Fungal Genomics

at Utrecht University

PFAM Domain


General information

PFAM domainPF00076
Short nameRRM_1
Long nameRNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Proteins with at least one of this domain59
Total domain count89
More informationPFAM website

Proteins with this PFAM domain

Note: all PFAM domains are shown for these proteins
Short name Long name E-value Start End Name
protein ID PFAM
Ophcf2|00211 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.6E-09 323 375
Ophcf2|00255 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.8E-21 4 73
Ophcf2|00296 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.2E-17 16 82
Ophcf2|00422 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.5E-15 88 156
PF13865 FoP_duplication C-terminal duplication domain of Friend of PRMT1 8.5E-06 223 277
Ophcf2|00501 PF03467 Smg4_UPF3 Smg-4/UPF3 family 2.1E-46 59 229
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8.3E-06 477 520
Ophcf2|00585 PF00929 RNase_T Exonuclease 2.6E-06 19 133
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.9E-08 255 322
PF00641 zf-RanBP Zn-finger in Ran binding protein and others 5.7E-11 350 377
PF00641 zf-RanBP Zn-finger in Ran binding protein and others 4.3E-07 430 459
Ophcf2|00621 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.4E-15 15 85
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.7E-15 103 172
Ophcf2|00899 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.4E-09 596 663
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.6E-10 673 736
PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.4E-05 759 844
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.7E-16 765 831
PF16842 RRM_occluded Occluded RNA-recognition motif 1.2E-27 877 953
Ophcf2|00939 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.4E-15 125 173
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.8E-16 208 265
Ophcf2|00947 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.9E-16 85 154
Ophcf2|00993 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.5E-14 73 141
Ophcf2|01120 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.1E-05 9 69
Ophcf2|01213 PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.1E-02 47 135
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.0E-17 59 128
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.7E-17 147 215
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.7E-20 240 308
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.5E-07 343 375
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.6E-08 413 450
PF00658 PABP Poly-adenylate binding protein, unique domain 1.0E-26 663 727
Ophcf2|01371 PF14570 zf-RING_4 RING/Ubox like zinc-binding domain 5.0E-20 15 62
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.1E-07 123 200
Ophcf2|01517 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.4E-10 9 72
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.1E-10 106 169
Ophcf2|01583 PF04818 CID CID domain 8.5E-11 24 143
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.3E-06 438 487
Ophcf2|01808 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.9E-11 10 80
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.2E-12 171 236
Ophcf2|01878 PF10378 RRM Putative RRM domain 1.6E-07 81 121
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8.6E-11 294 348
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.2E-11 519 575
Ophcf2|01918 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.4E-15 52 121
Ophcf2|02258 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.1E-08 6 69
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.7E-17 305 372
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.3E-09 487 549
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.4E-13 598 672
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.3E-15 703 771
Ophcf2|02442 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.3E-14 40 109
Ophcf2|02488 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.2E-06 21 65
Ophcf2|02791 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.0E-10 247 306
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.4E-08 335 397
Ophcf2|02958 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.0E-10 235 299
Ophcf2|03143 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.0E-10 316 379
Ophcf2|03246 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.3E-14 106 174
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.3E-15 225 296
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.3E-17 393 461
Ophcf2|03579 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.8E-08 65 129
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.6E-14 157 227
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8.4E-16 293 356
Ophcf2|03784 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.1E-04 181 251
PF01424 R3H R3H domain 3.0E-08 323 379
Ophcf2|03837 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.1E-12 35 102
Ophcf2|03898 PF12353 eIF3g Eukaryotic translation initiation factor 3 subunit G 2.2E-43 29 155
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.9E-15 218 283
Ophcf2|03957 PF01480 PWI PWI domain 1.1E-06 11 78
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.8E-05 317 378
Ophcf2|04001 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.3E-15 50 118
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.0E-12 250 331
Ophcf2|04074 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.9E-09 15 78
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.0E-06 164 224
Ophcf2|04229 PF05383 La La domain 9.3E-19 184 241
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.4E-08 290 345
Ophcf2|04345 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.8E-14 157 226
Ophcf2|04378 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.3E-10 380 451
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.7E-05 511 571
Ophcf2|04425 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.9E-21 10 80
PF14327 CSTF2_hinge Hinge domain of cleavage stimulation factor subunit 2 1.1E-32 122 201
PF14304 CSTF_C Transcription termination and cleavage factor C-terminal 5.0E-10 263 293
Ophcf2|04453 PF12220 U1snRNP70_N U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 3.6E-26 4 93
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.2E-14 106 182
Ophcf2|04455 PF02136 NTF2 Nuclear transport factor 2 (NTF2) domain 8.0E-23 44 158
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.1E-05 429 490
Ophcf2|05490 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.4E-10 200 258
Ophcf2|05669 PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.8E-06 141 231
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.3E-17 150 219
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.0E-20 240 310
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.0E-14 367 430
Ophcf2|05685 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.7E-15 158 224
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.1E-20 258 327
PF15519 RBM39linker linker between RRM2 and RRM3 domains in RBM39 protein 1.5E-23 384 458
Ophcf2|05812 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.2E-08 7 59
Ophcf2|05919 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.2E-21 31 100
Ophcf2|05984 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.3E-12 81 147
Ophcf2|06031 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.0E-14 58 127
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8.8E-14 163 231
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.7E-14 351 410
Ophcf2|06078 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.2E-19 77 146
Ophcf2|06145 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.1E-07 142 209
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.5E-10 327 398
Ophcf2|06215 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.2E-12 396 458
Ophcf2|06239 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.1E-09 216 291
Ophcf2|06253 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.2E-05 72 132
Ophcf2|06480 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.8E-11 441 499
PF00806 PUF Pumilio-family RNA binding repeat 2.6E-06 661 693
PF00806 PUF Pumilio-family RNA binding repeat 4.1E-02 696 729
PF00806 PUF Pumilio-family RNA binding repeat 1.7E-02 739 756
Ophcf2|06680 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.4E-14 11 82
Ophcf2|06802 PF16131 Torus Torus domain 2.8E-41 48 153
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.2E-08 189 240
Ophcf2|06899 PF00160 Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 2.0E-33 3 169
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.5E-16 252 322
Ophcf2|07190 PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.8E-07 16 121
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.4E-07 29 100
Ophcf2|07222 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8.9E-17 271 340
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.3E-16 374 439
Ophcf2|07244 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.6E-04 299 351
Ophcf2|07333 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.0E-16 235 304

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