Fungal Genomics

at Utrecht University

PFAM Domain


General information

PFAM domainPF04851
Short nameResIII
Long nameType III restriction enzyme, res subunit
Proteins with at least one of this domain35
Total domain count37
More informationPFAM website

Proteins with this PFAM domain

Note: all PFAM domains are shown for these proteins
Short name Long name E-value Start End Name
protein ID PFAM
Ophcf2|00081 PF00270 DEAD DEAD/DEAH box helicase 5.0E-42 94 271
PF04851 ResIII Type III restriction enzyme, res subunit 2.6E-06 106 264
PF00271 Helicase_C Helicase conserved C-terminal domain 4.6E-19 318 425
Ophcf2|00288 PF04851 ResIII Type III restriction enzyme, res subunit 5.1E-22 141 297
PF00270 DEAD DEAD/DEAH box helicase 9.9E-17 142 302
PF00271 Helicase_C Helicase conserved C-terminal domain 1.9E-22 498 607
Ophcf2|00359 PF04851 ResIII Type III restriction enzyme, res subunit 1.8E-06 778 950
PF00270 DEAD DEAD/DEAH box helicase 1.3E-21 782 954
PF00271 Helicase_C Helicase conserved C-terminal domain 7.6E-14 994 1100
PF16124 RecQ_Zn_bind RecQ zinc-binding 7.2E-15 1113 1178
PF09382 RQC RQC domain 5.3E-14 1184 1295
Ophcf2|00403 PF00270 DEAD DEAD/DEAH box helicase 3.2E-45 49 213
PF04851 ResIII Type III restriction enzyme, res subunit 4.0E-05 62 208
PF00271 Helicase_C Helicase conserved C-terminal domain 8.0E-31 250 358
Ophcf2|00708 PF09416 UPF1_Zn_bind RNA helicase (UPF2 interacting domain) 3.0E-73 128 278
PF18141 UPF1_1B_dom RNA helicase UPF1, 1B domain 3.9E-33 332 426
PF04851 ResIII Type III restriction enzyme, res subunit 4.7E-06 483 554
PF13086 AAA_11 AAA domain 6.7E-23 483 584
PF13604 AAA_30 AAA domain 6.5E-12 483 681
PF13245 AAA_19 AAA domain 1.2E-10 487 679
PF13086 AAA_11 AAA domain 1.5E-31 582 685
PF13087 AAA_12 AAA domain 3.6E-59 692 888
Ophcf2|00777 PF01663 Phosphodiest Type I phosphodiesterase / nucleotide pyrophosphatase 3.6E-96 234 573
PF04851 ResIII Type III restriction enzyme, res subunit 2.7E-05 1163 1348
PF00176 SNF2-rel_dom SNF2-related domain 1.6E-66 1179 1485
PF13920 zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 6.1E-07 1520 1579
PF13923 zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 1.1E-07 1522 1554
PF00097 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 5.7E-07 1523 1574
PF13445 zf-RING_UBOX RING-type zinc-finger 7.0E-07 1523 1572
PF00271 Helicase_C Helicase conserved C-terminal domain 1.9E-14 1717 1830
Ophcf2|00950 PF04851 ResIII Type III restriction enzyme, res subunit 1.2E-09 180 340
PF00176 SNF2-rel_dom SNF2-related domain 2.2E-82 190 464
PF00271 Helicase_C Helicase conserved C-terminal domain 1.0E-16 488 599
PF09110 HAND HAND 6.4E-34 752 856
PF09111 SLIDE SLIDE 5.8E-44 914 1029
Ophcf2|01343 PF00176 SNF2-rel_dom SNF2-related domain 4.8E-72 332 710
PF04851 ResIII Type III restriction enzyme, res subunit 2.9E-07 398 578
PF00271 Helicase_C Helicase conserved C-terminal domain 2.5E-15 743 844
Ophcf2|01702 PF08797 HIRAN HIRAN domain 3.1E-23 130 247
PF04851 ResIII Type III restriction enzyme, res subunit 3.2E-05 386 639
PF00176 SNF2-rel_dom SNF2-related domain 2.1E-70 391 774
PF00097 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 2.1E-04 862 905
PF00271 Helicase_C Helicase conserved C-terminal domain 2.4E-13 947 1053
Ophcf2|01745 PF00270 DEAD DEAD/DEAH box helicase 3.5E-48 146 315
PF04851 ResIII Type III restriction enzyme, res subunit 3.4E-05 166 309
PF00271 Helicase_C Helicase conserved C-terminal domain 1.5E-25 359 491
Ophcf2|01793 PF08658 Rad54_N Rad54 N terminal 1.3E-47 1 168
PF04851 ResIII Type III restriction enzyme, res subunit 1.5E-10 192 370
PF00176 SNF2-rel_dom SNF2-related domain 1.8E-64 195 502
PF00271 Helicase_C Helicase conserved C-terminal domain 9.4E-16 542 652
Ophcf2|02769 PF00270 DEAD DEAD/DEAH box helicase 3.9E-49 106 270
PF04851 ResIII Type III restriction enzyme, res subunit 1.1E-06 126 267
PF00271 Helicase_C Helicase conserved C-terminal domain 2.9E-24 355 450
PF08147 DBP10CT DBP10CT (NUC160) domain 8.3E-22 737 802
Ophcf2|03117 PF00270 DEAD DEAD/DEAH box helicase 4.6E-46 100 271
PF04851 ResIII Type III restriction enzyme, res subunit 3.5E-06 115 263
PF00271 Helicase_C Helicase conserved C-terminal domain 2.3E-24 317 418
PF13959 DUF4217 Domain of unknown function (DUF4217) 4.2E-20 460 520
Ophcf2|03405 PF13892 DBINO DNA-binding domain 2.1E-48 587 718
PF04851 ResIII Type III restriction enzyme, res subunit 7.1E-07 827 995
PF00176 SNF2-rel_dom SNF2-related domain 2.8E-65 845 1130
PF00271 Helicase_C Helicase conserved C-terminal domain 5.8E-19 1395 1507
Ophcf2|03520 PF00176 SNF2-rel_dom SNF2-related domain 1.3E-50 423 755
PF04851 ResIII Type III restriction enzyme, res subunit 1.7E-08 424 588
PF00097 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 4.1E-06 769 808
PF00271 Helicase_C Helicase conserved C-terminal domain 3.8E-15 847 961
Ophcf2|04109 PF04851 ResIII Type III restriction enzyme, res subunit 8.8E-09 272 456
PF00270 DEAD DEAD/DEAH box helicase 1.8E-26 273 459
PF02889 Sec63 Sec63 Brl domain 2.5E-80 784 1087
PF00270 DEAD DEAD/DEAH box helicase 3.9E-19 1133 1294
PF04851 ResIII Type III restriction enzyme, res subunit 2.2E-07 1138 1265
PF00271 Helicase_C Helicase conserved C-terminal domain 2.9E-06 1410 1497
PF02889 Sec63 Sec63 Brl domain 5.8E-46 1625 1881
Ophcf2|04156 PF04851 ResIII Type III restriction enzyme, res subunit 1.6E-24 39 201
PF00270 DEAD DEAD/DEAH box helicase 2.8E-11 44 204
PF00271 Helicase_C Helicase conserved C-terminal domain 1.5E-13 281 378
Ophcf2|04554 PF18149 Helicase_PWI N-terminal helicase PWI domain 4.3E-31 288 400
PF00270 DEAD DEAD/DEAH box helicase 6.6E-27 523 697
PF04851 ResIII Type III restriction enzyme, res subunit 3.6E-14 523 697
PF00271 Helicase_C Helicase conserved C-terminal domain 8.4E-07 814 901
PF02889 Sec63 Sec63 Brl domain 1.1E-92 1023 1330
PF00270 DEAD DEAD/DEAH box helicase 7.4E-18 1374 1539
PF04851 ResIII Type III restriction enzyme, res subunit 7.9E-06 1376 1507
PF02889 Sec63 Sec63 Brl domain 6.7E-64 1859 2175
Ophcf2|04576 PF00270 DEAD DEAD/DEAH box helicase 1.7E-46 42 208
PF04851 ResIII Type III restriction enzyme, res subunit 5.0E-05 62 202
PF00271 Helicase_C Helicase conserved C-terminal domain 2.2E-31 246 353
PF16203 ERCC3_RAD25_C ERCC3/RAD25/XPB C-terminal helicase 4.3E-07 246 355
Ophcf2|04912 PF13625 Helicase_C_3 Helicase conserved C-terminal domain 4.5E-34 102 226
PF04851 ResIII Type III restriction enzyme, res subunit 9.5E-15 341 498
PF16203 ERCC3_RAD25_C ERCC3/RAD25/XPB C-terminal helicase 9.0E-125 524 759
PF00271 Helicase_C Helicase conserved C-terminal domain 1.2E-11 568 674
Ophcf2|04921 PF08880 QLQ QLQ 1.9E-10 161 194
PF07529 HSA HSA domain 3.7E-17 398 468
PF04851 ResIII Type III restriction enzyme, res subunit 1.1E-08 562 721
PF00176 SNF2-rel_dom SNF2-related domain 4.9E-78 565 858
PF00271 Helicase_C Helicase conserved C-terminal domain 3.2E-18 882 995
PF14619 SnAC Snf2-ATP coupling, chromatin remodelling complex 1.9E-16 1092 1158
PF00439 Bromodomain Bromodomain 6.6E-18 1304 1376
Ophcf2|04987 PF00270 DEAD DEAD/DEAH box helicase 6.6E-32 316 550
PF04851 ResIII Type III restriction enzyme, res subunit 8.9E-06 321 394
PF00271 Helicase_C Helicase conserved C-terminal domain 4.3E-19 656 755
Ophcf2|05091 PF04851 ResIII Type III restriction enzyme, res subunit 2.9E-07 890 1076
PF00176 SNF2-rel_dom SNF2-related domain 3.1E-44 908 1209
PF00271 Helicase_C Helicase conserved C-terminal domain 6.3E-21 1264 1368
Ophcf2|05126 PF04851 ResIII Type III restriction enzyme, res subunit 4.0E-14 58 226
PF00270 DEAD DEAD/DEAH box helicase 2.2E-19 61 227
PF00271 Helicase_C Helicase conserved C-terminal domain 1.0E-14 424 529
PF03368 Dicer_dimer Dicer dimerisation domain 4.4E-21 596 686
PF14622 Ribonucleas_3_3 Ribonuclease-III-like 7.6E-11 980 1099
PF00636 Ribonuclease_3 Ribonuclease III domain 3.1E-22 982 1091
PF00636 Ribonuclease_3 Ribonuclease III domain 1.0E-14 1170 1304
Ophcf2|05390 PF04851 ResIII Type III restriction enzyme, res subunit 2.9E-05 151 323
PF00176 SNF2-rel_dom SNF2-related domain 6.3E-51 169 434
PF00271 Helicase_C Helicase conserved C-terminal domain 1.8E-18 529 640
PF14773 VIGSSK Helicase-associated putative binding domain, C-terminal 2.5E-26 762 820
Ophcf2|05416 PF04851 ResIII Type III restriction enzyme, res subunit 3.1E-08 808 968
PF00176 SNF2-rel_dom SNF2-related domain 1.3E-69 827 1107
PF00271 Helicase_C Helicase conserved C-terminal domain 8.5E-18 1371 1483
PF00069 Pkinase Protein kinase domain 2.9E-64 1671 1918
PF07714 PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase 3.0E-39 1673 1913
PF14531 Kinase-like Kinase-like 1.6E-06 1766 1887
Ophcf2|05470 PF15446 zf-PHD-like PHD/FYVE-zinc-finger like domain 2.1E-66 417 586
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.2E-07 621 660
PF04851 ResIII Type III restriction enzyme, res subunit 4.4E-05 793 956
PF00176 SNF2-rel_dom SNF2-related domain 3.3E-53 805 1079
PF11496 HDA2-3 Class II histone deacetylase complex subunits 2 and 3 2.3E-08 1022 1240
PF00271 Helicase_C Helicase conserved C-terminal domain 3.2E-19 1104 1217
Ophcf2|05676 PF16399 Aquarius_N Intron-binding protein aquarius N-terminus 0.0E+00 39 818
PF13086 AAA_11 AAA domain 3.2E-20 830 1119
PF04851 ResIII Type III restriction enzyme, res subunit 2.0E-05 834 882
PF13087 AAA_12 AAA domain 2.3E-27 1129 1321
Ophcf2|06164 PF00270 DEAD DEAD/DEAH box helicase 2.0E-37 10 177
PF04851 ResIII Type III restriction enzyme, res subunit 6.0E-08 25 172
PF00271 Helicase_C Helicase conserved C-terminal domain 3.8E-24 215 323
Ophcf2|06286 PF00106 adh_short short chain dehydrogenase 5.5E-16 56 272
PF01370 Epimerase NAD dependent epimerase/dehydratase family 9.8E-07 58 242
PF08659 KR KR domain 2.0E-06 58 169
PF13561 adh_short_C2 Enoyl-(Acyl carrier protein) reductase 6.2E-07 64 199
PF04851 ResIII Type III restriction enzyme, res subunit 8.4E-13 466 635
PF00270 DEAD DEAD/DEAH box helicase 1.8E-13 467 635
PF00271 Helicase_C Helicase conserved C-terminal domain 2.2E-16 794 909
PF03368 Dicer_dimer Dicer dimerisation domain 4.2E-20 988 1070
PF00636 Ribonuclease_3 Ribonuclease III domain 5.9E-18 1412 1518
PF14622 Ribonucleas_3_3 Ribonuclease-III-like 6.6E-11 1593 1674
PF00636 Ribonuclease_3 Ribonuclease III domain 4.8E-20 1614 1730
Ophcf2|06318 PF04851 ResIII Type III restriction enzyme, res subunit 4.4E-10 135 300
PF00176 SNF2-rel_dom SNF2-related domain 1.0E-68 150 414
PF00271 Helicase_C Helicase conserved C-terminal domain 7.7E-20 599 710
Ophcf2|06324 PF00270 DEAD DEAD/DEAH box helicase 1.1E-45 77 246
PF04851 ResIII Type III restriction enzyme, res subunit 1.2E-07 89 239
PF00271 Helicase_C Helicase conserved C-terminal domain 1.1E-23 283 393
PF13959 DUF4217 Domain of unknown function (DUF4217) 1.1E-23 435 495
Ophcf2|06350 PF04851 ResIII Type III restriction enzyme, res subunit 3.6E-08 67 243
PF00270 DEAD DEAD/DEAH box helicase 2.7E-35 69 244
PF13604 AAA_30 AAA domain 9.6E-07 69 208
Ophcf2|06489 PF04851 ResIII Type III restriction enzyme, res subunit 2.3E-05 220 401
PF00270 DEAD DEAD/DEAH box helicase 8.1E-30 221 434
PF00271 Helicase_C Helicase conserved C-terminal domain 3.3E-18 502 616
Ophcf2|06624 PF00270 DEAD DEAD/DEAH box helicase 1.0E-15 734 895
PF04851 ResIII Type III restriction enzyme, res subunit 1.1E-10 737 894
PF00271 Helicase_C Helicase conserved C-terminal domain 1.6E-07 1245 1316

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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