© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|00084 |
| Gene name | |
| Location | scaffold_01:401222..402797 |
| Strand | + |
| Gene length (bp) | 1575 |
| Transcript length (bp) | 1122 |
| Coding sequence length (bp) | 1122 |
| Protein length (aa) | 374 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05368 | NmrA | NmrA-like family | 1.6E-14 | 50 | 271 |
| PF01370 | Epimerase | NAD dependent epimerase/dehydratase family | 2.2E-13 | 50 | 166 |
| PF13460 | NAD_binding_10 | NAD(P)H-binding | 3.4E-12 | 54 | 174 |
| PF01073 | 3Beta_HSD | 3-beta hydroxysteroid dehydrogenase/isomerase family | 6.2E-09 | 52 | 168 |
| PF16363 | GDP_Man_Dehyd | GDP-mannose 4,6 dehydratase | 5.2E-08 | 52 | 162 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006694 | steroid biosynthetic process | Yes |
| GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | Yes |
| GO:0003854 | 3-beta-hydroxy-delta5-steroid dehydrogenase activity | Yes |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0008152 | metabolic process | No |
| GO:0016229 | steroid dehydrogenase activity | No |
| GO:0009058 | biosynthetic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0008202 | steroid metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0033764 | steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | No |
| GO:0006629 | lipid metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0008610 | lipid biosynthetic process | No |
| GO:0008150 | biological_process | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mitochondrion | Mitochondrial transit peptide | 0.2211 | 0.067 | 0.1194 | 0.1313 | 0.9057 | 0.3424 | 0.0815 | 0.1033 | 0.0718 | 0.0394 |
| Orthofinder run ID | 4 |
| Orthogroup | 5343 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|00084 MKRFWAPVAVRWPNVGAFKDRFVSDLSVSRTGNPVNRVVGGRSSLGGHIVTVFGATGQLGRYVVNRLARRGCTIV VPFREEMTKRHLKVAGDLGKVIFLEFDLRNTASIEACVRHADTVYNLMGRNYPTKNFSLEDVHVEGTERIIEAVK KYDVDRYIHVSSYNADPDSKSEFFASKGRGEQVARFNLPQSTLVRPAPIFGFEDNLLIKLASAIMFTANHMQEKF WPVHSIDVGEALERMLDDDSTAGQTFELFGPRMYTMGQIKSMVDRETFTKKRHVNVPKVILQPLARLLNRFLWWH TLSADEVEREFIDQVIDPTAMTLKDLGINPGDISSFTYHYLQGFRSSNYYDLPPTTEKEKKEDKKYIHVLNEL* |
| Coding | >Ophcf2|00084 ATGAAGAGGTTTTGGGCTCCCGTAGCCGTACGTTGGCCGAACGTTGGCGCTTTCAAAGACCGCTTTGTGTCCGAT CTCTCTGTTTCTCGAACCGGCAATCCTGTGAACCGCGTAGTGGGTGGTCGATCTTCTCTAGGAGGTCATATTGTC ACTGTATTCGGCGCGACTGGTCAGCTTGGGAGATATGTTGTGAATCGTCTTGCTCGTCGAGGCTGCACAATCGTG GTCCCATTTCGGGAAGAAATGACGAAACGTCACCTAAAAGTTGCTGGAGACCTGGGCAAGGTTATCTTTCTAGAA TTCGACCTACGCAATACAGCATCCATTGAAGCTTGTGTGCGCCATGCGGATACCGTTTATAACTTGATGGGACGG AATTATCCAACGAAAAATTTTTCTCTAGAAGACGTACACGTCGAAGGAACAGAGCGAATAATCGAAGCTGTCAAG AAATATGACGTCGATAGATATATTCATGTGTCGTCTTATAACGCTGATCCGGACTCCAAGTCAGAATTCTTTGCC TCAAAGGGCAGAGGAGAGCAAGTAGCCCGATTCAATCTCCCGCAGTCGACCTTAGTTCGGCCGGCCCCAATATTC GGGTTTGAGGATAATCTTCTCATTAAGCTAGCATCGGCAATCATGTTCACAGCCAACCACATGCAAGAGAAGTTC TGGCCTGTCCATTCCATTGATGTGGGTGAGGCACTAGAAAGGATGCTCGACGACGACTCCACCGCAGGCCAAACA TTCGAGCTTTTCGGACCAAGGATGTACACAATGGGTCAGATCAAGTCCATGGTGGACAGGGAAACCTTCACAAAG AAGCGTCATGTGAACGTGCCTAAGGTTATACTTCAACCGTTGGCTCGGCTCCTTAACCGTTTTCTATGGTGGCAC ACGCTATCCGCAGACGAGGTAGAACGAGAATTCATCGACCAAGTCATCGACCCGACAGCAATGACGCTCAAGGAT CTAGGAATTAATCCTGGTGACATTTCCAGCTTCACGTATCATTACCTTCAAGGGTTCCGTAGCTCGAACTACTAT GACCTACCGCCTACTACAGAAAAGGAGAAAAAAGAGGACAAGAAATACATTCATGTGTTAAATGAACTTTAG |
| Transcript | >Ophcf2|00084 ATGAAGAGGTTTTGGGCTCCCGTAGCCGTACGTTGGCCGAACGTTGGCGCTTTCAAAGACCGCTTTGTGTCCGAT CTCTCTGTTTCTCGAACCGGCAATCCTGTGAACCGCGTAGTGGGTGGTCGATCTTCTCTAGGAGGTCATATTGTC ACTGTATTCGGCGCGACTGGTCAGCTTGGGAGATATGTTGTGAATCGTCTTGCTCGTCGAGGCTGCACAATCGTG GTCCCATTTCGGGAAGAAATGACGAAACGTCACCTAAAAGTTGCTGGAGACCTGGGCAAGGTTATCTTTCTAGAA TTCGACCTACGCAATACAGCATCCATTGAAGCTTGTGTGCGCCATGCGGATACCGTTTATAACTTGATGGGACGG AATTATCCAACGAAAAATTTTTCTCTAGAAGACGTACACGTCGAAGGAACAGAGCGAATAATCGAAGCTGTCAAG AAATATGACGTCGATAGATATATTCATGTGTCGTCTTATAACGCTGATCCGGACTCCAAGTCAGAATTCTTTGCC TCAAAGGGCAGAGGAGAGCAAGTAGCCCGATTCAATCTCCCGCAGTCGACCTTAGTTCGGCCGGCCCCAATATTC GGGTTTGAGGATAATCTTCTCATTAAGCTAGCATCGGCAATCATGTTCACAGCCAACCACATGCAAGAGAAGTTC TGGCCTGTCCATTCCATTGATGTGGGTGAGGCACTAGAAAGGATGCTCGACGACGACTCCACCGCAGGCCAAACA TTCGAGCTTTTCGGACCAAGGATGTACACAATGGGTCAGATCAAGTCCATGGTGGACAGGGAAACCTTCACAAAG AAGCGTCATGTGAACGTGCCTAAGGTTATACTTCAACCGTTGGCTCGGCTCCTTAACCGTTTTCTATGGTGGCAC ACGCTATCCGCAGACGAGGTAGAACGAGAATTCATCGACCAAGTCATCGACCCGACAGCAATGACGCTCAAGGAT CTAGGAATTAATCCTGGTGACATTTCCAGCTTCACGTATCATTACCTTCAAGGGTTCCGTAGCTCGAACTACTAT GACCTACCGCCTACTACAGAAAAGGAGAAAAAAGAGGACAAGAAATACATTCATGTGTTAAATGAACTTTAG |
| Gene | >Ophcf2|00084 ATGAAGAGGTTTTGGGCTCCCGTAGCCGTACGTTGGCCGAACGTTGGCGCTTTCAAAGACCGCTTTGTGTCCGAT CTCTCTGTTTCTCGAACCGGCAATCCTGTGAACCGCGTAGTGGGTGGTCGGTATGTCATTGTCCACGATCTGGCC TGCAAGACCTTTACTAATGGAAGAACATCTGCAGATCTTCTCTAGGAGGTAAAGGACACGTAATCTGTTGAAGTT ACTCGATGCTAAAGAGCGGGACAGGTCATATTGTCACTGTATTCGGCGCGACTGGTCAGCTTGGGAGATATGTTG TGAATCGTCTTGGTCTGTTATCAAGAAGTCAATCATCCCTTGACAGTGTTTCACCTAACGTTTAAAAAAGCTCGT CGAGGCTGCACAATCGTGGTCCCATTTCGGGAAGAAATGACGAAACGTCACCTAAAAGTTGCTGGAGACCTGGGC AAGGTTATCTTTCTAGTAAGCATGTATTCTTCATTATCACCTTCATTTCCTGACGATCAACGGATCAGGAATTCG ACCTACGCAATACAGCATCCATTGAAGCTTGTGTGCGCCATGCGGATACCGTTTATAACTTGATGGGACGGAATT ATCCAACGAAGTAGGCTTACACTTCCATACTCAACTCTTCCTTTGTTGATTTAGGATCTTTTAGAAATTTTTCTC TAGAAGACGTACACGTCGAAGGAACAGAGCGAATAATCGAAGCTGTCAAGAAATATGACGTCGATAGATATATTC ATGTGTCGTCTTATAACGCTGATCCGGACTCCAAGTCAGAATTCTTTGCCTCAAAGGTATGACACGTCAACGCTT CGATCTAACAACTTCGCGCATCTAAACTCTATGATAAAGGGCAGAGGAGAGCAAGTAGCCCGATTCAATCTCCCG CAGTCGACCTTAGTTCGGCCGGCCCCAATATTCGGGTTTGAGGATAATCTTCTCATTAAGCTAGCATCGGCAATC ATGTTCACAGCCAACCACATGCAAGAGAAGTTCTGGCCTGTCCATGTATGATACATCCTCAACTCCAAGCACGCA GGTATGCTAACCGCTCGGTAATTGGACAGTCCATTGATGTGGGTGAGGCACTAGAAAGGATGCTCGACGACGACT CCACCGCAGGCCAAACATTCGAGCTTTTCGGACCAAGGATGTACACAATGGGTCAGATCAAGTCCATGGTGGACA GGGAAACCTTCACAAAGAAGCGTCATGTGAACGTGCCTAAGGTTATACTTCAACCGTTGGCTCGGCTCCTTAACC GTTTTCTATGGTGGCACACGCTATCCGCAGACGAGGTAGAACGAGAATTCATCGACCAAGTCATCGACCCGACAG CAATGACGCTCAAGGATCTAGGAATTAATCCTGGTGACATTTCCAGCTTCACGTATCATTACCTTGTGAGTTGGG AAGAACAGCTTTCAGTAAAAAGCTAGCAAAAACACTAACATCCAGTAATAGCAAGGGTTCCGTAGCTCGAACTAC TATGACCTACCGCCTACTACAGAAAAGGAGAAAAAAGAGGACAAGAAATACATTCATGTGTTAAATGAACTTTAG |