Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|00036
Gene name
Locationscaffold_01:100045..101776
Strand-
Gene length (bp)1731
Transcript length (bp)1731
Coding sequence length (bp)1731
Protein length (aa) 577

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF13520 AA_permease_2 Amino acid permease 1.5E-53 52 521
PF00324 AA_permease Amino acid permease 1.0E-20 63 529

GO

GO Term Description Terminal node
GO:0022857 transmembrane transporter activity Yes
GO:0016020 membrane Yes
GO:0055085 transmembrane transport Yes
GO:0005575 cellular_component No
GO:0051179 localization No
GO:0008150 biological_process No
GO:0006810 transport No
GO:0009987 cellular process No
GO:0003674 molecular_function No
GO:0005215 transporter activity No
GO:0110165 cellular anatomical entity No
GO:0051234 establishment of localization No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 59 0.5

Transmembrane Domains

Domain # Start End Length
1 52 71 19
2 86 108 22
3 143 165 22
4 198 215 17
5 228 250 22
6 311 333 22
7 363 385 22
8 413 435 22
9 442 464 22
10 479 501 22
11 514 532 18

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Fungus Fungus in pure culture 3.61 1.03 6.20
Alive In ants, during behavior modification 187.01 80.61 293.41
Dead In ants, recently dead 52.62 29.17 76.07

Differential expression

Label1 Label2 Q-value Significant difference
Alive Fungus 0.000238 yes
Alive Dead 0.000238 yes
Dead Fungus 0.000238 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|00036
MPSPETIARSSDEATRRRKGRRRSTNDGDSQIQRDASDLAALGHPQALTRKFTLWSILALALCVLGTWTTFAQGL
SSGLVHGGPVAILWGLVLVALCNGCVAVSLGELCSSMPTALGQADWISRLASSSSSPSFSPHPSAARFASYLCAW
LNTFGWWTLGASQVAFMTDFGLSLHLIFIQDDAAAAEARDGLPPWRRLLVYLAITLLFTLVNLLSCRRDELLPSI
SNWVGIGFVALFIAFIVALPVAVAVRPGLNFQPAKFVFSGWINRTGWPDGVTWFAGLVQSAYGLTAFDSVIHMAE
EMPAPRRNVPLTMWLAVASGAISGFIFMLVCLFCIQDVERLLSPPSGFPFIEISQSTLGRDAAAVLIALFIVNGL
GQGVGILTSASRLTWSFARDGGLPLSRYWSLVDARWRVPARALWLQAGLISLIGLLYLFANTVLQAVLSVSTIAL
TLSYAMPIAALVIFGREALPPGDFRLGPRFGPLANAVSLAYCAVTTVFFFFPSSPSPAPGDMNYAIAVFGLMVVV
ALGFWLFEGRKSYMRTSSGGDADVLYAQDPDGVSTVMADDVNVKRPMGKKL*
Coding >Ophcf2|00036
ATGCCTTCACCCGAGACGATCGCCAGATCGTCAGACGAGGCAACCAGACGAAGAAAAGGACGCAGGAGAAGCACC
AACGATGGCGACTCTCAGATCCAACGCGACGCCTCAGACCTCGCCGCCCTCGGCCACCCTCAAGCCCTCACCCGC
AAATTCACCCTATGGAGCATCCTCGCCCTCGCCCTCTGCGTCCTCGGCACATGGACCACCTTCGCCCAGGGGCTA
AGCAGCGGTCTCGTTCATGGCGGCCCCGTCGCTATCCTCTGGGGCCTCGTTCTCGTCGCTCTCTGCAATGGCTGT
GTCGCCGTCTCCCTTGGTGAGCTGTGCAGTAGCATGCCCACCGCTCTGGGACAGGCCGACTGGATCTCGCGACTG
GCCTCCTCCTCTTCCTCCCCCTCCTTCTCCCCTCATCCTTCAGCCGCCCGCTTCGCCTCCTATCTCTGCGCCTGG
CTCAACACCTTTGGCTGGTGGACCCTAGGCGCATCTCAGGTTGCCTTCATGACCGACTTCGGCCTCTCCCTCCAC
CTCATCTTCATCCAAGACGACGCAGCCGCAGCCGAAGCCCGCGACGGCCTTCCCCCCTGGCGCCGCCTCCTCGTC
TACCTTGCCATCACCCTCCTCTTCACCCTTGTCAACCTTCTCTCCTGCCGCCGCGACGAACTTCTCCCCTCTATC
AGCAACTGGGTAGGCATCGGCTTCGTCGCCCTCTTCATCGCCTTCATCGTCGCCCTACCCGTCGCCGTCGCCGTT
CGTCCCGGCCTCAATTTTCAGCCTGCCAAATTTGTATTCTCCGGCTGGATCAATCGTACCGGCTGGCCTGATGGC
GTCACTTGGTTCGCTGGCCTCGTTCAGAGCGCTTACGGTCTTACCGCTTTTGACTCCGTCATTCACATGGCTGAG
GAGATGCCCGCGCCTCGCCGCAACGTGCCGCTGACAATGTGGCTAGCCGTAGCCTCGGGCGCCATCTCAGGCTTC
ATCTTCATGCTCGTCTGCCTCTTCTGCATCCAGGACGTCGAACGGCTACTCTCCCCTCCCTCGGGCTTCCCTTTT
ATCGAAATCAGCCAGTCGACGCTCGGCCGCGATGCCGCCGCCGTCCTCATCGCCCTCTTCATCGTCAACGGTCTG
GGCCAGGGAGTCGGCATCCTGACCTCGGCTTCGCGTCTTACATGGAGCTTCGCCAGGGACGGAGGCTTACCTCTA
AGCCGATACTGGAGCCTCGTCGACGCTCGATGGCGTGTCCCCGCCCGCGCCCTCTGGCTTCAAGCAGGCCTCATC
AGCCTCATAGGCCTCCTCTACCTCTTCGCCAACACCGTCCTTCAAGCCGTCCTAAGCGTCAGCACCATCGCCCTA
ACCCTCTCGTACGCAATGCCCATCGCCGCCCTTGTCATCTTCGGACGCGAAGCCCTTCCTCCCGGCGACTTTCGT
TTAGGCCCCCGCTTCGGCCCCTTGGCAAACGCCGTCTCTCTCGCTTACTGCGCCGTCACCACCGTCTTCTTCTTT
TTCCCTTCTTCGCCTAGCCCTGCGCCGGGCGATATGAATTACGCAATCGCCGTCTTTGGTCTCATGGTTGTCGTT
GCGCTGGGATTTTGGCTTTTTGAGGGGAGGAAGTCTTATATGCGGACTTCTTCGGGGGGTGATGCTGATGTGTTG
TATGCTCAGGACCCTGATGGTGTTTCGACGGTGATGGCCGATGACGTCAACGTGAAACGACCGATGGGAAAGAAG
TTATAG
Transcript >Ophcf2|00036
ATGCCTTCACCCGAGACGATCGCCAGATCGTCAGACGAGGCAACCAGACGAAGAAAAGGACGCAGGAGAAGCACC
AACGATGGCGACTCTCAGATCCAACGCGACGCCTCAGACCTCGCCGCCCTCGGCCACCCTCAAGCCCTCACCCGC
AAATTCACCCTATGGAGCATCCTCGCCCTCGCCCTCTGCGTCCTCGGCACATGGACCACCTTCGCCCAGGGGCTA
AGCAGCGGTCTCGTTCATGGCGGCCCCGTCGCTATCCTCTGGGGCCTCGTTCTCGTCGCTCTCTGCAATGGCTGT
GTCGCCGTCTCCCTTGGTGAGCTGTGCAGTAGCATGCCCACCGCTCTGGGACAGGCCGACTGGATCTCGCGACTG
GCCTCCTCCTCTTCCTCCCCCTCCTTCTCCCCTCATCCTTCAGCCGCCCGCTTCGCCTCCTATCTCTGCGCCTGG
CTCAACACCTTTGGCTGGTGGACCCTAGGCGCATCTCAGGTTGCCTTCATGACCGACTTCGGCCTCTCCCTCCAC
CTCATCTTCATCCAAGACGACGCAGCCGCAGCCGAAGCCCGCGACGGCCTTCCCCCCTGGCGCCGCCTCCTCGTC
TACCTTGCCATCACCCTCCTCTTCACCCTTGTCAACCTTCTCTCCTGCCGCCGCGACGAACTTCTCCCCTCTATC
AGCAACTGGGTAGGCATCGGCTTCGTCGCCCTCTTCATCGCCTTCATCGTCGCCCTACCCGTCGCCGTCGCCGTT
CGTCCCGGCCTCAATTTTCAGCCTGCCAAATTTGTATTCTCCGGCTGGATCAATCGTACCGGCTGGCCTGATGGC
GTCACTTGGTTCGCTGGCCTCGTTCAGAGCGCTTACGGTCTTACCGCTTTTGACTCCGTCATTCACATGGCTGAG
GAGATGCCCGCGCCTCGCCGCAACGTGCCGCTGACAATGTGGCTAGCCGTAGCCTCGGGCGCCATCTCAGGCTTC
ATCTTCATGCTCGTCTGCCTCTTCTGCATCCAGGACGTCGAACGGCTACTCTCCCCTCCCTCGGGCTTCCCTTTT
ATCGAAATCAGCCAGTCGACGCTCGGCCGCGATGCCGCCGCCGTCCTCATCGCCCTCTTCATCGTCAACGGTCTG
GGCCAGGGAGTCGGCATCCTGACCTCGGCTTCGCGTCTTACATGGAGCTTCGCCAGGGACGGAGGCTTACCTCTA
AGCCGATACTGGAGCCTCGTCGACGCTCGATGGCGTGTCCCCGCCCGCGCCCTCTGGCTTCAAGCAGGCCTCATC
AGCCTCATAGGCCTCCTCTACCTCTTCGCCAACACCGTCCTTCAAGCCGTCCTAAGCGTCAGCACCATCGCCCTA
ACCCTCTCGTACGCAATGCCCATCGCCGCCCTTGTCATCTTCGGACGCGAAGCCCTTCCTCCCGGCGACTTTCGT
TTAGGCCCCCGCTTCGGCCCCTTGGCAAACGCCGTCTCTCTCGCTTACTGCGCCGTCACCACCGTCTTCTTCTTT
TTCCCTTCTTCGCCTAGCCCTGCGCCGGGCGATATGAATTACGCAATCGCCGTCTTTGGTCTCATGGTTGTCGTT
GCGCTGGGATTTTGGCTTTTTGAGGGGAGGAAGTCTTATATGCGGACTTCTTCGGGGGGTGATGCTGATGTGTTG
TATGCTCAGGACCCTGATGGTGTTTCGACGGTGATGGCCGATGACGTCAACGTGAAACGACCGATGGGAAAGAAG
TTATAG
Gene >Ophcf2|00036
ATGCCTTCACCCGAGACGATCGCCAGATCGTCAGACGAGGCAACCAGACGAAGAAAAGGACGCAGGAGAAGCACC
AACGATGGCGACTCTCAGATCCAACGCGACGCCTCAGACCTCGCCGCCCTCGGCCACCCTCAAGCCCTCACCCGC
AAATTCACCCTATGGAGCATCCTCGCCCTCGCCCTCTGCGTCCTCGGCACATGGACCACCTTCGCCCAGGGGCTA
AGCAGCGGTCTCGTTCATGGCGGCCCCGTCGCTATCCTCTGGGGCCTCGTTCTCGTCGCTCTCTGCAATGGCTGT
GTCGCCGTCTCCCTTGGTGAGCTGTGCAGTAGCATGCCCACCGCTCTGGGACAGGCCGACTGGATCTCGCGACTG
GCCTCCTCCTCTTCCTCCCCCTCCTTCTCCCCTCATCCTTCAGCCGCCCGCTTCGCCTCCTATCTCTGCGCCTGG
CTCAACACCTTTGGCTGGTGGACCCTAGGCGCATCTCAGGTTGCCTTCATGACCGACTTCGGCCTCTCCCTCCAC
CTCATCTTCATCCAAGACGACGCAGCCGCAGCCGAAGCCCGCGACGGCCTTCCCCCCTGGCGCCGCCTCCTCGTC
TACCTTGCCATCACCCTCCTCTTCACCCTTGTCAACCTTCTCTCCTGCCGCCGCGACGAACTTCTCCCCTCTATC
AGCAACTGGGTAGGCATCGGCTTCGTCGCCCTCTTCATCGCCTTCATCGTCGCCCTACCCGTCGCCGTCGCCGTT
CGTCCCGGCCTCAATTTTCAGCCTGCCAAATTTGTATTCTCCGGCTGGATCAATCGTACCGGCTGGCCTGATGGC
GTCACTTGGTTCGCTGGCCTCGTTCAGAGCGCTTACGGTCTTACCGCTTTTGACTCCGTCATTCACATGGCTGAG
GAGATGCCCGCGCCTCGCCGCAACGTGCCGCTGACAATGTGGCTAGCCGTAGCCTCGGGCGCCATCTCAGGCTTC
ATCTTCATGCTCGTCTGCCTCTTCTGCATCCAGGACGTCGAACGGCTACTCTCCCCTCCCTCGGGCTTCCCTTTT
ATCGAAATCAGCCAGTCGACGCTCGGCCGCGATGCCGCCGCCGTCCTCATCGCCCTCTTCATCGTCAACGGTCTG
GGCCAGGGAGTCGGCATCCTGACCTCGGCTTCGCGTCTTACATGGAGCTTCGCCAGGGACGGAGGCTTACCTCTA
AGCCGATACTGGAGCCTCGTCGACGCTCGATGGCGTGTCCCCGCCCGCGCCCTCTGGCTTCAAGCAGGCCTCATC
AGCCTCATAGGCCTCCTCTACCTCTTCGCCAACACCGTCCTTCAAGCCGTCCTAAGCGTCAGCACCATCGCCCTA
ACCCTCTCGTACGCAATGCCCATCGCCGCCCTTGTCATCTTCGGACGCGAAGCCCTTCCTCCCGGCGACTTTCGT
TTAGGCCCCCGCTTCGGCCCCTTGGCAAACGCCGTCTCTCTCGCTTACTGCGCCGTCACCACCGTCTTCTTCTTT
TTCCCTTCTTCGCCTAGCCCTGCGCCGGGCGATATGAATTACGCAATCGCCGTCTTTGGTCTCATGGTTGTCGTT
GCGCTGGGATTTTGGCTTTTTGAGGGGAGGAAGTCTTATATGCGGACTTCTTCGGGGGGTGATGCTGATGTGTTG
TATGCTCAGGACCCTGATGGTGTTTCGACGGTGATGGCCGATGACGTCAACGTGAAACGACCGATGGGAAAGAAG
TTATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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