Fungal Genomics

at Utrecht University

General Properties

Protein ID	OphauG2\|936
Gene name
Location	Contig_125:7515..9247
Strand	-
Gene length (bp)	1732
Transcript length (bp)	741
Coding sequence length (bp)	741
Protein length (aa)	247

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00076	RRM_1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	1.4E-15	70	140

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q09330\|MLO3_SCHPO	mRNA export protein mlo3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mlo3 PE=1 SV=1	1	222	3.0E-31
sp\|Q12159\|YRA1_YEAST	RNA annealing protein YRA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YRA1 PE=1 SV=2	1	219	1.0E-17
sp\|Q9JJW6\|ALRF2_MOUSE	Aly/REF export factor 2 OS=Mus musculus GN=Alyref2 PE=1 SV=1	1	151	1.0E-07
sp\|Q8L773\|THO4A_ARATH	THO complex subunit 4A OS=Arabidopsis thaliana GN=ALY1 PE=1 SV=1	68	144	1.0E-07
sp\|Q58EA2\|THO4A_XENLA	THO complex subunit 4-A OS=Xenopus laevis GN=alyref-a PE=2 SV=1	69	152	2.0E-06

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q09330\|MLO3_SCHPO	mRNA export protein mlo3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mlo3 PE=1 SV=1	1	222	3.0E-31
sp\|Q12159\|YRA1_YEAST	RNA annealing protein YRA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YRA1 PE=1 SV=2	1	219	1.0E-17
sp\|Q9JJW6\|ALRF2_MOUSE	Aly/REF export factor 2 OS=Mus musculus GN=Alyref2 PE=1 SV=1	1	151	1.0E-07
sp\|Q8L773\|THO4A_ARATH	THO complex subunit 4A OS=Arabidopsis thaliana GN=ALY1 PE=1 SV=1	68	144	1.0E-07
sp\|Q58EA2\|THO4A_XENLA	THO complex subunit 4-A OS=Xenopus laevis GN=alyref-a PE=2 SV=1	69	152	2.0E-06
sp\|Q28FB9\|THOC4_XENTR	THO complex subunit 4 OS=Xenopus tropicalis GN=alyref PE=2 SV=1	69	152	2.0E-06
sp\|B5FXN8\|THOC4_TAEGU	THO complex subunit 4 OS=Taeniopygia guttata GN=ALYREF PE=2 SV=1	69	151	2.0E-06
sp\|Q94EH8\|THO4C_ARATH	THO complex subunit 4C OS=Arabidopsis thaliana GN=ALY3 PE=1 SV=1	68	150	2.0E-06
sp\|O08583\|THOC4_MOUSE	THO complex subunit 4 OS=Mus musculus GN=Alyref PE=1 SV=3	69	151	5.0E-06
sp\|Q86V81\|THOC4_HUMAN	THO complex subunit 4 OS=Homo sapiens GN=ALYREF PE=1 SV=3	69	151	6.0E-06
sp\|Q3T0I4\|THOC4_BOVIN	THO complex subunit 4 OS=Bos taurus GN=ALYREF PE=2 SV=1	69	151	7.0E-06
sp\|Q6NQ72\|THO4D_ARATH	THO complex subunit 4D OS=Arabidopsis thaliana GN=ALY4 PE=1 SV=1	68	146	9.0E-06
sp\|Q8L719\|THO4B_ARATH	THO complex subunit 4B OS=Arabidopsis thaliana GN=ALY2 PE=1 SV=1	1	144	9.0E-06

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GO

GO Term	Description	Terminal node
GO:0003723	RNA binding	Yes
GO:0003674	molecular_function	No
GO:1901363	heterocyclic compound binding	No
GO:0005488	binding	No
GO:0003676	nucleic acid binding	No
GO:0097159	organic cyclic compound binding	No

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 39	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>OphauG2\|936 MSGKLDRPLEDIVSAQRRSATHRRSQRRAAGRPATNAPVGGIQKANKASRAGALKATPAKTSPNNGESKIIVSNL PKDVLESQIKEYFVQSVGPIKRVDLVYGPNSVSRGIANVTFHKADGASKAFQKLNGLLVDNRPIKIEIVVGASQA DKVIPTVKSLAERTSQPKSQPKSAAGGKQHPASSKGTGNETGNRKRRGRSARPAKKTTEELDSEMADYFVSNPVV ENPNGGISAPNGDATMEDEIM*
Coding	>OphauG2\|936 ATGTCTGGAAAGCTCGACAGGCCTCTCGAAGACATCGTGTCGGCTCAGCGACGATCTGCTACACACCGCCGTTCT CAGAGACGTGCTGCCGGTCGCCCAGCCACAAATGCGCCCGTCGGGGGCATTCAAAAGGCCAACAAAGCCTCTCGG GCAGGCGCTCTCAAAGCGACTCCAGCCAAGACTTCACCCAACAATGGTGAAAGCAAAATCATTGTCAGCAATCTC CCCAAGGACGTCCTTGAATCACAAATCAAGGAGTACTTTGTCCAATCGGTCGGTCCCATCAAAAGAGTGGATCTT GTCTACGGCCCCAACTCTGTGAGCCGAGGCATAGCCAACGTCACCTTTCATAAGGCAGATGGGGCAAGCAAAGCT TTCCAGAAGCTGAACGGCTTGCTCGTCGATAATCGCCCGATCAAGATTGAAATTGTTGTCGGAGCTTCTCAAGCT GACAAGGTTATCCCAACTGTAAAGTCTTTGGCTGAACGGACCTCTCAGCCCAAGTCACAGCCCAAGTCGGCAGCT GGTGGCAAACAGCATCCTGCCTCGTCCAAAGGTACTGGCAATGAGACTGGCAATAGGAAGCGCCGTGGAAGAAGC GCCCGACCTGCCAAGAAGACGACTGAGGAACTTGATTCCGAGATGGCAGACTACTTTGTGTCCAACCCTGTTGTA GAGAACCCTAATGGCGGTATTTCTGCGCCCAATGGAGATGCCACGATGGAGGATGAGATCATGTAA
Transcript	>OphauG2\|936 ATGTCTGGAAAGCTCGACAGGCCTCTCGAAGACATCGTGTCGGCTCAGCGACGATCTGCTACACACCGCCGTTCT CAGAGACGTGCTGCCGGTCGCCCAGCCACAAATGCGCCCGTCGGGGGCATTCAAAAGGCCAACAAAGCCTCTCGG GCAGGCGCTCTCAAAGCGACTCCAGCCAAGACTTCACCCAACAATGGTGAAAGCAAAATCATTGTCAGCAATCTC CCCAAGGACGTCCTTGAATCACAAATCAAGGAGTACTTTGTCCAATCGGTCGGTCCCATCAAAAGAGTGGATCTT GTCTACGGCCCCAACTCTGTGAGCCGAGGCATAGCCAACGTCACCTTTCATAAGGCAGATGGGGCAAGCAAAGCT TTCCAGAAGCTGAACGGCTTGCTCGTCGATAATCGCCCGATCAAGATTGAAATTGTTGTCGGAGCTTCTCAAGCT GACAAGGTTATCCCAACTGTAAAGTCTTTGGCTGAACGGACCTCTCAGCCCAAGTCACAGCCCAAGTCGGCAGCT GGTGGCAAACAGCATCCTGCCTCGTCCAAAGGTACTGGCAATGAGACTGGCAATAGGAAGCGCCGTGGAAGAAGC GCCCGACCTGCCAAGAAGACGACTGAGGAACTTGATTCCGAGATGGCAGACTACTTTGTGTCCAACCCTGTTGTA GAGAACCCTAATGGCGGTATTTCTGCGCCCAATGGAGATGCCACGATGGAGGATGAGATCATGTAA
Gene	>OphauG2\|936 ATGTCTGGAAAGCTCGACAGGCCTCTCGAAGACATCGTGTCGGCTCAGCGACGATCTGCTACACACCGCCGTTCT CAGAGACGTGCTGCCGGTCGCCCAGCCACAAATGCGCCCGTCGGGGGCATTCAAAAGGCCAACAAAGCCTCTCGG GCAGGCGCTCTCAAAGCGACTCCAGCCAAGACTTCACCCAACAATGGTGAAAGCAAAATCATTGTCAGCAATCTC GTGAGTTCAACTTGCTGCTACATTCAGCACTCTTGTTTCTGAAACTAACCTGCTTGAAGCCCAAGGACGTCCTTG AATCACAAATCAAGGTATGTAGCCGTTGAGGCGCCATGCCTCCGGTCTTCGTTCGACTCGTCATCGTCGCATATT TTGCCTTGACTGGTCATCACGTCCTCGTTCCCGATTGCCTCTCAGAATGTGCCATGAGGATGCCCTTGTCTCCTT CCCGCAATCCAGCGAAGTGCCGGCACTATGGTGTGTCTGGGCCTGGAAGTTGAGAACAGCCTCCCCTGTTAATCA CTCCCTGATGTCTGGTCAGCATCTCCATGGGATAAACAAACAATTATGGGTGGCTGTGGCAGCACCGCAGCTCGG CTCCGTTTTTCAGCGGTTGACCAATTGCGATATTCTTATGCCGGCCAGGCGAGCAAAGCAGTGAGCAATCGGAGC AAGAACATAGCTTCCAAGCCATGGATGCATTGATATGGGTACTGCCATGTTTATTTTGGGAGAAGAACATTGGCA TTAGCTTAGTCGTGCGCCAGCAACTTAGCTGTATGGGGCTTGATGCTCTCGCTCGCTGGCCATCAGGGTCTCTCA TGACCTGCTGTATCAGAGCAGTCTTAGTGGCGATAGACTCGCTCATGGCATGCCGTCTAAGCTCGCTAAATACTG CTCTTTTGGCTCACTGCTCTGCTCGCTTGTGGACATCATTGTCGACGCATTGCCAAGCACTTTGTTTTTTTGCCT TTCGATGGTTCGGTCGCAATTCCGGAGACGACGTCGAACGAAGACTGGACTGGGTTCTCGTTTACAATGCGGCCC AATTCTTTCTATTTACTGACAACTTTGACCATGGTAGGAGTACTTTGTCCAATCGGTCGGTCCCATCAAAAGAGT GGATCTTGTCTACGGCCCCAACTCTGTGAGCCGAGGCATAGCCAACGTCACCTTTCATAAGGCAGATGGGGCAAG CAAAGCTTTCCAGAAGCTGAACGGCTTGCTCGTCGATAATCGCCCGATCAAGGTTTGATAATAACATTGAACTAG CCGATGTGCAGCAATTGACCTTGAACAGATTGAAATTGTTGTCGGAGCTTCTCAAGCTGACAAGGTTATCCCAAC TGTAAAGTCTTTGGCTGAACGGACCTCGTGAGTTATGATCTGCAAAGGTCACTTCGTTTCATTGGCTTACATACC TCTAGTCAGCCCAAGTCACAGCCCAAGTCGGCAGCTGGTGGCAAACAGCATCCTGCCTCGTCCAAAGGTACTGGC AATGAGACTGGCAATAGGAAGCGCCGTGGAAGAAGCGCCCGACCTGCCAAGAAGACGACTGAGGAACTTGATTCC GAGATGGCAGACTACTTTGTGTCCAACCCTGTTGTAGAGAACCCTAATGGCGGTATTTCTGCGCCCAATGGAGAT GCCACGATGGAGGATGAGATCATGGTTTGTTACCCATGATAGCAGTCCATGATTTCCGTCGCTAATGAGTTCCTT AAAGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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