© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|953 |
| Gene name | |
| Location | Contig_1255:2529..3704 |
| Strand | + |
| Gene length (bp) | 1175 |
| Transcript length (bp) | 1101 |
| Coding sequence length (bp) | 1101 |
| Protein length (aa) | 367 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08551 | DUF1751 | Eukaryotic integral membrane protein (DUF1751) | 5.4E-26 | 48 | 146 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q8LF05|RBL19_ARATH | Rhomboid-like protein 19 OS=Arabidopsis thaliana GN=RBL19 PE=2 SV=1 | 41 | 305 | 4.0E-24 |
| sp|Q12893|TM115_HUMAN | Transmembrane protein 115 OS=Homo sapiens GN=TMEM115 PE=1 SV=1 | 56 | 339 | 2.0E-21 |
| sp|A4FUB8|TM115_BOVIN | Transmembrane protein 115 OS=Bos taurus GN=TMEM115 PE=2 SV=1 | 56 | 339 | 5.0E-20 |
| sp|Q9WUH1|TM115_MOUSE | Transmembrane protein 115 OS=Mus musculus GN=Tmem115 PE=1 SV=1 | 56 | 327 | 2.0E-18 |
| sp|Q12239|TM115_YEAST | Transmembrane protein 115 homolog OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOL107W PE=1 SV=1 | 42 | 304 | 3.0E-18 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q8LF05|RBL19_ARATH | Rhomboid-like protein 19 OS=Arabidopsis thaliana GN=RBL19 PE=2 SV=1 | 41 | 305 | 4.0E-24 |
| sp|Q12893|TM115_HUMAN | Transmembrane protein 115 OS=Homo sapiens GN=TMEM115 PE=1 SV=1 | 56 | 339 | 2.0E-21 |
| sp|A4FUB8|TM115_BOVIN | Transmembrane protein 115 OS=Bos taurus GN=TMEM115 PE=2 SV=1 | 56 | 339 | 5.0E-20 |
| sp|Q9WUH1|TM115_MOUSE | Transmembrane protein 115 OS=Mus musculus GN=Tmem115 PE=1 SV=1 | 56 | 327 | 2.0E-18 |
| sp|Q12239|TM115_YEAST | Transmembrane protein 115 homolog OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOL107W PE=1 SV=1 | 42 | 304 | 3.0E-18 |
| sp|O42826|PDH1_SCHPO | Protein pdh1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pdh1 PE=3 SV=1 | 46 | 147 | 2.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006890 | retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| GO:0006810 | transport | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0008150 | biological_process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0048193 | Golgi vesicle transport | No |
| GO:0016192 | vesicle-mediated transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 26 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 10 | 28 | 18 |
| 2 | 40 | 59 | 19 |
| 3 | 63 | 85 | 22 |
| 4 | 97 | 119 | 22 |
| 5 | 134 | 156 | 22 |
| 6 | 168 | 190 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|953 MAPRLNIPPVTRSVLIVLVFQSLLAAAIRYRQWTKHAEIIIPYLTLVPQLSLIYPWTFITSTLVEGNIVTLSIAG VTLFHGGKYLERAWSSAELVKFLALVALLPNLMTFCVMMLFFALTRNESWALSVISGTVPVQISFLVAFSQLVPA HTVTLFRGIISLRVPRFPLVYIGTVALLSLTPLLSRAAFWLALFGFLTSWTYLRFYKTVFPDLDSSQPASLRGDA SDTFAFAEFFPAPMKPFVAALSDQVFEVLVAMRLCTPFSQAELSMARGDRLLSRGMPGGARAEAERRRAIALKAL DQRLNAATANAIHKAPSPVASPAQPSGPTIQVQPLPSTQTAMVSQPGHMLGETNLESEHEEEANKS* |
| Coding | >OphauG2|953 ATGGCTCCGCGACTCAATATTCCTCCAGTCACACGATCTGTCCTTATAGTTCTCGTCTTCCAGTCGCTCCTTGCC GCTGCCATTCGCTACCGGCAATGGACCAAGCATGCCGAAATCATCATACCATATCTGACACTGGTTCCGCAGCTT TCTCTCATCTATCCTTGGACCTTTATTACGTCGACACTGGTTGAGGGCAACATTGTCACCTTGTCCATCGCCGGG GTCACGCTCTTTCATGGTGGCAAGTACCTGGAACGCGCATGGTCTTCGGCCGAGCTGGTCAAGTTTTTGGCCCTT GTTGCGTTGCTGCCGAACCTAATGACGTTTTGCGTCATGATGTTGTTCTTTGCGCTGACGCGGAACGAGAGCTGG GCTCTTTCCGTCATCTCTGGCACTGTCCCAGTCCAGATTTCTTTTCTAGTCGCCTTTAGCCAACTCGTGCCCGCA CATACTGTCACCCTCTTCCGAGGTATCATATCGTTAAGAGTACCTCGATTTCCGCTCGTTTATATTGGGACCGTG GCTCTCCTGTCACTTACTCCATTACTATCGAGGGCCGCGTTTTGGCTGGCATTGTTTGGGTTCCTCACCAGCTGG ACATATCTTCGATTCTACAAGACGGTGTTTCCAGACCTTGATTCATCACAGCCTGCCTCTCTGCGGGGCGATGCA AGTGACACGTTTGCATTTGCTGAATTTTTCCCCGCGCCCATGAAACCATTCGTGGCTGCTTTATCAGACCAAGTC TTTGAGGTCCTGGTGGCAATGCGCCTCTGCACTCCCTTTTCGCAGGCTGAGTTATCCATGGCTCGTGGCGACAGG CTACTGTCGAGGGGCATGCCAGGCGGTGCTCGAGCAGAAGCAGAGCGGAGGAGAGCAATAGCTCTCAAGGCATTG GATCAAAGACTCAATGCCGCAACGGCAAATGCTATTCACAAGGCGCCGTCGCCAGTGGCGTCTCCCGCCCAACCG AGTGGACCTACTATCCAAGTACAGCCGTTGCCAAGCACACAAACAGCCATGGTATCTCAGCCCGGGCACATGCTG GGCGAAACCAACTTGGAATCCGAACACGAAGAAGAGGCAAACAAGAGCTGA |
| Transcript | >OphauG2|953 ATGGCTCCGCGACTCAATATTCCTCCAGTCACACGATCTGTCCTTATAGTTCTCGTCTTCCAGTCGCTCCTTGCC GCTGCCATTCGCTACCGGCAATGGACCAAGCATGCCGAAATCATCATACCATATCTGACACTGGTTCCGCAGCTT TCTCTCATCTATCCTTGGACCTTTATTACGTCGACACTGGTTGAGGGCAACATTGTCACCTTGTCCATCGCCGGG GTCACGCTCTTTCATGGTGGCAAGTACCTGGAACGCGCATGGTCTTCGGCCGAGCTGGTCAAGTTTTTGGCCCTT GTTGCGTTGCTGCCGAACCTAATGACGTTTTGCGTCATGATGTTGTTCTTTGCGCTGACGCGGAACGAGAGCTGG GCTCTTTCCGTCATCTCTGGCACTGTCCCAGTCCAGATTTCTTTTCTAGTCGCCTTTAGCCAACTCGTGCCCGCA CATACTGTCACCCTCTTCCGAGGTATCATATCGTTAAGAGTACCTCGATTTCCGCTCGTTTATATTGGGACCGTG GCTCTCCTGTCACTTACTCCATTACTATCGAGGGCCGCGTTTTGGCTGGCATTGTTTGGGTTCCTCACCAGCTGG ACATATCTTCGATTCTACAAGACGGTGTTTCCAGACCTTGATTCATCACAGCCTGCCTCTCTGCGGGGCGATGCA AGTGACACGTTTGCATTTGCTGAATTTTTCCCCGCGCCCATGAAACCATTCGTGGCTGCTTTATCAGACCAAGTC TTTGAGGTCCTGGTGGCAATGCGCCTCTGCACTCCCTTTTCGCAGGCTGAGTTATCCATGGCTCGTGGCGACAGG CTACTGTCGAGGGGCATGCCAGGCGGTGCTCGAGCAGAAGCAGAGCGGAGGAGAGCAATAGCTCTCAAGGCATTG GATCAAAGACTCAATGCCGCAACGGCAAATGCTATTCACAAGGCGCCGTCGCCAGTGGCGTCTCCCGCCCAACCG AGTGGACCTACTATCCAAGTACAGCCGTTGCCAAGCACACAAACAGCCATGGTATCTCAGCCCGGGCACATGCTG GGCGAAACCAACTTGGAATCCGAACACGAAGAAGAGGCAAACAAGAGCTGA |
| Gene | >OphauG2|953 ATGGCTCCGCGACTCAATATTCCTCCAGTCACACGATCTGTCCTTATAGTTCTCGTCTTCCAGTCGCTCCTTGCC GCTGCCATTCGCTACCGGCAATGGACCAAGCATGCCGAAATCATCATACCATATCTGACACTGGTTCCGCAGCTT TCTCTCATCTATCCTTGGACCTTTATTACGTCGACACTGGTTGAGGGCAACATTGTCACCTTGTCCATCGCCGGG GTCACGCTCTTTCATGGTGGCAAGTACCTGGAACGCGCATGGTCTTCGGCCGAGCTGGTCAAGTTTTTGGCCCTT GTTGCGTTGCTGCCGAACCTAATGACGTTTTGCGTCATGATGTTGTTCTTTGCGCTGACGCGGAACGAGAGCTGG GCGTACGTAAAAAGAAGTTTTTTCGTTATTGGTATTAGCAGTTGGAGGCCATTTGCTGACTGTGCGCACTGGGTA GTCTTTCCGTCATCTCTGGCACTGTCCCAGTCCAGATTTCTTTTCTAGTCGCCTTTAGCCAACTCGTGCCCGCAC ATACTGTCACCCTCTTCCGAGGTATCATATCGTTAAGAGTACCTCGATTTCCGCTCGTTTATATTGGGACCGTGG CTCTCCTGTCACTTACTCCATTACTATCGAGGGCCGCGTTTTGGCTGGCATTGTTTGGGTTCCTCACCAGCTGGA CATATCTTCGATTCTACAAGACGGTGTTTCCAGACCTTGATTCATCACAGCCTGCCTCTCTGCGGGGCGATGCAA GTGACACGTTTGCATTTGCTGAATTTTTCCCCGCGCCCATGAAACCATTCGTGGCTGCTTTATCAGACCAAGTCT TTGAGGTCCTGGTGGCAATGCGCCTCTGCACTCCCTTTTCGCAGGCTGAGTTATCCATGGCTCGTGGCGACAGGC TACTGTCGAGGGGCATGCCAGGCGGTGCTCGAGCAGAAGCAGAGCGGAGGAGAGCAATAGCTCTCAAGGCATTGG ATCAAAGACTCAATGCCGCAACGGCAAATGCTATTCACAAGGCGCCGTCGCCAGTGGCGTCTCCCGCCCAACCGA GTGGACCTACTATCCAAGTACAGCCGTTGCCAAGCACACAAACAGCCATGGTATCTCAGCCCGGGCACATGCTGG GCGAAACCAACTTGGAATCCGAACACGAAGAAGAGGCAAACAAGAGCTGA |