Fungal Genomics

at Utrecht University

PFAM Domain


General information

PFAM domainPF00004
Short nameAAA
Long nameATPase family associated with various cellular activities (AAA)
Proteins with at least one of this domain46
Total domain count56
More informationPFAM website

Proteins with this PFAM domain

Note: all PFAM domains are shown for these proteins
Short name Long name E-value Start End Name
protein ID PFAM
Ophcf2|00100 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 2.3E-16 105 181
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.1E-39 240 372
PF17862 AAA_lid_3 AAA+ lid domain 7.3E-07 395 435
Ophcf2|00117 PF01426 BAH BAH domain 4.4E-09 81 199
PF13191 AAA_16 AAA ATPase domain 1.5E-09 323 461
PF13401 AAA_22 AAA domain 5.8E-08 345 456
PF00004 AAA ATPase family associated with various cellular activities (AAA) 7.2E-16 349 491
PF17872 AAA_lid_10 AAA lid domain 2.9E-10 522 557
Ophcf2|00365 PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.8E-40 220 351
PF17862 AAA_lid_3 AAA+ lid domain 3.7E-07 375 416
Ophcf2|00539 PF04212 MIT MIT (microtubule interacting and transport) domain 8.1E-15 7 71
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 9.1E-07 156 239
PF00004 AAA ATPase family associated with various cellular activities (AAA) 7.0E-42 164 292
PF09336 Vps4_C Vps4 C terminal oligomerisation domain 9.2E-24 366 426
Ophcf2|00605 PF00004 AAA ATPase family associated with various cellular activities (AAA) 6.5E-41 241 374
PF17862 AAA_lid_3 AAA+ lid domain 6.7E-11 404 442
PF01434 Peptidase_M41 Peptidase family M41 8.3E-66 458 638
Ophcf2|00634 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 2.7E-11 89 144
PF05673 DUF815 Protein of unknown function (DUF815) 5.0E-06 162 267
PF07728 AAA_5 AAA domain (dynein-related subfamily) 3.0E-08 201 323
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.5E-44 202 334
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 1.5E-07 202 295
Ophcf2|01404 PF08740 BCS1_N BCS1 N terminal 6.4E-53 48 240
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.2E-09 278 342
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.0E-05 382 427
Ophcf2|01710 PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.3E-08 582 731
Ophcf2|01852 PF06068 TIP49 TIP49 P-loop domain 2.7E-163 15 366
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.5E-06 67 119
PF17856 TIP49_C TIP49 AAA-lid domain 2.8E-23 375 440
Ophcf2|01908 PF02861 Clp_N Clp amino terminal domain, pathogenicity island component 5.0E-04 110 157
PF00004 AAA ATPase family associated with various cellular activities (AAA) 6.7E-14 221 338
PF17871 AAA_lid_9 AAA lid domain 4.0E-31 362 462
PF00158 Sigma54_activat Sigma-54 interaction domain 3.2E-06 627 745
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 2.2E-44 630 791
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.1E-09 631 749
PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.1E-09 632 750
PF10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein 1.7E-23 798 880
Ophcf2|01954 PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain 8.8E-18 40 121
PF02933 CDC48_2 Cell division protein 48 (CDC48), domain 2 1.5E-07 142 203
PF07728 AAA_5 AAA domain (dynein-related subfamily) 3.8E-06 255 374
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.2E-47 256 385
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 2.3E-07 256 353
PF17862 AAA_lid_3 AAA+ lid domain 4.3E-13 408 447
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.7E-47 530 663
PF17862 AAA_lid_3 AAA+ lid domain 1.3E-06 685 724
PF09336 Vps4_C Vps4 C terminal oligomerisation domain 1.1E-04 728 779
Ophcf2|01961 PF12775 AAA_7 P-loop containing dynein motor region 1.1E-06 279 326
PF13604 AAA_30 AAA domain 5.8E-22 283 492
PF05970 PIF1 PIF1-like helicase 3.4E-47 284 493
PF13401 AAA_22 AAA domain 1.1E-07 298 427
PF13245 AAA_19 AAA domain 3.8E-12 299 435
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.4E-04 302 394
PF05970 PIF1 PIF1-like helicase 3.0E-13 510 590
Ophcf2|02306 PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.2E-09 497 608
Ophcf2|02780 PF02190 LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain 2.1E-29 178 466
PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.9E-21 618 755
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.4E-06 618 751
PF05362 Lon_C Lon protease (S16) C-terminal proteolytic domain 1.0E-64 898 1103
PF13541 ChlI Subunit ChlI of Mg-chelatase 4.3E-07 954 1073
Ophcf2|02812 PF00628 PHD PHD-finger 1.9E-10 498 545
PF13831 PHD_2 PHD-finger 2.3E-07 511 544
PF13191 AAA_16 AAA ATPase domain 8.8E-09 597 754
PF13401 AAA_22 AAA domain 3.0E-08 618 760
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.9E-08 621 778
PF14629 ORC4_C Origin recognition complex (ORC) subunit 4 C-terminus 1.4E-47 793 982
Ophcf2|02838 PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.0E-07 252 371
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.9E-39 513 649
PF17862 AAA_lid_3 AAA+ lid domain 1.6E-09 672 707
Ophcf2|03025 PF13191 AAA_16 AAA ATPase domain 1.5E-08 300 424
PF00004 AAA ATPase family associated with various cellular activities (AAA) 9.5E-05 304 456
PF12796 Ank_2 Ankyrin repeats (3 copies) 2.4E-10 935 1028
PF13637 Ank_4 Ankyrin repeats (many copies) 3.2E-06 966 1006
PF12796 Ank_2 Ankyrin repeats (3 copies) 3.6E-11 967 1048
Ophcf2|03264 PF07724 AAA_2 AAA domain (Cdc48 subfamily) 3.6E-31 189 432
PF07728 AAA_5 AAA domain (dynein-related subfamily) 8.3E-06 191 267
PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.5E-12 192 296
PF10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein 7.0E-09 439 510
Ophcf2|03396 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 2.9E-13 125 179
PF05673 DUF815 Protein of unknown function (DUF815) 1.4E-05 233 303
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.0E-41 238 370
PF17862 AAA_lid_3 AAA+ lid domain 2.2E-11 393 436
Ophcf2|03501 PF08740 BCS1_N BCS1 N terminal 1.1E-44 86 290
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.1E-09 328 409
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.3E-05 479 524
Ophcf2|03692 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 1.2E-06 56 104
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.1E-06 168 289
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.6E-43 169 301
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 1.2E-06 169 262
PF17862 AAA_lid_3 AAA+ lid domain 2.5E-13 325 367
Ophcf2|04080 PF02190 LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain 8.4E-24 8 257
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.5E-22 476 614
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.5E-07 476 611
PF05362 Lon_C Lon protease (S16) C-terminal proteolytic domain 9.6E-68 702 905
PF13541 ChlI Subunit ChlI of Mg-chelatase 1.7E-06 751 877
Ophcf2|04217 PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.3E-11 284 412
PF07728 AAA_5 AAA domain (dynein-related subfamily) 9.3E-05 284 363
Ophcf2|04290 PF00004 AAA ATPase family associated with various cellular activities (AAA) 8.7E-37 525 651
PF17862 AAA_lid_3 AAA+ lid domain 1.5E-08 674 709
Ophcf2|04339 PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 4.6E-10 116 234
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.2E-12 148 255
PF16193 AAA_assoc_2 AAA C-terminal domain 5.8E-20 282 351
PF12002 MgsA_C MgsA AAA+ ATPase C terminal 5.2E-53 352 493
Ophcf2|04479 PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.2E-42 631 766
PF17862 AAA_lid_3 AAA+ lid domain 3.5E-08 791 824
Ophcf2|04518 PF07728 AAA_5 AAA domain (dynein-related subfamily) 5.3E-12 3 97
PF17867 AAA_lid_7 Midasin AAA lid domain 7.2E-21 124 239
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.3E-05 307 352
PF07728 AAA_5 AAA domain (dynein-related subfamily) 3.2E-06 464 562
PF17865 AAA_lid_5 Midasin AAA lid domain 6.6E-31 576 680
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.3E-19 753 888
PF17867 AAA_lid_7 Midasin AAA lid domain 5.5E-13 900 994
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.2E-06 1044 1093
PF07728 AAA_5 AAA domain (dynein-related subfamily) 4.0E-13 1157 1243
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.4E-04 1426 1470
PF07726 AAA_3 ATPase family associated with various cellular activities (AAA) 5.0E-09 1426 1565
PF07728 AAA_5 AAA domain (dynein-related subfamily) 5.6E-18 1426 1564
PF17867 AAA_lid_7 Midasin AAA lid domain 1.1E-11 1576 1672
PF07728 AAA_5 AAA domain (dynein-related subfamily) 5.9E-05 1879 1959
Ophcf2|04547 PF03215 Rad17 Rad17 P-loop domain 1.3E-08 29 90
PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 1.2E-09 50 200
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.0E-15 69 196
PF08542 Rep_fac_C Replication factor C C-terminal domain 1.6E-20 283 370
Ophcf2|04667 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 3.5E-11 59 114
PF07728 AAA_5 AAA domain (dynein-related subfamily) 4.2E-05 171 292
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.3E-42 172 305
PF17862 AAA_lid_3 AAA+ lid domain 4.6E-10 327 370
Ophcf2|04707 PF08740 BCS1_N BCS1 N terminal 1.4E-38 54 233
PF00004 AAA ATPase family associated with various cellular activities (AAA) 8.3E-17 269 393
Ophcf2|04949 PF07728 AAA_5 AAA domain (dynein-related subfamily) 8.0E-05 348 415
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.8E-41 349 478
PF17862 AAA_lid_3 AAA+ lid domain 4.0E-09 501 543
PF01434 Peptidase_M41 Peptidase family M41 2.5E-52 560 739
Ophcf2|05058 PF13173 AAA_14 AAA domain 2.3E-06 65 168
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.5E-11 66 183
PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 2.3E-06 106 187
PF08542 Rep_fac_C Replication factor C C-terminal domain 3.4E-19 252 338
Ophcf2|05305 PF00004 AAA ATPase family associated with various cellular activities (AAA) 7.4E-17 488 606
Ophcf2|05564 PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.5E-15 859 975
Ophcf2|05628 PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.9E-36 144 277
Ophcf2|05747 PF03215 Rad17 Rad17 P-loop domain 1.4E-07 40 99
PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 9.9E-09 60 210
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.8E-15 77 208
PF08542 Rep_fac_C Replication factor C C-terminal domain 3.5E-13 294 380
Ophcf2|05788 PF00004 AAA ATPase family associated with various cellular activities (AAA) 9.2E-39 350 491
PF17862 AAA_lid_3 AAA+ lid domain 5.8E-09 518 553
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.8E-09 632 744
Ophcf2|05976 PF08740 BCS1_N BCS1 N terminal 1.4E-13 21 82
PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.5E-20 120 242
Ophcf2|06435 PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.2E-04 752 861
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.7E-43 1013 1157
Ophcf2|06650 PF00533 BRCT BRCA1 C Terminus (BRCT) domain 2.9E-14 302 376
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.6E-08 494 591
PF08519 RFC1 Replication factor RFC1 C terminal domain 3.2E-55 772 924
Ophcf2|06652 PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 1.7E-10 19 185
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.3E-06 38 179
Ophcf2|06690 PF06068 TIP49 TIP49 P-loop domain 3.8E-154 20 362
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.4E-06 72 124
PF17856 TIP49_C TIP49 AAA-lid domain 2.2E-15 368 433
Ophcf2|06722 PF00004 AAA ATPase family associated with various cellular activities (AAA) 8.4E-13 222 351
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.6E-05 524 635
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.5E-45 525 654
Ophcf2|07136 PF09262 PEX-1N Peroxisome biogenesis factor 1, N-terminal 3.4E-26 123 214
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.2E-09 528 654
PF00004 AAA ATPase family associated with various cellular activities (AAA) 7.6E-43 860 986
PF17862 AAA_lid_3 AAA+ lid domain 4.4E-10 1018 1050
Ophcf2|07249 PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.3E-11 117 248
PF17871 AAA_lid_9 AAA lid domain 9.3E-36 255 357
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 1.6E-43 511 683
PF07728 AAA_5 AAA domain (dynein-related subfamily) 2.0E-08 516 634
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.3E-05 518 612
PF10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein 5.5E-22 694 769
Ophcf2|07264 PF13191 AAA_16 AAA ATPase domain 4.5E-10 128 224
PF13401 AAA_22 AAA domain 5.2E-11 153 282
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.4E-06 157 292
PF17872 AAA_lid_10 AAA lid domain 7.5E-06 337 380

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