© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|00111 |
| Gene name | |
| Location | scaffold_01:868536..869656 |
| Strand | + |
| Gene length (bp) | 1120 |
| Transcript length (bp) | 1002 |
| Coding sequence length (bp) | 1002 |
| Protein length (aa) | 334 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01786 | AOX | Alternative oxidase | 4.6E-91 | 65 | 298 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0009916 | alternative oxidase activity | Yes |
| GO:0016679 | oxidoreductase activity, acting on diphenols and related substances as donors | No |
| GO:0016682 | oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor | No |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0016491 | oxidoreductase activity | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mitochondrion | Mitochondrial transit peptide | 0.1138 | 0.0663 | 0.0401 | 0.1268 | 0.9343 | 0.1045 | 0.069 | 0.041 | 0.093 | 0.0105 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 130 | 152 | 22 |
| 2 | 193 | 215 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 4129 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|00111 MISVAIQPRAIGSRHAVQLVRAGALTAISRRCFSTTPVTHLRDFFPVKDTPHILKTKPAWPHHGYTAEEMAAVIP AHRKPRNFSDWAAWKIVRIARYWMDKATGMDKEQQVDKKNPTTAVVADKPLTEAQWLVRFVFLESIAGVPGMVAG MLRHLNSLRRMRRDNGWIETLLEESYNERMHLLTFMKMCEPGWFMKLMIIAAQGVFFNGLFVAYLLHPKVVHRFV GYLEEEAVHTYTRAIHEIDQGHLPKWSDPKFQIPDIAIGYWNMPQGHRTMRDLILYIRADEAGHRGVNHTLGNLN QKEDPNPFVSTFKDRDAPRPSLKPAGYERAEVI* |
| Coding | >Ophcf2|00111 ATGATATCTGTTGCTATACAGCCTCGGGCTATCGGTTCGCGGCACGCCGTCCAGCTCGTTCGAGCAGGAGCCCTG ACAGCCATCTCCCGCCGCTGTTTTTCGACCACCCCAGTGACGCACCTCCGCGACTTCTTCCCCGTCAAAGACACG CCTCACATTCTCAAGACCAAGCCTGCCTGGCCTCACCATGGTTATACCGCCGAGGAGATGGCGGCCGTGATCCCG GCTCACCGCAAGCCACGCAATTTCAGCGACTGGGCTGCTTGGAAGATAGTCCGCATCGCGCGGTACTGGATGGAC AAGGCCACCGGTATGGACAAGGAGCAGCAGGTGGATAAGAAGAACCCCACGACAGCCGTCGTGGCGGACAAGCCA CTGACCGAGGCCCAATGGCTAGTCCGCTTCGTCTTCTTGGAGAGCATTGCCGGTGTGCCAGGAATGGTAGCCGGG ATGCTTCGCCACCTCAACAGCCTGCGACGCATGCGGCGGGACAACGGCTGGATCGAGACGCTCCTCGAGGAGAGC TACAACGAGCGGATGCACCTCCTGACCTTCATGAAGATGTGTGAGCCGGGATGGTTCATGAAGCTCATGATCATC GCTGCCCAAGGCGTCTTCTTTAACGGACTCTTCGTCGCTTACCTGCTTCATCCCAAAGTCGTCCACCGCTTCGTC GGCTATCTGGAGGAAGAGGCCGTGCACACGTACACTCGAGCCATCCACGAGATTGATCAGGGCCATCTGCCCAAA TGGTCCGACCCCAAGTTCCAAATTCCGGATATTGCTATTGGGTACTGGAACATGCCCCAAGGTCACCGCACCATG AGAGACCTCATCCTTTATATCCGAGCCGACGAGGCTGGTCACCGTGGTGTCAACCACACGCTTGGAAATCTCAAC CAGAAGGAAGATCCGAACCCGTTCGTCAGCACGTTCAAGGACCGCGATGCACCTAGACCGAGCCTCAAGCCCGCG GGTTACGAGCGAGCCGAGGTCATCTGA |
| Transcript | >Ophcf2|00111 ATGATATCTGTTGCTATACAGCCTCGGGCTATCGGTTCGCGGCACGCCGTCCAGCTCGTTCGAGCAGGAGCCCTG ACAGCCATCTCCCGCCGCTGTTTTTCGACCACCCCAGTGACGCACCTCCGCGACTTCTTCCCCGTCAAAGACACG CCTCACATTCTCAAGACCAAGCCTGCCTGGCCTCACCATGGTTATACCGCCGAGGAGATGGCGGCCGTGATCCCG GCTCACCGCAAGCCACGCAATTTCAGCGACTGGGCTGCTTGGAAGATAGTCCGCATCGCGCGGTACTGGATGGAC AAGGCCACCGGTATGGACAAGGAGCAGCAGGTGGATAAGAAGAACCCCACGACAGCCGTCGTGGCGGACAAGCCA CTGACCGAGGCCCAATGGCTAGTCCGCTTCGTCTTCTTGGAGAGCATTGCCGGTGTGCCAGGAATGGTAGCCGGG ATGCTTCGCCACCTCAACAGCCTGCGACGCATGCGGCGGGACAACGGCTGGATCGAGACGCTCCTCGAGGAGAGC TACAACGAGCGGATGCACCTCCTGACCTTCATGAAGATGTGTGAGCCGGGATGGTTCATGAAGCTCATGATCATC GCTGCCCAAGGCGTCTTCTTTAACGGACTCTTCGTCGCTTACCTGCTTCATCCCAAAGTCGTCCACCGCTTCGTC GGCTATCTGGAGGAAGAGGCCGTGCACACGTACACTCGAGCCATCCACGAGATTGATCAGGGCCATCTGCCCAAA TGGTCCGACCCCAAGTTCCAAATTCCGGATATTGCTATTGGGTACTGGAACATGCCCCAAGGTCACCGCACCATG AGAGACCTCATCCTTTATATCCGAGCCGACGAGGCTGGTCACCGTGGTGTCAACCACACGCTTGGAAATCTCAAC CAGAAGGAAGATCCGAACCCGTTCGTCAGCACGTTCAAGGACCGCGATGCACCTAGACCGAGCCTCAAGCCCGCG GGTTACGAGCGAGCCGAGGTCATCTGA |
| Gene | >Ophcf2|00111 ATGATATCTGTTGCTATACAGCCTCGGGCTATCGGTTCGCGGCACGCCGTCCAGCTCGTTCGAGCAGGAGCCCTG ACAGCCATCTCCCGCCGCTGTTTTTCGACCACCCCAGTGACGCACCTCCGCGACTTCTTCCCCGTCAAAGACACG CCTCACATTCTCAAGACCAAGCCTGCCTGGCCTCACCATGGTTATACCGCCGAGGAGATGGCGGCCGTGATCCCG GCTCACCGCAAGCCACGCAATTTCAGCGACTGGGCTGCTTGGAAGATAGTCCGCATCGCGCGGTACTGGATGGAC AAGGCCACCGGTATGGACAAGGAGCAGCAGGTGGATAAGAAGAACCCCACGACAGCCGTCGTGGCGGACAAGCCA CTGACCGAGGCCCAATGGGTGAGTTGCCCCCCGTCCTCGTTTTCCTTTCTAGACGTGGCTAACGACTGAATAGCT AGTCCGCTTCGTCTTCTTGGAGAGCATTGCCGGTGTGCCAGGAATGGTAGCCGGGATGCTTCGCCACCTCAACAG CCTGCGACGCATGCGGCGGGACAACGGCTGGATCGAGACGCTCCTCGAGGAGAGCTACAACGAGCGGATGCACCT CCTGACCTTCATGAAGATGTGTGAGCCGGGATGGTTCATGAAGCTCATGATCATCGCTGCCCAAGGCGTCTTCTT TAACGGACTCTTCGTCGCTTACCTGCTTCATCCCAAAGTCGTCCACCGCTTCGTCGGCTATCTGGAGGAAGAGGC CGTGCACACGTACACTCGAGCCATCCACGAGATTGATCAGGGCCATCTGCCCAAATGGTCCGACCCCAAGTTCCA AATTCCGGATATTGCTATTGGGGTAAGCATCGACACCCAGCCACTTTCAGTGCGAGGCTTCAGCTGACGTGAACC GCCTTGATAGTACTGGAACATGCCCCAAGGTCACCGCACCATGAGAGACCTCATCCTTTATATCCGAGCCGACGA GGCTGGTCACCGTGGTGTCAACCACACGCTTGGAAATCTCAACCAGAAGGAAGATCCGAACCCGTTCGTCAGCAC GTTCAAGGACCGCGATGCACCTAGACCGAGCCTCAAGCCCGCGGGTTACGAGCGAGCCGAGGTCATCTGA |