Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|00024
Gene name
Locationscaffold_01:70477..70771
Strand+
Gene length (bp)294
Transcript length (bp)294
Coding sequence length (bp)294
Protein length (aa) 98

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03959 FSH1 Serine hydrolase (FSH1) 1.4E-11 2 89

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 18 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Fungus Fungus in pure culture 53.20 14.98 91.42
Alive In ants, during behavior modification 67.27 21.15 113.39
Dead In ants, recently dead 53.47 15.05 91.89

Differential expression

Label1 Label2 Q-value Significant difference
Alive Fungus 0.493580 no
Alive Dead 0.433500 no
Dead Fungus 0.990447 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|00024
MRILCVHGAAINGDIFASKTEKLRALLPADYSFVWPDGEHEVTPIQSLSDTYPGPYLSHLEEITTRGIRRSIERL
EACIEEDGPFDGVMAICEVLSF*
Coding >Ophcf2|00024
ATGCGTATTCTCTGCGTCCACGGAGCCGCTATCAACGGCGACATCTTCGCGTCCAAGACGGAAAAGCTTCGAGCT
CTGCTGCCGGCCGACTACTCATTTGTATGGCCCGATGGCGAGCATGAGGTCACACCTATCCAGAGTCTCTCAGAC
ACCTACCCCGGACCCTACCTTTCGCACCTTGAGGAGATCACCACCCGCGGCATCCGCAGATCCATCGAGAGACTC
GAGGCTTGCATCGAGGAGGACGGTCCGTTTGACGGTGTCATGGCCATCTGCGAGGTGCTCTCCTTCTGA
Transcript >Ophcf2|00024
ATGCGTATTCTCTGCGTCCACGGAGCCGCTATCAACGGCGACATCTTCGCGTCCAAGACGGAAAAGCTTCGAGCT
CTGCTGCCGGCCGACTACTCATTTGTATGGCCCGATGGCGAGCATGAGGTCACACCTATCCAGAGTCTCTCAGAC
ACCTACCCCGGACCCTACCTTTCGCACCTTGAGGAGATCACCACCCGCGGCATCCGCAGATCCATCGAGAGACTC
GAGGCTTGCATCGAGGAGGACGGTCCGTTTGACGGTGTCATGGCCATCTGCGAGGTGCTCTCCTTCTGA
Gene >Ophcf2|00024
ATGCGTATTCTCTGCGTCCACGGAGCCGCTATCAACGGCGACATCTTCGCGTCCAAGACGGAAAAGCTTCGAGCT
CTGCTGCCGGCCGACTACTCATTTGTATGGCCCGATGGCGAGCATGAGGTCACACCTATCCAGAGTCTCTCAGAC
ACCTACCCCGGACCCTACCTTTCGCACCTTGAGGAGATCACCACCCGCGGCATCCGCAGATCCATCGAGAGACTC
GAGGCTTGCATCGAGGAGGACGGTCCGTTTGACGGTGTCATGGCCATCTGCGAGGTGCTCTCCTTCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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