© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|7995 |
| Gene name | |
| Location | Contig_999:3147..5789 |
| Strand | - |
| Gene length (bp) | 2642 |
| Transcript length (bp) | 2391 |
| Coding sequence length (bp) | 2391 |
| Protein length (aa) | 797 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q95SP2|HRD1_DROME | E3 ubiquitin-protein ligase HRD1 OS=Drosophila melanogaster GN=sip3 PE=1 SV=1 | 7 | 373 | 4.0E-48 |
| sp|Q5Z880|HRD1_ORYSJ | ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Oryza sativa subsp. japonica GN=HRD1 PE=2 SV=1 | 1 | 392 | 1.0E-44 |
| sp|Q5XHH7|SYVNB_XENLA | E3 ubiquitin-protein ligase synoviolin B OS=Xenopus laevis GN=syvn1-b PE=2 SV=1 | 8 | 376 | 3.0E-43 |
| sp|Q6NRL6|SYVNA_XENLA | E3 ubiquitin-protein ligase synoviolin A OS=Xenopus laevis GN=syvn1-a PE=2 SV=1 | 8 | 376 | 3.0E-43 |
| sp|Q86TM6|SYVN1_HUMAN | E3 ubiquitin-protein ligase synoviolin OS=Homo sapiens GN=SYVN1 PE=1 SV=2 | 8 | 376 | 5.0E-43 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q95SP2|HRD1_DROME | E3 ubiquitin-protein ligase HRD1 OS=Drosophila melanogaster GN=sip3 PE=1 SV=1 | 7 | 373 | 4.0E-48 |
| sp|Q5Z880|HRD1_ORYSJ | ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Oryza sativa subsp. japonica GN=HRD1 PE=2 SV=1 | 1 | 392 | 1.0E-44 |
| sp|Q5XHH7|SYVNB_XENLA | E3 ubiquitin-protein ligase synoviolin B OS=Xenopus laevis GN=syvn1-b PE=2 SV=1 | 8 | 376 | 3.0E-43 |
| sp|Q6NRL6|SYVNA_XENLA | E3 ubiquitin-protein ligase synoviolin A OS=Xenopus laevis GN=syvn1-a PE=2 SV=1 | 8 | 376 | 3.0E-43 |
| sp|Q86TM6|SYVN1_HUMAN | E3 ubiquitin-protein ligase synoviolin OS=Homo sapiens GN=SYVN1 PE=1 SV=2 | 8 | 376 | 5.0E-43 |
| sp|Q9DBY1|SYVN1_MOUSE | E3 ubiquitin-protein ligase synoviolin OS=Mus musculus GN=Syvn1 PE=1 SV=3 | 8 | 376 | 7.0E-42 |
| sp|Q803I8|SYVN1_DANRE | E3 ubiquitin-protein ligase synoviolin OS=Danio rerio GN=syvn1 PE=2 SV=2 | 1 | 384 | 6.0E-40 |
| sp|A8Y4B2|HRD1_CAEBR | E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis briggsae GN=sel-11 PE=3 SV=2 | 4 | 380 | 5.0E-33 |
| sp|Q20798|HRD1_CAEEL | E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis elegans GN=sel-11 PE=3 SV=1 | 4 | 380 | 3.0E-30 |
| sp|Q9LW77|HRD1A_ARATH | ERAD-associated E3 ubiquitin-protein ligase HRD1A OS=Arabidopsis thaliana GN=HRD1A PE=2 SV=1 | 1 | 199 | 2.0E-24 |
| sp|Q6NPT7|HRD1B_ARATH | ERAD-associated E3 ubiquitin-protein ligase HRD1B OS=Arabidopsis thaliana GN=HRD1B PE=2 SV=1 | 1 | 193 | 3.0E-24 |
| sp|O74757|HRD1_SCHPO | ERAD-associated E3 ubiquitin-protein ligase hrd1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hrd1 PE=1 SV=1 | 1 | 353 | 3.0E-23 |
| sp|Q9LW77|HRD1A_ARATH | ERAD-associated E3 ubiquitin-protein ligase HRD1A OS=Arabidopsis thaliana GN=HRD1A PE=2 SV=1 | 262 | 377 | 5.0E-21 |
| sp|Q6NPT7|HRD1B_ARATH | ERAD-associated E3 ubiquitin-protein ligase HRD1B OS=Arabidopsis thaliana GN=HRD1B PE=2 SV=1 | 262 | 376 | 1.0E-20 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 23 | 18 |
| 2 | 38 | 60 | 22 |
| 3 | 97 | 119 | 22 |
| 4 | 142 | 164 | 22 |
| 5 | 281 | 303 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|7995 MRLGWYAGVSTALAGGVVMSAFYQRANYYSAMVYLAQSNFCLLVLVNFSLLVYSSFIYALTRLCYGTLRAVEVEQ LTERAWFAITETCLAMTIFREEIGAWFLVMFTALITGKVWGWIGDGRVEFLEQQPPQNPRLFHIRLSLSLSLSFV YDVCILLYTINSVIQQARPNMMVMFLFEFAVLATCSWRTGVRYIIALVEQSIIKSQTKQRLLERRQEVRQRRQAM IRQRETRSAAGEHSTADQGPLPNEDDVDEMDIEVPGWAAKGELVLWLDLLTDMIKLGIYVAFFFMLLMFYGLPIH IMRDLFMTSRDFVKRLNALLRYRRAIQEMNRYPDATVDELAQENTCIICREDMRPWDPINDSGAIDRVCPTCRSP VTADRPGPTQFREAGVRVQIGGMPRLQGQQPPAINDNAPPAARDRPNAEAPQPPRNGGARVFNLGPIRLGFGANA QQFRDMAQQFGIPNMAVNPHATPALPETQPTLTDNLHNISNLVHQSEQIIQREAQRLQMAQQELQVAHLLMTEWQ RIYQRRLQPHETAQPGGSQVSAMVPNTINNALPAPLFPPAPAPIPGQLPTIAAIPMLHAAPQRTETPLVARLRPP DNAAAISAGSPDLPEGLTLPPGWSLMPLQRLDGVPTSSQPALRPATPLGSGVSNHVRPATDSAPGTSTGPTIGSG PRDEDQSLFESAGEAGVSNRSTEMASAAVPSEPHALSPTSLMPTWSGAAQLLNRARQAESSRASIPESSTSEQHN MHDATPTDEPFRDEMPTRAEDTAPCSSSKGKARAVTVEEARDDDDD* |
| Coding | >OphauG2|7995 ATGCGGCTGGGCTGGTATGCCGGGGTTTCCACAGCCCTTGCTGGCGGCGTCGTCATGTCTGCCTTTTACCAGCGA GCAAATTATTATTCGGCCATGGTTTATCTTGCCCAGAGCAACTTTTGCCTCTTGGTTCTCGTCAACTTTTCCCTC CTCGTCTATAGCAGCTTTATATACGCCCTAACCAGGCTCTGCTATGGCACCCTACGGGCCGTCGAAGTTGAGCAA CTCACGGAACGTGCTTGGTTCGCAATCACGGAAACGTGTTTAGCCATGACCATCTTCAGGGAGGAAATTGGCGCC TGGTTCCTCGTCATGTTCACAGCCCTTATCACGGGCAAAGTTTGGGGCTGGATCGGGGATGGCCGCGTCGAGTTT CTCGAACAGCAACCTCCGCAAAACCCGAGACTCTTTCACATACGCCTCAGCCTCTCCCTCTCCCTCAGCTTTGTC TACGATGTCTGCATCCTTCTCTACACTATCAACAGCGTCATCCAGCAAGCACGTCCCAATATGATGGTCATGTTT CTCTTCGAATTCGCTGTCCTCGCCACTTGTTCCTGGCGCACTGGTGTTCGCTACATTATAGCTCTTGTTGAGCAA AGCATCATCAAATCTCAGACCAAGCAGCGCCTGCTTGAACGGAGACAAGAGGTACGGCAACGTCGTCAGGCCATG ATTCGCCAACGAGAGACGCGCTCTGCCGCTGGAGAGCACTCGACGGCTGACCAAGGCCCTCTACCAAACGAGGAT GACGTTGACGAGATGGATATCGAGGTTCCCGGCTGGGCTGCCAAGGGCGAATTGGTTCTTTGGCTGGACCTCCTT ACAGACATGATTAAGCTCGGCATATATGTTGCATTTTTCTTCATGCTTCTCATGTTTTACGGCTTGCCAATACAC ATCATGCGGGACCTCTTCATGACTTCACGCGACTTTGTCAAGAGGCTCAATGCCTTGCTGCGTTATCGTCGGGCC ATCCAAGAAATGAACCGCTATCCAGATGCCACGGTTGACGAGCTCGCCCAAGAGAACACGTGCATTATTTGTCGC GAAGACATGAGACCCTGGGATCCCATTAACGACTCGGGCGCCATAGACCGAGTATGCCCGACTTGCCGGAGTCCC GTCACAGCAGATAGACCCGGTCCAACCCAATTTCGAGAAGCGGGCGTGAGAGTTCAGATTGGTGGCATGCCCAGA CTTCAAGGCCAGCAACCCCCTGCGATCAATGATAATGCACCCCCAGCTGCTCGTGACCGCCCCAACGCCGAAGCC CCCCAGCCTCCGAGGAATGGAGGCGCACGAGTCTTCAACTTGGGTCCTATCCGACTAGGCTTTGGTGCCAACGCT CAGCAATTTCGCGACATGGCTCAGCAGTTTGGAATTCCAAACATGGCCGTCAATCCACACGCGACCCCGGCCCTA CCTGAGACGCAGCCAACACTAACCGATAACCTTCATAACATCAGTAACCTTGTACATCAATCGGAGCAAATCATA CAGAGAGAAGCCCAACGTCTTCAAATGGCGCAACAGGAGCTGCAAGTGGCTCATCTCCTCATGACCGAGTGGCAG CGAATATACCAGCGTCGCCTACAGCCACACGAGACTGCTCAGCCTGGGGGCAGCCAGGTTTCTGCTATGGTGCCC AACACAATAAACAATGCTCTGCCCGCGCCCCTTTTTCCACCGGCTCCAGCTCCAATACCCGGTCAATTGCCGACA ATTGCCGCCATTCCAATGTTGCACGCTGCGCCGCAACGAACAGAAACTCCCTTGGTAGCCCGCCTGAGGCCACCA GACAATGCTGCTGCTATTTCTGCCGGTAGTCCGGACCTTCCAGAGGGCTTGACGTTACCTCCAGGCTGGTCTCTA ATGCCCCTTCAGAGACTGGACGGCGTACCGACTTCTAGCCAACCAGCACTGCGTCCAGCCACGCCACTCGGCTCG GGCGTGTCCAACCATGTTCGCCCAGCCACCGACTCGGCGCCTGGGACGTCAACAGGGCCAACCATTGGTAGTGGT CCGAGGGACGAGGACCAAAGTTTGTTTGAATCAGCAGGAGAGGCAGGGGTGTCGAATCGATCAACAGAGATGGCA TCCGCCGCTGTTCCATCTGAGCCTCATGCGCTGTCTCCAACTTCCCTCATGCCTACTTGGAGCGGCGCGGCTCAA TTGTTAAACCGTGCGAGGCAAGCCGAATCTTCTCGAGCATCCATACCAGAGAGCTCTACAAGTGAGCAACACAAT ATGCATGATGCTACACCAACAGACGAGCCTTTCCGGGACGAAATGCCGACACGAGCAGAGGATACGGCCCCGTGT TCCTCGTCAAAAGGCAAAGCAAGGGCTGTTACGGTTGAGGAAGCTAGGGATGATGATGATGACTAA |
| Transcript | >OphauG2|7995 ATGCGGCTGGGCTGGTATGCCGGGGTTTCCACAGCCCTTGCTGGCGGCGTCGTCATGTCTGCCTTTTACCAGCGA GCAAATTATTATTCGGCCATGGTTTATCTTGCCCAGAGCAACTTTTGCCTCTTGGTTCTCGTCAACTTTTCCCTC CTCGTCTATAGCAGCTTTATATACGCCCTAACCAGGCTCTGCTATGGCACCCTACGGGCCGTCGAAGTTGAGCAA CTCACGGAACGTGCTTGGTTCGCAATCACGGAAACGTGTTTAGCCATGACCATCTTCAGGGAGGAAATTGGCGCC TGGTTCCTCGTCATGTTCACAGCCCTTATCACGGGCAAAGTTTGGGGCTGGATCGGGGATGGCCGCGTCGAGTTT CTCGAACAGCAACCTCCGCAAAACCCGAGACTCTTTCACATACGCCTCAGCCTCTCCCTCTCCCTCAGCTTTGTC TACGATGTCTGCATCCTTCTCTACACTATCAACAGCGTCATCCAGCAAGCACGTCCCAATATGATGGTCATGTTT CTCTTCGAATTCGCTGTCCTCGCCACTTGTTCCTGGCGCACTGGTGTTCGCTACATTATAGCTCTTGTTGAGCAA AGCATCATCAAATCTCAGACCAAGCAGCGCCTGCTTGAACGGAGACAAGAGGTACGGCAACGTCGTCAGGCCATG ATTCGCCAACGAGAGACGCGCTCTGCCGCTGGAGAGCACTCGACGGCTGACCAAGGCCCTCTACCAAACGAGGAT GACGTTGACGAGATGGATATCGAGGTTCCCGGCTGGGCTGCCAAGGGCGAATTGGTTCTTTGGCTGGACCTCCTT ACAGACATGATTAAGCTCGGCATATATGTTGCATTTTTCTTCATGCTTCTCATGTTTTACGGCTTGCCAATACAC ATCATGCGGGACCTCTTCATGACTTCACGCGACTTTGTCAAGAGGCTCAATGCCTTGCTGCGTTATCGTCGGGCC ATCCAAGAAATGAACCGCTATCCAGATGCCACGGTTGACGAGCTCGCCCAAGAGAACACGTGCATTATTTGTCGC GAAGACATGAGACCCTGGGATCCCATTAACGACTCGGGCGCCATAGACCGAGTATGCCCGACTTGCCGGAGTCCC GTCACAGCAGATAGACCCGGTCCAACCCAATTTCGAGAAGCGGGCGTGAGAGTTCAGATTGGTGGCATGCCCAGA CTTCAAGGCCAGCAACCCCCTGCGATCAATGATAATGCACCCCCAGCTGCTCGTGACCGCCCCAACGCCGAAGCC CCCCAGCCTCCGAGGAATGGAGGCGCACGAGTCTTCAACTTGGGTCCTATCCGACTAGGCTTTGGTGCCAACGCT CAGCAATTTCGCGACATGGCTCAGCAGTTTGGAATTCCAAACATGGCCGTCAATCCACACGCGACCCCGGCCCTA CCTGAGACGCAGCCAACACTAACCGATAACCTTCATAACATCAGTAACCTTGTACATCAATCGGAGCAAATCATA CAGAGAGAAGCCCAACGTCTTCAAATGGCGCAACAGGAGCTGCAAGTGGCTCATCTCCTCATGACCGAGTGGCAG CGAATATACCAGCGTCGCCTACAGCCACACGAGACTGCTCAGCCTGGGGGCAGCCAGGTTTCTGCTATGGTGCCC AACACAATAAACAATGCTCTGCCCGCGCCCCTTTTTCCACCGGCTCCAGCTCCAATACCCGGTCAATTGCCGACA ATTGCCGCCATTCCAATGTTGCACGCTGCGCCGCAACGAACAGAAACTCCCTTGGTAGCCCGCCTGAGGCCACCA GACAATGCTGCTGCTATTTCTGCCGGTAGTCCGGACCTTCCAGAGGGCTTGACGTTACCTCCAGGCTGGTCTCTA ATGCCCCTTCAGAGACTGGACGGCGTACCGACTTCTAGCCAACCAGCACTGCGTCCAGCCACGCCACTCGGCTCG GGCGTGTCCAACCATGTTCGCCCAGCCACCGACTCGGCGCCTGGGACGTCAACAGGGCCAACCATTGGTAGTGGT CCGAGGGACGAGGACCAAAGTTTGTTTGAATCAGCAGGAGAGGCAGGGGTGTCGAATCGATCAACAGAGATGGCA TCCGCCGCTGTTCCATCTGAGCCTCATGCGCTGTCTCCAACTTCCCTCATGCCTACTTGGAGCGGCGCGGCTCAA TTGTTAAACCGTGCGAGGCAAGCCGAATCTTCTCGAGCATCCATACCAGAGAGCTCTACAAGTGAGCAACACAAT ATGCATGATGCTACACCAACAGACGAGCCTTTCCGGGACGAAATGCCGACACGAGCAGAGGATACGGCCCCGTGT TCCTCGTCAAAAGGCAAAGCAAGGGCTGTTACGGTTGAGGAAGCTAGGGATGATGATGATGACTAA |
| Gene | >OphauG2|7995 ATGCGGCTGGGCTGGTATGCCGGGGTGCGCATCTTGATACTCGCCACTTCACGCCTCAATAGAAAGCCCTATTGA CTTTCGACTGACCTTTGACAGGTTTCCACAGCCCTTGCTGGCGGCGTCGTCATGTCTGCCTTTTACCAGCGAGCA AATTATTATTCGGCCATGGTTTATCTTGCCCAGAGCAACTTTTGCCTCTTGGTAAGCTCTCCGAGTCTCACTTGT CGACCTTCACCGCTCATGGTTTAGGTTCTCGTCAACTTTTCCCTCCTCGTCTATAGCAGCTTTATATACGCCCTA ACCAGGCTCTGCTATGGCACCCTACGGGCCGTCGAAGTTGAGCAACTCACGGAACGTGCTTGGTTCGCAATCACG GAAACGTGTTTAGCCATGACCATCTTCAGGGAGGAAATTGGCGCCTGGTTCCTCGTCATGTTCACAGCCCTTATC ACGGGCAAAGTTTGGGGCTGGATCGGGGATGGCCGCGTCGAGTTTCTCGAACAGCAACCTCCGCAAAACCCGAGA CTCTTTCACATACGCCTCAGCCTCTCCCTCTCCCTCAGCTTTGTCTACGATGTCTGCATCCTTCTCTACACTATC AACAGCGTCATCCAGCAAGCACGTCCCAATATGATGGTCATGTTTCTCTTCGAATTCGCTGTCCTCGCCACTTGT TCCTGGCGCACTGGTGTTCGCTACATTATAGCTCTTGTTGAGCAAAGCATCATCAAATCTCAGACCAAGCAGCGC CTGCTTGAACGGAGACAAGAGGTACGGCAACGTCGTCAGGCCATGATTCGCCAACGAGAGACGCGCTCTGCCGCT GGAGAGCACTCGACGGCTGACCAAGGCCCTCTACCAAACGAGGATGACGTTGACGAGATGGATATCGAGGTTCCC GGCTGGGCTGCCAAGGGCGAATTGGTTCTTTGGCTGGACCTCCTTACAGGTATCTCGCCCTCTATTACATTTACA CATGTGTGTTCATCTGCTGACCCAATCAAGACATGATTAAGCTCGGCATATATGTTGCATTTTTCTTCATGCTTC TCATGTTTTACGGCTTGCCAATACACATCATGCGGGACCTCTTCATGACTTCACGCGACTTTGTCAAGAGGCTCA ATGCCTTGCTGCGTTATCGTCGGGCCATCCAAGAAATGAACCGCTATCCAGATGCCACGGTTGACGAGCTCGCCC AAGAGAACACGTGCATTATTTGTCGCGAAGACATGAGACCCTGGGATCCCATTAACGACTCGGGCGCCATAGACC GAGTACGTCCAAAGAAGCTGCCTTGCGGTCACATACTGCACCTAGGTTGTCTCAAAAGCTGGCTGGAACGGCAGC AGGTATGCCCGACTTGCCGGAGTCCCGTCACAGCAGATAGACCCGGTCCAACCCAATTTCGAGAAGCGGGCGTGA GAGTTCAGATTGGTGGCATGCCCAGACTTCAAGGCCAGCAACCCCCTGCGATCAATGATAATGCACCCCCAGCTG CTCGTGACCGCCCCAACGCCGAAGCCCCCCAGCCTCCGAGGAATGGAGGCGCACGAGTCTTCAACTTGGGTCCTA TCCGACTAGGCTTTGGTGCCAACGCTCAGCAATTTCGCGACATGGCTCAGCAGTTTGGAATTCCAAACATGGCCG TCAATCCACACGCGACCCCGGCCCTACCTGAGACGCAGCCAACACTAACCGATAACCTTCATAACATCAGTAACC TTGTACATCAATCGGAGCAAATCATACAGAGAGAAGCCCAACGTCTTCAAATGGCGCAACAGGAGCTGCAAGTGG CTCATCTCCTCATGACCGAGTGGCAGCGAATATACCAGCGTCGCCTACAGCCACACGAGACTGCTCAGCCTGGGG GCAGCCAGGTTTCTGCTATGGTGCCCAACACAATAAACAATGCTCTGCCCGCGCCCCTTTTTCCACCGGCTCCAG CTCCAATACCCGGTCAATTGCCGACAATTGCCGCCATTCCAATGTTGCACGCTGCGCCGCAACGAACAGAAACTC CCTTGGTAGCCCGCCTGAGGCCACCAGACAATGCTGCTGCTATTTCTGCCGGTAGTCCGGACCTTCCAGAGGGCT TGACGTTACCTCCAGGCTGGTCTCTAATGCCCCTTCAGAGACTGGACGGCGTACCGACTTCTAGCCAACCAGCAC TGCGTCCAGCCACGCCACTCGGCTCGGGCGTGTCCAACCATGTTCGCCCAGCCACCGACTCGGCGCCTGGGACGT CAACAGGGCCAACCATTGGTAGTGGTCCGAGGGACGAGGACCAAAGTTTGTTTGAATCAGCAGGAGAGGCAGGGG TGTCGAATCGATCAACAGAGATGGCATCCGCCGCTGTTCCATCTGAGCCTCATGCGCTGTCTCCAACTTCCCTCA TGCCTACTTGGAGCGGCGCGGCTCAATTGTTAAACCGTGCGAGGCAAGCCGAATCTTCTCGAGCATCCATACCAG AGAGCTCTACAAGTGAGCAACACAATATGCATGATGCTACACCAACAGACGAGCCTTTCCGGGACGAAATGCCGA CACGAGCAGAGGATACGGCCCCGTGTTCCTCGTCAAAAGGCAAAGCAAGGGCTGTTACGGTTGAGGAAGCTAGGG ATGATGATGATGACTAA |