© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|862 |
| Gene name | |
| Location | Contig_1224:3743..4561 |
| Strand | - |
| Gene length (bp) | 818 |
| Transcript length (bp) | 756 |
| Coding sequence length (bp) | 756 |
| Protein length (aa) | 252 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08657 | DASH_Spc34 | DASH complex subunit Spc34 | 3.6E-22 | 5 | 58 |
| PF08657 | DASH_Spc34 | DASH complex subunit Spc34 | 1.4E-22 | 72 | 233 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0042729 | DASH complex | Yes |
| GO:0008608 | attachment of spindle microtubules to kinetochore | Yes |
| GO:0005876 | spindle microtubule | Yes |
| GO:0032991 | protein-containing complex | No |
| GO:0022402 | cell cycle process | No |
| GO:0140513 | nuclear protein-containing complex | No |
| GO:0099081 | supramolecular polymer | No |
| GO:0008150 | biological_process | No |
| GO:0005575 | cellular_component | No |
| GO:0099512 | supramolecular fiber | No |
| GO:0099513 | polymeric cytoskeletal fiber | No |
| GO:0099080 | supramolecular complex | No |
| GO:0009987 | cellular process | No |
| GO:0005874 | microtubule | No |
| GO:0110165 | cellular anatomical entity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|862 MSLFDVHLEQIASSCQGIDALPFPPPAIFTNALLSNHDITTLIRDTEPHERALFSVPAPQPSEASAQPVSDSNGS SLRRQTVFNVASGEVTTSTSAASSAPCNPRRHTAVAAVLGGDMHEQLRPATTGRKTDPVDVEILLRGAEKLCGVY ELPGARERIASLRTRQKNAKSALAYYETKVAEQAEQLAKMNKDCKPHDHQEHQDSVQEYQVWTQDDLNQQEEESR ALEARKKELQSRLDAMKKDLDGLNSM* |
| Coding | >OphauG2|862 ATGTCTCTGTTTGACGTCCATCTCGAGCAGATTGCCTCGTCATGTCAGGGCATTGACGCTCTTCCATTCCCACCC CCCGCAATCTTCACCAATGCCCTCCTCTCCAACCACGACATCACCACCCTGATTCGCGACACCGAGCCTCATGAA CGAGCCCTGTTTTCCGTCCCCGCCCCTCAACCCTCGGAAGCCTCCGCCCAGCCCGTCAGCGATTCCAATGGCTCA TCGCTCCGTCGCCAAACCGTCTTCAATGTTGCGTCTGGCGAGGTGACGACGTCGACTTCTGCCGCCTCCTCTGCA CCGTGTAACCCCAGGCGCCACACCGCAGTCGCTGCCGTCCTGGGCGGCGACATGCACGAGCAACTGCGCCCTGCG ACTACCGGCCGCAAAACGGACCCAGTCGATGTCGAGATTCTGCTCCGCGGCGCCGAGAAGCTCTGTGGCGTCTAT GAGCTGCCTGGCGCCCGTGAGCGCATCGCCTCTCTCCGAACCAGACAAAAAAATGCCAAGAGTGCACTGGCTTAC TACGAGACAAAAGTTGCCGAGCAGGCCGAGCAGCTGGCCAAGATGAACAAGGACTGCAAGCCCCATGACCATCAA GAGCACCAAGATTCCGTCCAAGAATACCAAGTATGGACCCAAGACGACCTGAACCAACAGGAGGAAGAGTCTCGC GCCCTAGAAGCCCGCAAGAAGGAGTTGCAGTCACGACTAGATGCCATGAAGAAGGATCTCGATGGCCTCAACAGT ATGTGA |
| Transcript | >OphauG2|862 ATGTCTCTGTTTGACGTCCATCTCGAGCAGATTGCCTCGTCATGTCAGGGCATTGACGCTCTTCCATTCCCACCC CCCGCAATCTTCACCAATGCCCTCCTCTCCAACCACGACATCACCACCCTGATTCGCGACACCGAGCCTCATGAA CGAGCCCTGTTTTCCGTCCCCGCCCCTCAACCCTCGGAAGCCTCCGCCCAGCCCGTCAGCGATTCCAATGGCTCA TCGCTCCGTCGCCAAACCGTCTTCAATGTTGCGTCTGGCGAGGTGACGACGTCGACTTCTGCCGCCTCCTCTGCA CCGTGTAACCCCAGGCGCCACACCGCAGTCGCTGCCGTCCTGGGCGGCGACATGCACGAGCAACTGCGCCCTGCG ACTACCGGCCGCAAAACGGACCCAGTCGATGTCGAGATTCTGCTCCGCGGCGCCGAGAAGCTCTGTGGCGTCTAT GAGCTGCCTGGCGCCCGTGAGCGCATCGCCTCTCTCCGAACCAGACAAAAAAATGCCAAGAGTGCACTGGCTTAC TACGAGACAAAAGTTGCCGAGCAGGCCGAGCAGCTGGCCAAGATGAACAAGGACTGCAAGCCCCATGACCATCAA GAGCACCAAGATTCCGTCCAAGAATACCAAGTATGGACCCAAGACGACCTGAACCAACAGGAGGAAGAGTCTCGC GCCCTAGAAGCCCGCAAGAAGGAGTTGCAGTCACGACTAGATGCCATGAAGAAGGATCTCGATGGCCTCAACAGT ATGTGA |
| Gene | >OphauG2|862 ATGTCTCTGTTTGACGTCCATCTCGAGCAGATTGCCTCGTCATGTCAGGGCATTGACGCTCTTCCGTATGCGCAT ACACCTTGTCGTCCTGTCTGTCAACAGCCAGCCATTGACGCATTTGACGCAGATTCCCACCCCCCGCAATCTTCA CCAATGCCCTCCTCTCCAACCACGACATCACCACCCTGATTCGCGACACCGAGCCTCATGAACGAGCCCTGTTTT CCGTCCCCGCCCCTCAACCCTCGGAAGCCTCCGCCCAGCCCGTCAGCGATTCCAATGGCTCATCGCTCCGTCGCC AAACCGTCTTCAATGTTGCGTCTGGCGAGGTGACGACGTCGACTTCTGCCGCCTCCTCTGCACCGTGTAACCCCA GGCGCCACACCGCAGTCGCTGCCGTCCTGGGCGGCGACATGCACGAGCAACTGCGCCCTGCGACTACCGGCCGCA AAACGGACCCAGTCGATGTCGAGATTCTGCTCCGCGGCGCCGAGAAGCTCTGTGGCGTCTATGAGCTGCCTGGCG CCCGTGAGCGCATCGCCTCTCTCCGAACCAGACAAAAAAATGCCAAGAGTGCACTGGCTTACTACGAGACAAAAG TTGCCGAGCAGGCCGAGCAGCTGGCCAAGATGAACAAGGACTGCAAGCCCCATGACCATCAAGAGCACCAAGATT CCGTCCAAGAATACCAAGTATGGACCCAAGACGACCTGAACCAACAGGAGGAAGAGTCTCGCGCCCTAGAAGCCC GCAAGAAGGAGTTGCAGTCACGACTAGATGCCATGAAGAAGGATCTCGATGGCCTCAACAGTATGTGA |