© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|00097 |
| Gene name | |
| Location | scaffold_01:839581..840211 |
| Strand | - |
| Gene length (bp) | 630 |
| Transcript length (bp) | 570 |
| Coding sequence length (bp) | 570 |
| Protein length (aa) | 190 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 44 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 92 | 109 | 17 |
| 2 | 116 | 138 | 22 |
| 3 | 142 | 164 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 65.58 | 31.62 | 99.54 |
| Alive | In ants, during behavior modification | 104.95 | 55.16 | 154.74 |
| Dead | In ants, recently dead | 110.94 | 59.37 | 162.50 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.024074 | yes |
| Alive | Dead | 0.793999 | no |
| Dead | Fungus | 0.009988 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|00097 MDFAPYQSSPPEHARVASPESLTSPRPSQDATRRSPPLLQHPQPQRAWAGALDGHATAVQGGGGSWANEAQPGPD PVSEFDTSLGIRLDYEASLAYVALPPLGAIVLLVLERNSDYVRFHAWQAALLFTAILVLHIVISPSSFLSWLLFF ADVGLMAFLALKAYRDAENLDRFEVPFFGPVSGRILDDE* |
| Coding | >Ophcf2|00097 ATGGACTTTGCTCCTTATCAATCTTCGCCTCCAGAACACGCGCGCGTCGCGTCACCTGAGTCCCTCACGTCACCT CGCCCATCCCAAGACGCCACCCGCAGAAGCCCCCCCTTGCTGCAGCACCCGCAGCCCCAGCGCGCCTGGGCCGGA GCTCTAGACGGTCATGCCACCGCTGTTCAAGGCGGTGGAGGCTCGTGGGCCAACGAAGCGCAGCCGGGACCAGAT CCTGTGAGCGAGTTCGACACGAGCCTCGGCATACGGCTCGATTACGAGGCCTCTCTAGCTTACGTCGCGCTTCCG CCGCTGGGAGCCATTGTTCTTTTAGTTCTCGAGCGCAATAGCGACTACGTGCGCTTCCACGCCTGGCAGGCCGCC CTGCTCTTCACCGCCATCCTCGTTCTGCACATCGTCATCTCGCCATCTTCCTTTCTCAGCTGGCTCCTCTTCTTC GCTGACGTTGGTCTCATGGCGTTCCTCGCCCTCAAGGCATATAGGGACGCTGAGAATCTCGATCGGTTCGAGGTT CCCTTCTTCGGCCCCGTCTCCGGCCGCATCCTAGATGATGAGTAG |
| Transcript | >Ophcf2|00097 ATGGACTTTGCTCCTTATCAATCTTCGCCTCCAGAACACGCGCGCGTCGCGTCACCTGAGTCCCTCACGTCACCT CGCCCATCCCAAGACGCCACCCGCAGAAGCCCCCCCTTGCTGCAGCACCCGCAGCCCCAGCGCGCCTGGGCCGGA GCTCTAGACGGTCATGCCACCGCTGTTCAAGGCGGTGGAGGCTCGTGGGCCAACGAAGCGCAGCCGGGACCAGAT CCTGTGAGCGAGTTCGACACGAGCCTCGGCATACGGCTCGATTACGAGGCCTCTCTAGCTTACGTCGCGCTTCCG CCGCTGGGAGCCATTGTTCTTTTAGTTCTCGAGCGCAATAGCGACTACGTGCGCTTCCACGCCTGGCAGGCCGCC CTGCTCTTCACCGCCATCCTCGTTCTGCACATCGTCATCTCGCCATCTTCCTTTCTCAGCTGGCTCCTCTTCTTC GCTGACGTTGGTCTCATGGCGTTCCTCGCCCTCAAGGCATATAGGGACGCTGAGAATCTCGATCGGTTCGAGGTT CCCTTCTTCGGCCCCGTCTCCGGCCGCATCCTAGATGATGAGTAG |
| Gene | >Ophcf2|00097 ATGGACTTTGCTCCTTATCAATCTTCGCCTCCAGAACACGCGCGCGTCGCGTCACCTGAGTCCCTCACGTCACCT CGCCCATCCCAAGACGCCACCCGCAGAAGCCCCCCCTTGCTGCAGCACCCGCAGCCCCAGCGCGCCTGGGCCGGA GCTCTAGACGGTCATGCCACCGCTGTTCAAGGCGGTGGAGGCTCGTGGGCCAACGAAGCGCAGCCGGGACCAGAT CCTGTGAGCGAGTTCGACACGAGCCTCGGCATACGGCTCGATTACGAGGCCTCTCTAGCTTACGTCGCGCTTCCG CCGCTGGGAGCCATTGTTCTTTTAGTTCTCGAGCGCAATAGCGACTACGTGCGCTTCCACGCCTGGCAGGCCGCC CTGCTCTTCACCGCCATCCTCGTTCTGCACATCGTCATCTCGCCATCTTCCTTTCTCAGCTGGCTCCTCTTCTTC GCTGACGTTGGTCTCATGGCGTTCCTCGCCCTCAAGGCATATAGGGACGCTGAGAATCTCGATCGGTGAGCGCGC TCTGATCTCCTCTTGCATATGATGATCCCAAGCTTACGTGACTATATCAGGTTCGAGGTTCCCTTCTTCGGCCCC GTCTCCGGCCGCATCCTAGATGATGAGTAG |