© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|7954 |
| Gene name | |
| Location | Contig_987:252..1525 |
| Strand | + |
| Gene length (bp) | 1273 |
| Transcript length (bp) | 1206 |
| Coding sequence length (bp) | 1206 |
| Protein length (aa) | 402 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04882 | Peroxin-3 | Peroxin-3 | 6.5E-112 | 4 | 341 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q874C0|PEX3_YARLI | Peroxisomal biogenesis factor 3 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=PEX3 PE=3 SV=1 | 40 | 343 | 3.0E-48 |
| sp|Q01497|PEX3_PICAN | Peroxisomal biogenesis factor 3 OS=Pichia angusta GN=PEX3 PE=3 SV=1 | 41 | 341 | 2.0E-28 |
| sp|Q92262|PEX3_PICPA | Peroxisomal biogenesis factor 3 OS=Komagataella pastoris GN=PEX3 PE=1 SV=1 | 38 | 341 | 3.0E-23 |
| sp|Q6BK00|PEX3_DEBHA | Peroxisomal biogenesis factor 3 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=PEX3 PE=3 SV=1 | 48 | 344 | 6.0E-21 |
| sp|P28795|PEX3_YEAST | Peroxisomal biogenesis factor 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PEX3 PE=1 SV=1 | 47 | 341 | 2.0E-19 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q874C0|PEX3_YARLI | Peroxisomal biogenesis factor 3 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=PEX3 PE=3 SV=1 | 40 | 343 | 3.0E-48 |
| sp|Q01497|PEX3_PICAN | Peroxisomal biogenesis factor 3 OS=Pichia angusta GN=PEX3 PE=3 SV=1 | 41 | 341 | 2.0E-28 |
| sp|Q92262|PEX3_PICPA | Peroxisomal biogenesis factor 3 OS=Komagataella pastoris GN=PEX3 PE=1 SV=1 | 38 | 341 | 3.0E-23 |
| sp|Q6BK00|PEX3_DEBHA | Peroxisomal biogenesis factor 3 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=PEX3 PE=3 SV=1 | 48 | 344 | 6.0E-21 |
| sp|P28795|PEX3_YEAST | Peroxisomal biogenesis factor 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PEX3 PE=1 SV=1 | 47 | 341 | 2.0E-19 |
| sp|Q60HE1|PEX3_MACFA | Peroxisomal biogenesis factor 3 OS=Macaca fascicularis GN=PEX3 PE=2 SV=1 | 49 | 341 | 2.0E-17 |
| sp|Q9QXY9|PEX3_MOUSE | Peroxisomal biogenesis factor 3 OS=Mus musculus GN=Pex3 PE=1 SV=1 | 49 | 341 | 2.0E-17 |
| sp|A6H7C2|PEX3_BOVIN | Peroxisomal biogenesis factor 3 OS=Bos taurus GN=PEX3 PE=2 SV=1 | 44 | 341 | 2.0E-17 |
| sp|P56589|PEX3_HUMAN | Peroxisomal biogenesis factor 3 OS=Homo sapiens GN=PEX3 PE=1 SV=1 | 49 | 341 | 2.0E-17 |
| sp|O94227|PEX3_KLULA | Peroxisomal biogenesis factor 3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PEX3 PE=3 SV=1 | 15 | 341 | 3.0E-17 |
| sp|Q9JJK4|PEX3_RAT | Peroxisomal biogenesis factor 3 OS=Rattus norvegicus GN=Pex3 PE=1 SV=1 | 49 | 341 | 8.0E-17 |
| sp|Q9JJK3|PEX3_CRILO | Peroxisomal biogenesis factor 3 OS=Cricetulus longicaudatus GN=PEX3 PE=2 SV=1 | 49 | 341 | 1.0E-16 |
| sp|Q759H4|PEX3_ASHGO | Peroxisomal biogenesis factor 3 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=PEX3 PE=3 SV=1 | 47 | 341 | 5.0E-16 |
| sp|Q8S9K7|PEX32_ARATH | Peroxisome biogenesis protein 3-2 OS=Arabidopsis thaliana GN=PEX3-2 PE=2 SV=1 | 49 | 341 | 3.0E-09 |
| sp|Q54U86|PEX3_DICDI | Peroxisome biogenesis factor 3 OS=Dictyostelium discoideum GN=pex3 PE=3 SV=1 | 42 | 262 | 9.0E-08 |
| sp|Q8LDG7|PEX31_ARATH | Peroxisome biogenesis protein 3-1 OS=Arabidopsis thaliana GN=PEX3-1 PE=2 SV=2 | 49 | 341 | 6.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005779 | integral component of peroxisomal membrane | Yes |
| GO:0007031 | peroxisome organization | Yes |
| GO:0016043 | cellular component organization | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0031301 | integral component of organelle membrane | No |
| GO:0006996 | organelle organization | No |
| GO:0008150 | biological_process | No |
| GO:0031231 | intrinsic component of peroxisomal membrane | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0005575 | cellular_component | No |
| GO:0016021 | integral component of membrane | No |
| GO:0031300 | intrinsic component of organelle membrane | No |
| GO:0009987 | cellular process | No |
| GO:0110165 | cellular anatomical entity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 31 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 56 | 78 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|7954 MTDEDGKSLASMHSDSGIHASQIALPPSFAASTSTGQQDGGAQKTRKTKRQLWDDLAISAVTRAFTLIYILSLLT MLTRIQLNLLGRRSYLSSVVALATGAQQGTINLENKDDDNQEQDYGSDFDTNRKYLTFSWWLLNQGWILMMERVE RAVRSVFGNLSPRDLISLDSFSKLTMDVRKLVEGSTVEERHGSKWLEALLPPKDREDEVIRESGILQDNSAQGGA SLEQSSAALRRLLDETADIVESPLFCHVLTLSLDAAFSLLVDSKLATEAFGLGPQAELFERDSSDVGRTKAILLP KILSVLTRQAHIIGNGMPNEYLHEIEAVRAIEAFAAVVYSSNWENEMRDEGLMDDAVHVGGSANIGGSGLYEERQ SEPSIVVVDSSSGLQSAWERAVDKRT* |
| Coding | >OphauG2|7954 ATGACGGACGAGGACGGCAAGAGTCTGGCCAGCATGCACAGCGACAGTGGCATTCACGCCAGCCAAATTGCACTC CCACCGTCATTTGCTGCCTCTACATCAACGGGCCAGCAAGACGGCGGCGCACAGAAGACGCGCAAGACCAAGAGG CAGCTATGGGACGACCTGGCCATTAGCGCCGTTACAAGAGCCTTTACCCTCATCTACATTCTCTCCCTTCTCACC ATGCTGACCCGGATTCAGCTCAATCTTTTGGGCCGTCGGAGCTACCTATCGAGCGTTGTTGCTCTCGCGACGGGA GCACAACAAGGCACCATCAACCTGGAAAACAAGGATGACGATAACCAAGAGCAAGACTATGGCAGCGATTTCGAC ACAAACCGCAAATATCTGACGTTTAGCTGGTGGCTACTCAACCAGGGCTGGATTCTCATGATGGAGCGTGTCGAG CGTGCCGTGCGAAGCGTTTTTGGAAACCTGAGCCCTCGGGATCTCATCAGCCTCGACAGCTTTTCCAAGCTGACA ATGGATGTGAGGAAGCTGGTCGAGGGGTCTACGGTCGAGGAGCGACACGGGTCCAAATGGCTCGAGGCGCTGCTT CCACCAAAAGACCGGGAAGACGAAGTGATTCGCGAATCAGGCATCCTCCAAGACAACTCAGCCCAGGGAGGCGCC TCTCTGGAGCAATCGTCGGCAGCGCTGCGGCGGCTGCTGGATGAAACGGCTGACATTGTCGAATCGCCTCTTTTT TGCCACGTCTTGACGCTAAGTCTTGATGCTGCCTTTTCCCTGCTTGTTGATAGCAAGTTGGCCACTGAGGCTTTT GGCCTTGGCCCACAAGCCGAATTGTTCGAGCGTGACTCGTCAGATGTGGGGAGGACCAAGGCAATACTGCTGCCC AAGATTCTGTCGGTTCTAACGCGCCAGGCGCACATTATTGGCAACGGCATGCCCAACGAGTACCTACACGAGATA GAGGCGGTTCGAGCTATTGAAGCCTTTGCCGCCGTTGTTTACTCGAGCAACTGGGAAAACGAGATGCGCGATGAA GGGCTGATGGACGATGCTGTCCATGTCGGAGGCAGCGCCAATATAGGCGGCAGCGGGTTGTACGAGGAGCGACAG AGCGAGCCAAGCATCGTCGTGGTGGACTCGTCGAGCGGACTGCAGAGTGCATGGGAGAGGGCTGTGGATAAGAGG ACGTAA |
| Transcript | >OphauG2|7954 ATGACGGACGAGGACGGCAAGAGTCTGGCCAGCATGCACAGCGACAGTGGCATTCACGCCAGCCAAATTGCACTC CCACCGTCATTTGCTGCCTCTACATCAACGGGCCAGCAAGACGGCGGCGCACAGAAGACGCGCAAGACCAAGAGG CAGCTATGGGACGACCTGGCCATTAGCGCCGTTACAAGAGCCTTTACCCTCATCTACATTCTCTCCCTTCTCACC ATGCTGACCCGGATTCAGCTCAATCTTTTGGGCCGTCGGAGCTACCTATCGAGCGTTGTTGCTCTCGCGACGGGA GCACAACAAGGCACCATCAACCTGGAAAACAAGGATGACGATAACCAAGAGCAAGACTATGGCAGCGATTTCGAC ACAAACCGCAAATATCTGACGTTTAGCTGGTGGCTACTCAACCAGGGCTGGATTCTCATGATGGAGCGTGTCGAG CGTGCCGTGCGAAGCGTTTTTGGAAACCTGAGCCCTCGGGATCTCATCAGCCTCGACAGCTTTTCCAAGCTGACA ATGGATGTGAGGAAGCTGGTCGAGGGGTCTACGGTCGAGGAGCGACACGGGTCCAAATGGCTCGAGGCGCTGCTT CCACCAAAAGACCGGGAAGACGAAGTGATTCGCGAATCAGGCATCCTCCAAGACAACTCAGCCCAGGGAGGCGCC TCTCTGGAGCAATCGTCGGCAGCGCTGCGGCGGCTGCTGGATGAAACGGCTGACATTGTCGAATCGCCTCTTTTT TGCCACGTCTTGACGCTAAGTCTTGATGCTGCCTTTTCCCTGCTTGTTGATAGCAAGTTGGCCACTGAGGCTTTT GGCCTTGGCCCACAAGCCGAATTGTTCGAGCGTGACTCGTCAGATGTGGGGAGGACCAAGGCAATACTGCTGCCC AAGATTCTGTCGGTTCTAACGCGCCAGGCGCACATTATTGGCAACGGCATGCCCAACGAGTACCTACACGAGATA GAGGCGGTTCGAGCTATTGAAGCCTTTGCCGCCGTTGTTTACTCGAGCAACTGGGAAAACGAGATGCGCGATGAA GGGCTGATGGACGATGCTGTCCATGTCGGAGGCAGCGCCAATATAGGCGGCAGCGGGTTGTACGAGGAGCGACAG AGCGAGCCAAGCATCGTCGTGGTGGACTCGTCGAGCGGACTGCAGAGTGCATGGGAGAGGGCTGTGGATAAGAGG ACGTAA |
| Gene | >OphauG2|7954 ATGACGGACGAGGACGGCAAGAGTCTGGCCAGCATGCACAGCGACAGTGGCATTCACGCCAGCCAAATTGCACTC CCACCGTCATTTGCTGCCTCTACATCAACGGGCCAGCAAGACGGCGGCGCACAGAAGACGCGCAAGACCAAGAGG CAGCTATGGGACGACCTGGCCATTAGCGGTGCGCCCTTGACTTTTTCCTCTTCTTTCATACTTGATGCTTGTAGC TGATGATTACAACCCAATAGCCGTTACAAGAGCCTTTACCCTCATCTACATTCTCTCCCTTCTCACCATGCTGAC CCGGATTCAGCTCAATCTTTTGGGCCGTCGGAGCTACCTATCGAGCGTTGTTGCTCTCGCGACGGGAGCACAACA AGGCACCATCAACCTGGAAAACAAGGATGACGATAACCAAGAGCAAGACTATGGCAGCGATTTCGACACAAACCG CAAATATCTGACGTTTAGCTGGTGGCTACTCAACCAGGGCTGGATTCTCATGATGGAGCGTGTCGAGCGTGCCGT GCGAAGCGTTTTTGGAAACCTGAGCCCTCGGGATCTCATCAGCCTCGACAGCTTTTCCAAGCTGACAATGGATGT GAGGAAGCTGGTCGAGGGGTCTACGGTCGAGGAGCGACACGGGTCCAAATGGCTCGAGGCGCTGCTTCCACCAAA AGACCGGGAAGACGAAGTGATTCGCGAATCAGGCATCCTCCAAGACAACTCAGCCCAGGGAGGCGCCTCTCTGGA GCAATCGTCGGCAGCGCTGCGGCGGCTGCTGGATGAAACGGCTGACATTGTCGAATCGCCTCTTTTTTGCCACGT CTTGACGCTAAGTCTTGATGCTGCCTTTTCCCTGCTTGTTGATAGCAAGTTGGCCACTGAGGCTTTTGGCCTTGG CCCACAAGCCGAATTGTTCGAGCGTGACTCGTCAGATGTGGGGAGGACCAAGGCAATACTGCTGCCCAAGATTCT GTCGGTTCTAACGCGCCAGGCGCACATTATTGGCAACGGCATGCCCAACGAGTACCTACACGAGATAGAGGCGGT TCGAGCTATTGAAGCCTTTGCCGCCGTTGTTTACTCGAGCAACTGGGAAAACGAGATGCGCGATGAAGGGCTGAT GGACGATGCTGTCCATGTCGGAGGCAGCGCCAATATAGGCGGCAGCGGGTTGTACGAGGAGCGACAGAGCGAGCC AAGCATCGTCGTGGTGGACTCGTCGAGCGGACTGCAGAGTGCATGGGAGAGGGCTGTGGATAAGAGGACGTAA |