© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|7958 |
| Gene name | |
| Location | Contig_988:3310..4479 |
| Strand | - |
| Gene length (bp) | 1169 |
| Transcript length (bp) | 1032 |
| Coding sequence length (bp) | 1032 |
| Protein length (aa) | 344 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05739 | SNARE | SNARE domain | 2.1E-14 | 280 | 332 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P6P1|TLG2_SCHPO | t-SNARE affecting a late Golgi compartment protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tlg2 PE=3 SV=1 | 2 | 336 | 7.0E-60 |
| sp|Q08144|TLG2_YEAST | T-SNARE affecting a late Golgi compartment protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TLG2 PE=1 SV=1 | 1 | 337 | 6.0E-46 |
| sp|Q9SUJ1|SYP43_ARATH | Syntaxin-43 OS=Arabidopsis thaliana GN=SYP43 PE=2 SV=2 | 46 | 336 | 4.0E-30 |
| sp|Q8BVI5|STX16_MOUSE | Syntaxin-16 OS=Mus musculus GN=Stx16 PE=1 SV=3 | 39 | 315 | 2.0E-29 |
| sp|O65359|SYP41_ARATH | Syntaxin-41 OS=Arabidopsis thaliana GN=SYP41 PE=1 SV=1 | 46 | 336 | 5.0E-29 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P6P1|TLG2_SCHPO | t-SNARE affecting a late Golgi compartment protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tlg2 PE=3 SV=1 | 2 | 336 | 7.0E-60 |
| sp|Q08144|TLG2_YEAST | T-SNARE affecting a late Golgi compartment protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TLG2 PE=1 SV=1 | 1 | 337 | 6.0E-46 |
| sp|Q9SUJ1|SYP43_ARATH | Syntaxin-43 OS=Arabidopsis thaliana GN=SYP43 PE=2 SV=2 | 46 | 336 | 4.0E-30 |
| sp|Q8BVI5|STX16_MOUSE | Syntaxin-16 OS=Mus musculus GN=Stx16 PE=1 SV=3 | 39 | 315 | 2.0E-29 |
| sp|O65359|SYP41_ARATH | Syntaxin-41 OS=Arabidopsis thaliana GN=SYP41 PE=1 SV=1 | 46 | 336 | 5.0E-29 |
| sp|O14662|STX16_HUMAN | Syntaxin-16 OS=Homo sapiens GN=STX16 PE=1 SV=3 | 39 | 315 | 7.0E-29 |
| sp|Q9SWH4|SYP42_ARATH | Syntaxin-42 OS=Arabidopsis thaliana GN=SYP42 PE=1 SV=1 | 64 | 336 | 9.0E-25 |
| sp|O94651|PEP12_SCHPO | Syntaxin pep12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pep12 PE=1 SV=2 | 247 | 335 | 2.0E-12 |
| sp|O70439|STX7_MOUSE | Syntaxin-7 OS=Mus musculus GN=Stx7 PE=1 SV=3 | 228 | 335 | 7.0E-11 |
| sp|O16000|STX1A_CAEEL | Syntaxin-1A homolog OS=Caenorhabditis elegans GN=unc-64 PE=1 SV=1 | 245 | 338 | 1.0E-09 |
| sp|P61268|STX1B_SHEEP | Syntaxin-1B OS=Ovis aries GN=STX1B PE=2 SV=1 | 75 | 331 | 6.0E-09 |
| sp|P61267|STX1B_BOVIN | Syntaxin-1B OS=Bos taurus GN=STX1B PE=1 SV=1 | 75 | 331 | 6.0E-09 |
| sp|P61265|STX1B_RAT | Syntaxin-1B OS=Rattus norvegicus GN=Stx1b PE=1 SV=1 | 75 | 331 | 6.0E-09 |
| sp|P61264|STX1B_MOUSE | Syntaxin-1B OS=Mus musculus GN=Stx1b PE=1 SV=1 | 75 | 331 | 6.0E-09 |
| sp|P61266|STX1B_HUMAN | Syntaxin-1B OS=Homo sapiens GN=STX1B PE=1 SV=1 | 75 | 331 | 6.0E-09 |
| sp|Q5R4L2|STX1A_PONAB | Syntaxin-1A OS=Pongo abelii GN=STX1A PE=2 SV=1 | 245 | 331 | 8.0E-09 |
| sp|P32851|STX1A_RAT | Syntaxin-1A OS=Rattus norvegicus GN=Stx1a PE=1 SV=1 | 245 | 331 | 1.0E-08 |
| sp|Q16623|STX1A_HUMAN | Syntaxin-1A OS=Homo sapiens GN=STX1A PE=1 SV=1 | 245 | 331 | 1.0E-08 |
| sp|O35526|STX1A_MOUSE | Syntaxin-1A OS=Mus musculus GN=Stx1a PE=1 SV=3 | 245 | 331 | 1.0E-08 |
| sp|Q24547|STX1A_DROME | Syntaxin-1A OS=Drosophila melanogaster GN=Syx1A PE=1 SV=1 | 245 | 330 | 1.0E-08 |
| sp|P32854|PEP12_YEAST | Syntaxin PEP12 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PEP12 PE=1 SV=2 | 45 | 336 | 1.0E-08 |
| sp|Q16932|STX_APLCA | Syntaxin OS=Aplysia californica PE=2 SV=1 | 73 | 324 | 2.0E-08 |
| sp|P32850|STX1A_BOVIN | Syntaxin-1A OS=Bos taurus GN=STX1A PE=1 SV=1 | 245 | 331 | 2.0E-08 |
| sp|Q54JY7|STX7A_DICDI | Syntaxin-7A OS=Dictyostelium discoideum GN=syn7A PE=1 SV=1 | 212 | 339 | 3.0E-08 |
| sp|Q86Y82|STX12_HUMAN | Syntaxin-12 OS=Homo sapiens GN=STX12 PE=1 SV=1 | 247 | 323 | 2.0E-07 |
| sp|Q3ZBT5|STX7_BOVIN | Syntaxin-7 OS=Bos taurus GN=STX7 PE=2 SV=1 | 228 | 315 | 3.0E-07 |
| sp|O70257|STX7_RAT | Syntaxin-7 OS=Rattus norvegicus GN=Stx7 PE=1 SV=4 | 247 | 315 | 7.0E-07 |
| sp|Q5R602|STX7_PONAB | Syntaxin-7 OS=Pongo abelii GN=STX7 PE=2 SV=3 | 247 | 315 | 9.0E-07 |
| sp|O15400|STX7_HUMAN | Syntaxin-7 OS=Homo sapiens GN=STX7 PE=1 SV=4 | 247 | 315 | 9.0E-07 |
| sp|Q5RBW6|STX12_PONAB | Syntaxin-12 OS=Pongo abelii GN=STX12 PE=2 SV=1 | 129 | 324 | 1.0E-06 |
| sp|G3V7P1|STX12_RAT | Syntaxin-12 OS=Rattus norvegicus GN=Stx12 PE=1 SV=1 | 247 | 316 | 6.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 18 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 318 | 335 | 17 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|7958 MWRDRTNLYISYRQSYAHHPRQRAKPVRLQGLSTRDAPEDRRGLLSSDPFDDDNGDAVIEMDLLPPRWADVSDDV AQLLSAITARSQRLDKLHQQHVLPGFDDEDATKKAEEAQIESLTQEITRAFHDCHGCIQRIEQLVRQAKHSGSLS RAQEIMAKNLQISLATKVQDVSASFRKKQSAYLKKLRDMGGLASPTVLDWSSAPYAASASADTHQSLQESDADRL FCQTTLQAASQQRSLHSNDAAIAQREHEIQDIAQGIIELSDLFRDLQAMVIDQGTMLDRIDYNVERMNQDVKGAD QELNVASGYQRKTTKRKIILLLLILIAGLFILLIVKPKKKGTS* |
| Coding | >OphauG2|7958 ATGTGGCGAGACCGCACTAACCTCTACATCTCATACCGCCAGTCGTACGCCCATCATCCACGACAGCGTGCCAAG CCGGTACGACTGCAAGGCTTGAGCACCCGAGATGCGCCAGAGGACCGCCGCGGCCTGCTGTCATCAGACCCCTTT GACGACGACAATGGCGACGCCGTCATCGAGATGGACCTGCTTCCTCCGCGCTGGGCTGATGTGTCGGATGATGTT GCACAGCTTCTTTCTGCCATTACTGCCAGGAGCCAGCGCCTAGACAAATTGCACCAGCAACACGTTTTGCCAGGC TTCGATGACGAGGACGCCACTAAAAAAGCAGAGGAGGCCCAGATTGAGAGCCTTACACAGGAAATCACAAGGGCC TTTCATGACTGTCATGGTTGTATCCAGCGCATCGAGCAACTTGTCCGTCAAGCGAAGCACTCTGGTTCTCTTAGC CGTGCTCAAGAAATAATGGCCAAAAATCTGCAGATATCTTTGGCCACCAAAGTTCAAGACGTAAGCGCAAGCTTT CGCAAAAAACAAAGCGCCTACCTCAAGAAGCTACGCGACATGGGCGGCCTTGCATCCCCTACCGTACTTGATTGG TCGTCAGCACCCTATGCCGCCTCGGCTTCTGCCGATACGCACCAGTCACTGCAAGAATCAGATGCCGACCGATTA TTTTGCCAGACGACTCTGCAAGCAGCATCTCAACAAAGGTCGCTTCATTCCAACGATGCCGCAATAGCGCAGCGG GAGCATGAGATTCAAGATATCGCCCAAGGCATCATTGAGCTATCTGATCTCTTTCGAGATCTGCAAGCCATGGTT ATAGATCAAGGCACTATGCTCGACAGAATCGACTACAACGTTGAGCGTATGAATCAGGACGTCAAGGGTGCGGAT CAAGAGCTCAATGTGGCATCTGGCTATCAGAGAAAGACGACGAAAAGGAAAATCATACTCTTGCTCTTGATCCTC ATAGCTGGCCTCTTTATTCTTCTTATAGTCAAACCCAAGAAAAAGGGCACCTCATGA |
| Transcript | >OphauG2|7958 ATGTGGCGAGACCGCACTAACCTCTACATCTCATACCGCCAGTCGTACGCCCATCATCCACGACAGCGTGCCAAG CCGGTACGACTGCAAGGCTTGAGCACCCGAGATGCGCCAGAGGACCGCCGCGGCCTGCTGTCATCAGACCCCTTT GACGACGACAATGGCGACGCCGTCATCGAGATGGACCTGCTTCCTCCGCGCTGGGCTGATGTGTCGGATGATGTT GCACAGCTTCTTTCTGCCATTACTGCCAGGAGCCAGCGCCTAGACAAATTGCACCAGCAACACGTTTTGCCAGGC TTCGATGACGAGGACGCCACTAAAAAAGCAGAGGAGGCCCAGATTGAGAGCCTTACACAGGAAATCACAAGGGCC TTTCATGACTGTCATGGTTGTATCCAGCGCATCGAGCAACTTGTCCGTCAAGCGAAGCACTCTGGTTCTCTTAGC CGTGCTCAAGAAATAATGGCCAAAAATCTGCAGATATCTTTGGCCACCAAAGTTCAAGACGTAAGCGCAAGCTTT CGCAAAAAACAAAGCGCCTACCTCAAGAAGCTACGCGACATGGGCGGCCTTGCATCCCCTACCGTACTTGATTGG TCGTCAGCACCCTATGCCGCCTCGGCTTCTGCCGATACGCACCAGTCACTGCAAGAATCAGATGCCGACCGATTA TTTTGCCAGACGACTCTGCAAGCAGCATCTCAACAAAGGTCGCTTCATTCCAACGATGCCGCAATAGCGCAGCGG GAGCATGAGATTCAAGATATCGCCCAAGGCATCATTGAGCTATCTGATCTCTTTCGAGATCTGCAAGCCATGGTT ATAGATCAAGGCACTATGCTCGACAGAATCGACTACAACGTTGAGCGTATGAATCAGGACGTCAAGGGTGCGGAT CAAGAGCTCAATGTGGCATCTGGCTATCAGAGAAAGACGACGAAAAGGAAAATCATACTCTTGCTCTTGATCCTC ATAGCTGGCCTCTTTATTCTTCTTATAGTCAAACCCAAGAAAAAGGGCACCTCATGA |
| Gene | >OphauG2|7958 ATGTGGCGAGACCGCACTAACCTGTCGGTTTGCCCCCTGTGTTCTATTCTGGCCTCTATGTTGACGACTGACTTG AGCCTTGTCTGTCGCAGCTACATCTCATACCGCCAGTCGTACGCCCATCATCCACGACAGCGTGCCAAGCCGGTA CGACTGCAAGGCTTGAGCACCCGAGATGCGCCAGAGGACCGCCGCGGCCTGCTGTCATCAGACCCCTTTGACGAC GACAATGGCGACGCCGTCATCGAGATGGACCTGCTTCCTCCGCGCTGGGCTGATGTGTCGGATGATGTTGCACAG CTTCTTTCTGCCATTACTGCCAGGAGCCAGCGCCTAGACAAATTGCACCAGCAACACGTTTTGCCAGGCTTCGAT GACGAGGACGCCACTAAAAAAGCAGAGGAGGCCCAGATTGAGAGCCTTACACAGGAAATCACAAGGGCCTTTCAT GACTGTCATGGTTGTATCCAGCGCATCGAGCAACTTGTCCGTCAAGCGAAGCACTCTGGTTCTCTTAGCCGTGCT CAAGAAATAATGGCCAAAAATCTGCAGATATCTTTGGCCACCAAAGTTCAAGACGTAAGCGCAAGCTTTCGCAAA AAACAAAGCGCCTACCTCAAGAGTACGCCTTGTAGTGCTCTTATTGGCCATCTTGCAACAACTAGCTAACTCTTT GCACTCGCCACTCAGAGCTACGCGACATGGGCGGCCTTGCATCCCCTACCGTACTTGATTGGTCGTCAGCACCCT ATGCCGCCTCGGCTTCTGCCGATACGCACCAGTCACTGCAAGAATCAGATGCCGACCGATTATTTTGCCAGACGA CTCTGCAAGCAGCATCTCAACAAAGGTCGCTTCATTCCAACGATGCCGCAATAGCGCAGCGGGAGCATGAGATTC AAGATATCGCCCAAGGCATCATTGAGCTATCTGATCTCTTTCGAGATCTGCAAGCCATGGTTATAGATCAAGGCA CTATGCTCGACAGAATCGACTACAACGTTGAGCGTATGAATCAGGACGTCAAGGGTGCGGATCAAGAGCTCAATG TGGCATCTGGCTATCAGAGAAAGACGACGAAAAGGAAAATCATACTCTTGCTCTTGATCCTCATAGCTGGCCTCT TTATTCTTCTTATAGTCAAACCCAAGAAAAAGGGCACCTCATGA |