACTGGCGCCGCTACATCTACCTCTGGATCTTCTACGCCATCTGGGAGGAG CTCGAGGGCAAGGACCCTACCCGCACGCGACAGATCTACGAGACGTGTCTCGGCCTTGTGCCCCACGATCGCTTC ACATTTGCCAAGCTATGGCTTCTAGCCGCCCAGTTCGAAGTGCGCCAGGGCCGTCTAACCGCCGCGCGCAAGCTC CTGGGCCGCGCGCTGGGCACGTGTCCCAAAGACCGGCTCTTCGACGGCTACATCGATCTCGAGCGCCGCCTCTTC GAATTCACCCGCTGCCGCACTCTATACGAGAAGCACGTGCAGTACAACCCTTCCAACTGCCAGACGTGGATCCGC TTCGCCGAGCTAGAACGCGGTCTCGATGACGTCGACCGCGCCCGCGCCATCCTCGAGCTCGCCGTCGGTCAGCCG CAGCTCGACATGCCGGAGCTGCTGTGGAAGGCCTACATCGATCTCGAGGAGGAAGAGGGCGAGTACGAGAGGGCT CGGGCCTTGTACGAGCGTCTACTGGATAAGACGGGCCACGTGAAGGTCTGGATCAGCTACGCCCACTTCGAAATC AACGTACCCGACGACGACGACGACGACGACAACGACGACGACAGAAACAACAACAACCAAGACGAACAAGAAGAA GAAGACGATCAAGACCGCCCCGTAAGCGAACAAGCCAAATCCCGCGCCCGCACCATCTTCACCCGCGCCCACGCC TCCCTCCGCGACCAAGACCTCAAGCCAGAGCGCGCCTCCCTCCTAGCAGCCTGGCTCTCCTTTGAGCGCACGCAC GGCTCTCCCGCCGACGTCGAAGCCGTCGAGCGACAGATGCCGAGGCGCGTTCGTCGTCGTCGCCTCCGTCGTCTG GATGTCGTCAACAATAACAACAACAATGATGGCCATGGTGGTGACGGTGACGGTGACGGTGATGACGTCTACCAA GAGGTGCTGGATTACGTCTTTCCCGCAGACGAGGTGCAGGCCAAGAGCCTGTTGGATGTTCACGCCCTCGCCGCT CAGTGGAAGTCTGCTGCCAAGTAG |