Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophcf2\|00023
Gene name
Location	scaffold_01:69090..70159
Strand	-
Gene length (bp)	1069
Transcript length (bp)	963
Coding sequence length (bp)	963
Protein length (aa)	321

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF02668	TauD	Taurine catabolism dioxygenase TauD, TfdA family	1.2E-50	13	300

GO

GO Term	Description	Terminal node
GO:0016491	oxidoreductase activity	Yes
GO:0003824	catalytic activity	No
GO:0003674	molecular_function	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 22	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Fungus	Fungus in pure culture	27.36	12.79	41.93
Alive	In ants, during behavior modification	35.21	17.43	52.99
Dead	In ants, recently dead	23.45	10.50	36.41

Differential expression

Label1	Label2	Q-value	Significant difference
Alive	Fungus	0.283726	no
Alive	Dead	0.042612	yes
Dead	Fungus	0.572076	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophcf2\|00023 MPSALSQLPELTFRPLHPTFGAECHGADFSRPLSHDTIKGIRHAMAKYGVLVFRRTELDDARHQQFARCFGEPDM SAVDVSTALNDHTHRLSPFDELVDMGNVDDDGQLEPGDSLKSLLNKANNAFHVDCSYNPRRAGFSILRAHQLPPK GTGGATAFADTRTAYQDLDDETKREIRDYVAWHSILHSRRLGAPGLDLLQMLRHEDLPIGRHKLVQLHEPSGRPN LYIASHVYRLNDWTEQQSAPSIQRLFRHACQDKYVTTVNWENDGDMVMWDNTCVMHRACGGSFEGKHVRDMRRAT VLDNSSDAWGLNRRGEQAKL*
Coding	>Ophcf2\|00023 ATGCCATCAGCGTTGTCACAGTTGCCGGAGCTGACCTTTCGTCCGTTACACCCGACGTTTGGTGCAGAATGTCAC GGTGCCGACTTCTCGCGGCCGCTGAGCCATGATACCATTAAGGGCATTCGCCATGCCATGGCCAAGTACGGCGTC TTGGTCTTTCGCCGAACCGAGCTCGACGATGCAAGACACCAGCAGTTTGCGCGGTGCTTTGGCGAGCCCGACATG TCAGCTGTCGACGTCAGCACGGCACTCAACGATCATACTCATCGGCTGTCACCGTTTGACGAGCTCGTTGATATG GGCAACGTTGATGACGACGGCCAGCTCGAGCCCGGAGATAGCTTGAAGTCGCTGCTCAACAAGGCCAATAACGCG TTCCACGTCGACTGCAGCTACAACCCCCGCAGAGCCGGTTTCTCCATCCTCCGCGCTCATCAACTGCCACCCAAG GGAACGGGCGGCGCGACGGCCTTTGCCGACACGAGGACAGCCTACCAGGATCTTGACGACGAGACGAAGCGGGAA ATTCGGGACTACGTGGCGTGGCATTCAATCCTTCATAGCCGGAGGCTGGGAGCTCCCGGACTGGACCTGCTCCAG ATGCTGCGGCACGAAGACCTCCCGATCGGCCGTCATAAACTGGTACAGCTGCATGAGCCCAGCGGACGTCCGAAC CTGTACATTGCATCACATGTCTACCGCCTGAACGACTGGACCGAGCAGCAGAGCGCACCGTCGATCCAGCGGCTG TTTCGCCACGCCTGCCAGGACAAGTACGTCACCACCGTGAACTGGGAGAATGACGGAGACATGGTCATGTGGGAT AACACGTGCGTCATGCACCGCGCATGCGGCGGCTCGTTCGAAGGCAAACATGTGCGCGATATGAGGCGGGCAACG GTCTTGGACAACTCATCGGATGCGTGGGGACTCAACCGACGAGGGGAGCAGGCCAAGCTATAG
Transcript	>Ophcf2\|00023 ATGCCATCAGCGTTGTCACAGTTGCCGGAGCTGACCTTTCGTCCGTTACACCCGACGTTTGGTGCAGAATGTCAC GGTGCCGACTTCTCGCGGCCGCTGAGCCATGATACCATTAAGGGCATTCGCCATGCCATGGCCAAGTACGGCGTC TTGGTCTTTCGCCGAACCGAGCTCGACGATGCAAGACACCAGCAGTTTGCGCGGTGCTTTGGCGAGCCCGACATG TCAGCTGTCGACGTCAGCACGGCACTCAACGATCATACTCATCGGCTGTCACCGTTTGACGAGCTCGTTGATATG GGCAACGTTGATGACGACGGCCAGCTCGAGCCCGGAGATAGCTTGAAGTCGCTGCTCAACAAGGCCAATAACGCG TTCCACGTCGACTGCAGCTACAACCCCCGCAGAGCCGGTTTCTCCATCCTCCGCGCTCATCAACTGCCACCCAAG GGAACGGGCGGCGCGACGGCCTTTGCCGACACGAGGACAGCCTACCAGGATCTTGACGACGAGACGAAGCGGGAA ATTCGGGACTACGTGGCGTGGCATTCAATCCTTCATAGCCGGAGGCTGGGAGCTCCCGGACTGGACCTGCTCCAG ATGCTGCGGCACGAAGACCTCCCGATCGGCCGTCATAAACTGGTACAGCTGCATGAGCCCAGCGGACGTCCGAAC CTGTACATTGCATCACATGTCTACCGCCTGAACGACTGGACCGAGCAGCAGAGCGCACCGTCGATCCAGCGGCTG TTTCGCCACGCCTGCCAGGACAAGTACGTCACCACCGTGAACTGGGAGAATGACGGAGACATGGTCATGTGGGAT AACACGTGCGTCATGCACCGCGCATGCGGCGGCTCGTTCGAAGGCAAACATGTGCGCGATATGAGGCGGGCAACG GTCTTGGACAACTCATCGGATGCGTGGGGACTCAACCGACGAGGGGAGCAGGCCAAGCTATAG
Gene	>Ophcf2\|00023 ATGCCATCAGCGTTGTCACAGTTGCCGGAGCTGACCTTTCGTCCGTTACACCCGACGTTTGGTGCAGAATGTCAC GGTGCCGACTTCTCGCGGCCGCTGAGCCATGATACCATTAAGGGCATTCGCCATGCCATGGCCAAGTACGGCGTC TTGGTCTTTCGCCGAACCGAGCTCGACGATGCAAGACACCAGCAGTTTGCGCGGTGCTTTGGCGAGCCCGACATG TCAGCTGTCGACGTCAGCACGGCACTCAACGATCATACTCATCGGCTGTCACCGTTTGACGAGCTCGTTGATATG GGCAACGTTGATGACGACGGCCAGCTCGAGCCCGGAGATAGCTTGAAGTCGCTGCTCAACAAGGCCAATAACGCG TTCCACGTCGACTGCAGCTACAACCCCCGCAGAGCCGGTTTCTCCATCCTCCGCGCTCATCAACTGCCACCCAAG GGAACGGGCGGCGCGACGGCCTTTGCCGACACGAGGACAGCCTACCAGGATCTTGACGACGAGACGAAGCGGGAA ATTCGGGACTACGTGGCGTGGCATTCAATCCTTCATAGCCGGAGGCTGGGAGCTCCCGGACTGGACCTGCTCCAG ATGCTGCGGCACGAAGACCTCCCGATCGGCCGTCATAAACTGGTACAGCTGCATGAGCCCAGCGGACGTCCGAAC CTGTACATTGCATCACATGTCTACCGCCTGAACGACTGGACCGAGCAGCAGAGCGCACCGTCGATCCAGCGGCTG TTTCGCCACGCCTGCCAGGACAAGTACGTCACCACCGTGAACTGGGAGAATGACGGAGACATGGTCATGTGGGTA GGTTGACATCTTTGACGTTCCCCGACCCTACGTGCACATATATGTAGATAGATATCTATGTACAAACGAGACTGA CTTTTGATGAACTGATTGTTGTTGGTAGGATAACACGTGCGTCATGCACCGCGCATGCGGCGGCTCGTTCGAAGG CAAACATGTGCGCGATATGAGGCGGGCAACGGTCTTGGACAACTCATCGGATGCGTGGGGACTCAACCGACGAGG GGAGCAGGCCAAGCTATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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