© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|906 |
| Gene name | |
| Location | Contig_124:5797..7413 |
| Strand | - |
| Gene length (bp) | 1616 |
| Transcript length (bp) | 1500 |
| Coding sequence length (bp) | 1500 |
| Protein length (aa) | 500 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03849 | Tfb2 | Transcription factor Tfb2 | 1.4E-132 | 13 | 408 |
| PF18307 | Tfb2_C | Transcription factor Tfb2 (p52) C-terminal domain | 3.3E-20 | 428 | 493 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q75B51|TFB2_ASHGO | RNA polymerase II transcription factor B subunit 2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=TFB2 PE=3 SV=1 | 13 | 499 | 8.0E-112 |
| sp|Q6BGW8|TFB2_DEBHA | RNA polymerase II transcription factor B subunit 2 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=TFB2 PE=3 SV=2 | 1 | 497 | 1.0E-111 |
| sp|Q6CLR2|TFB2_KLULA | RNA polymerase II transcription factor B subunit 2 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=TFB2 PE=3 SV=1 | 13 | 491 | 2.0E-111 |
| sp|Q6BZX4|TFB2_YARLI | RNA polymerase II transcription factor B subunit 2 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=TFB2 PE=3 SV=1 | 13 | 497 | 5.0E-111 |
| sp|P87303|TFB2_SCHPO | RNA polymerase II transcription factor B subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tfb2 PE=1 SV=2 | 13 | 481 | 2.0E-107 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q75B51|TFB2_ASHGO | RNA polymerase II transcription factor B subunit 2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=TFB2 PE=3 SV=1 | 13 | 499 | 8.0E-112 |
| sp|Q6BGW8|TFB2_DEBHA | RNA polymerase II transcription factor B subunit 2 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=TFB2 PE=3 SV=2 | 1 | 497 | 1.0E-111 |
| sp|Q6CLR2|TFB2_KLULA | RNA polymerase II transcription factor B subunit 2 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=TFB2 PE=3 SV=1 | 13 | 491 | 2.0E-111 |
| sp|Q6BZX4|TFB2_YARLI | RNA polymerase II transcription factor B subunit 2 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=TFB2 PE=3 SV=1 | 13 | 497 | 5.0E-111 |
| sp|P87303|TFB2_SCHPO | RNA polymerase II transcription factor B subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tfb2 PE=1 SV=2 | 13 | 481 | 2.0E-107 |
| sp|Q6FP41|TFB2_CANGA | RNA polymerase II transcription factor B subunit 2 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=TFB2 PE=3 SV=1 | 5 | 499 | 3.0E-105 |
| sp|Q02939|TFB2_YEAST | RNA polymerase II transcription factor B subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TFB2 PE=1 SV=1 | 11 | 495 | 1.0E-102 |
| sp|O70422|TF2H4_MOUSE | General transcription factor IIH subunit 4 OS=Mus musculus GN=Gtf2h4 PE=1 SV=1 | 7 | 498 | 6.0E-87 |
| sp|P60027|TF2H4_PANTR | General transcription factor IIH subunit 4 OS=Pan troglodytes GN=GTF2H4 PE=3 SV=1 | 7 | 498 | 1.0E-86 |
| sp|Q92759|TF2H4_HUMAN | General transcription factor IIH subunit 4 OS=Homo sapiens GN=GTF2H4 PE=2 SV=1 | 7 | 498 | 1.0E-86 |
| sp|Q54C29|TF2H4_DICDI | General transcription factor IIH subunit 4 OS=Dictyostelium discoideum GN=gtf2h4 PE=3 SV=1 | 10 | 493 | 2.0E-58 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0001671 | ATPase activator activity | Yes |
| GO:0000439 | transcription factor TFIIH core complex | Yes |
| GO:0006289 | nucleotide-excision repair | Yes |
| GO:0006259 | DNA metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0140677 | molecular function activator activity | No |
| GO:0032991 | protein-containing complex | No |
| GO:0008152 | metabolic process | No |
| GO:0006950 | response to stress | No |
| GO:0006281 | DNA repair | No |
| GO:0008150 | biological_process | No |
| GO:0090575 | RNA polymerase II transcription regulator complex | No |
| GO:0044238 | primary metabolic process | No |
| GO:0140513 | nuclear protein-containing complex | No |
| GO:0033554 | cellular response to stress | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0050896 | response to stimulus | No |
| GO:0098772 | molecular function regulator activity | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0005667 | transcription regulator complex | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0051716 | cellular response to stimulus | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0006974 | cellular response to DNA damage stimulus | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|906 MAASSGRSLQLVEYLERLPGTTFRKLYQQPSTTFAIFRRMLPHLAKTIVMRLLFMRKPMLLSDLDLWIRPEAKRQ KDQVLSLLRGLHIIQISAPSKEKPQELYLTANFKTSLRLVITGGGSHNSFGVPSTLVVPPEIDVPFLDRYARRKW DDILHFVVSSVGYKMAGADSSAGPNKSVRELLIAGHLVDRRPSGAIGITQAGFTFLLQEANAQVWTLLLLWLEAA GESSTKGAAGLETVDMLSFLFLLASLELGRAYDTTALTEQRRNMLPSLMDFGLIYIPQHKRSMFFPTRLATTLTS GGSGSLRSISDGISAATAAANNPSAAQAGPLGGPADQKGTVIVETNYRIYAYTQSTLQIAVLALFSKLNMRFPDM VAGRLTRASIRQAISYGITADQIIAYLAAHAHDQMHRTAALASRPVLPPTVIDQIRLWQLENERMKTTSGFLFRD FDDHKEFIDTARFAEEVGVLVWRSEKSGMFFANKHEQIRDYLKSRKRAE* |
| Coding | >OphauG2|906 ATGGCCGCCTCATCGGGCCGTTCTCTCCAGCTGGTCGAGTACCTCGAGAGGCTGCCTGGCACCACCTTTCGCAAG CTCTATCAGCAGCCATCCACCACGTTTGCCATCTTTCGTCGCATGCTGCCGCATCTGGCAAAGACAATCGTCATG CGCCTCCTCTTCATGCGCAAGCCCATGCTCCTTAGCGACTTGGATCTCTGGATCAGACCAGAGGCAAAGCGCCAA AAAGACCAGGTCCTCTCGCTCCTCCGCGGCCTGCACATCATACAAATCTCGGCGCCGTCCAAAGAAAAGCCACAG GAGCTCTACTTGACGGCAAACTTCAAGACGTCCCTTCGCCTCGTCATTACCGGCGGCGGCAGTCACAACTCTTTC GGCGTCCCGTCAACACTGGTTGTTCCTCCCGAAATAGACGTTCCCTTTCTCGATCGCTATGCCCGCCGCAAGTGG GATGATATTTTACATTTTGTTGTTTCAAGCGTTGGCTACAAGATGGCCGGTGCCGATTCCTCTGCCGGCCCCAAC AAGAGTGTTCGCGAACTGCTCATCGCAGGCCATCTAGTTGATCGCCGGCCCAGCGGTGCCATTGGAATCACTCAA GCTGGATTTACCTTTTTGCTTCAAGAGGCCAATGCTCAGGTCTGGACCCTGCTCCTCCTCTGGCTCGAGGCTGCT GGCGAGAGCTCCACCAAGGGCGCGGCCGGGCTTGAGACTGTTGACATGCTTTCCTTTCTCTTTCTTCTGGCCAGC CTCGAACTAGGTCGTGCCTATGATACAACGGCCCTGACGGAGCAGCGACGCAACATGCTTCCCTCCCTCATGGAT TTCGGCCTTATTTACATTCCCCAACACAAACGCTCCATGTTTTTCCCCACGCGTTTGGCCACCACTCTTACCAGC GGCGGCAGTGGCAGCTTGCGGTCCATTAGCGATGGCATCTCAGCCGCCACCGCAGCCGCAAACAACCCCTCAGCC GCACAGGCCGGCCCCCTTGGTGGCCCTGCCGACCAAAAGGGCACCGTCATTGTCGAGACCAACTACCGCATCTAC GCTTACACGCAGTCTACCCTTCAGATTGCTGTGCTTGCCCTGTTCTCCAAGCTCAACATGCGCTTTCCAGACATG GTTGCTGGTCGCCTTACGCGCGCCTCTATCCGTCAGGCCATATCTTATGGCATCACGGCCGATCAAATCATTGCC TACCTGGCTGCACATGCCCACGACCAAATGCATCGTACTGCCGCTCTAGCTTCCCGCCCTGTCCTTCCCCCCACC GTCATTGACCAAATCCGCCTCTGGCAACTCGAGAATGAGCGCATGAAGACGACTAGCGGCTTCCTATTCCGCGAC TTTGATGACCACAAGGAGTTCATCGACACGGCTCGCTTTGCCGAAGAAGTCGGCGTCCTTGTTTGGCGCAGTGAG AAATCGGGCATGTTTTTTGCAAATAAGCACGAGCAGATACGCGACTACCTCAAGAGTCGAAAAAGAGCCGAGTAA |
| Transcript | >OphauG2|906 ATGGCCGCCTCATCGGGCCGTTCTCTCCAGCTGGTCGAGTACCTCGAGAGGCTGCCTGGCACCACCTTTCGCAAG CTCTATCAGCAGCCATCCACCACGTTTGCCATCTTTCGTCGCATGCTGCCGCATCTGGCAAAGACAATCGTCATG CGCCTCCTCTTCATGCGCAAGCCCATGCTCCTTAGCGACTTGGATCTCTGGATCAGACCAGAGGCAAAGCGCCAA AAAGACCAGGTCCTCTCGCTCCTCCGCGGCCTGCACATCATACAAATCTCGGCGCCGTCCAAAGAAAAGCCACAG GAGCTCTACTTGACGGCAAACTTCAAGACGTCCCTTCGCCTCGTCATTACCGGCGGCGGCAGTCACAACTCTTTC GGCGTCCCGTCAACACTGGTTGTTCCTCCCGAAATAGACGTTCCCTTTCTCGATCGCTATGCCCGCCGCAAGTGG GATGATATTTTACATTTTGTTGTTTCAAGCGTTGGCTACAAGATGGCCGGTGCCGATTCCTCTGCCGGCCCCAAC AAGAGTGTTCGCGAACTGCTCATCGCAGGCCATCTAGTTGATCGCCGGCCCAGCGGTGCCATTGGAATCACTCAA GCTGGATTTACCTTTTTGCTTCAAGAGGCCAATGCTCAGGTCTGGACCCTGCTCCTCCTCTGGCTCGAGGCTGCT GGCGAGAGCTCCACCAAGGGCGCGGCCGGGCTTGAGACTGTTGACATGCTTTCCTTTCTCTTTCTTCTGGCCAGC CTCGAACTAGGTCGTGCCTATGATACAACGGCCCTGACGGAGCAGCGACGCAACATGCTTCCCTCCCTCATGGAT TTCGGCCTTATTTACATTCCCCAACACAAACGCTCCATGTTTTTCCCCACGCGTTTGGCCACCACTCTTACCAGC GGCGGCAGTGGCAGCTTGCGGTCCATTAGCGATGGCATCTCAGCCGCCACCGCAGCCGCAAACAACCCCTCAGCC GCACAGGCCGGCCCCCTTGGTGGCCCTGCCGACCAAAAGGGCACCGTCATTGTCGAGACCAACTACCGCATCTAC GCTTACACGCAGTCTACCCTTCAGATTGCTGTGCTTGCCCTGTTCTCCAAGCTCAACATGCGCTTTCCAGACATG GTTGCTGGTCGCCTTACGCGCGCCTCTATCCGTCAGGCCATATCTTATGGCATCACGGCCGATCAAATCATTGCC TACCTGGCTGCACATGCCCACGACCAAATGCATCGTACTGCCGCTCTAGCTTCCCGCCCTGTCCTTCCCCCCACC GTCATTGACCAAATCCGCCTCTGGCAACTCGAGAATGAGCGCATGAAGACGACTAGCGGCTTCCTATTCCGCGAC TTTGATGACCACAAGGAGTTCATCGACACGGCTCGCTTTGCCGAAGAAGTCGGCGTCCTTGTTTGGCGCAGTGAG AAATCGGGCATGTTTTTTGCAAATAAGCACGAGCAGATACGCGACTACCTCAAGAGTCGAAAAAGAGCCGAGTAA |
| Gene | >OphauG2|906 ATGGCCGCCTCATCGGGCCGTTCTCTCCAGCTGGTCGAGTACCTCGAGAGGCTGCCTGGCACCACCTTTCGCAAG CTCTATCAGCAGCCATCCACCACGTTTGCCATCTTTCGTCGCATGCTGCCGCATCTGGGTGAGCACTGTTTTGGT GTGGTGTATTTCTTCTGCTCGGCTTCGGCATCTAACACGACGCTAGCAAAGACAATCGTCATGCGCCTCCTCTTC ATGCGCAAGCCCATGCTCCTTAGCGACTTGGATCTCTGGATCAGACCAGAGGCAAAGCGGTACTGTCAACACCAG CGTGTGGAGCTTGACACTGTTGCTCATGCGCTCACAGCCAAAAAGACCAGGTCCTCTCGCTCCTCCGCGGCCTGC ACATCATACAAATCTCGGCGCCGTCCAAAGAAAAGCCACAGGAGCTCTACTTGACGGCAAACTTCAAGACGTCCC TTCGCCTCGTCATTACCGGCGGCGGCAGTCACAACTCTTTCGGCGTCCCGTCAACACTGGTTGTTCCTCCCGAAA TAGACGTTCCCTTTCTCGATCGCTATGCCCGCCGCAAGTGGGATGATATTTTACATTTTGTTGTTTCAAGCGTTG GCTACAAGATGGCCGGTGCCGATTCCTCTGCCGGCCCCAACAAGAGTGTTCGCGAACTGCTCATCGCAGGCCATC TAGTTGATCGCCGGCCCAGCGGTGCCATTGGAATCACTCAAGCTGGATTTACCTTTTTGCTTCAAGAGGCCAATG CTCAGGTCTGGACCCTGCTCCTCCTCTGGCTCGAGGCTGCTGGCGAGAGCTCCACCAAGGGCGCGGCCGGGCTTG AGACTGTTGACATGCTTTCCTTTCTCTTTCTTCTGGCCAGCCTCGAACTAGGTCGTGCCTATGATACAACGGCCC TGACGGAGCAGCGACGCAACATGCTTCCCTCCCTCATGGATTTCGGCCTTATTTACATTCCCCAACACAAACGCT CCATGTTTTTCCCCACGCGTTTGGCCACCACTCTTACCAGCGGCGGCAGTGGCAGCTTGCGGTCCATTAGCGATG GCATCTCAGCCGCCACCGCAGCCGCAAACAACCCCTCAGCCGCACAGGCCGGCCCCCTTGGTGGCCCTGCCGACC AAAAGGGCACCGTCATTGTCGAGACCAACTACCGCATCTACGCTTACACGCAGTCTACCCTTCAGATTGCTGTGC TTGCCCTGTTCTCCAAGCTCAACATGCGCTTTCCAGACATGGTTGCTGGTCGCCTTACGCGCGCCTCTATCCGTC AGGCCATATCTTATGGCATCACGGCCGATCAAATCATTGCCTACCTGGCTGCACATGCCCACGACCAAATGCATC GTACTGCCGCTCTAGCTTCCCGCCCTGTCCTTCCCCCCACCGTCATTGACCAAATCCGCCTCTGGCAACTCGAGA ATGAGCGCATGAAGACGACTAGCGGCTTCCTATTCCGCGACTTTGATGACCACAAGGAGTTCATCGACACGGCTC GCTTTGCCGAAGAAGTCGGCGTCCTTGTTTGGCGCAGTGAGAAATCGGGCATGTTTTTTGCAAATAAGCACGAGC AGATACGCGACTACCTCAAGAGTCGAAAAAGAGCCGAGTAA |