© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|7905 |
| Gene name | |
| Location | Contig_973:257..2002 |
| Strand | - |
| Gene length (bp) | 1745 |
| Transcript length (bp) | 1506 |
| Coding sequence length (bp) | 1506 |
| Protein length (aa) | 502 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08606 | Prp19 | Prp19/Pso4-like | 1.5E-30 | 66 | 131 |
| PF00400 | WD40 | WD domain, G-beta repeat | 3.0E-02 | 314 | 344 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O14011|PRP19_SCHPO | Pre-mRNA-processing factor 19 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp19 PE=1 SV=1 | 1 | 472 | 1.0E-72 |
| sp|Q94BR4|PR19A_ARATH | Pre-mRNA-processing factor 19 homolog 1 OS=Arabidopsis thaliana GN=PRP19A PE=1 SV=1 | 1 | 484 | 5.0E-70 |
| sp|Q9AV81|PRP19_ORYSJ | Pre-mRNA-processing factor 19 OS=Oryza sativa subsp. japonica GN=PRP19 PE=2 SV=1 | 1 | 486 | 1.0E-69 |
| sp|Q08E38|PRP19_BOVIN | Pre-mRNA-processing factor 19 OS=Bos taurus GN=PRPF19 PE=2 SV=1 | 1 | 465 | 5.0E-68 |
| sp|O22785|PR19B_ARATH | Pre-mRNA-processing factor 19 homolog 2 OS=Arabidopsis thaliana GN=PRP19B PE=1 SV=3 | 1 | 478 | 8.0E-68 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O14011|PRP19_SCHPO | Pre-mRNA-processing factor 19 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp19 PE=1 SV=1 | 1 | 472 | 1.0E-72 |
| sp|Q94BR4|PR19A_ARATH | Pre-mRNA-processing factor 19 homolog 1 OS=Arabidopsis thaliana GN=PRP19A PE=1 SV=1 | 1 | 484 | 5.0E-70 |
| sp|Q9AV81|PRP19_ORYSJ | Pre-mRNA-processing factor 19 OS=Oryza sativa subsp. japonica GN=PRP19 PE=2 SV=1 | 1 | 486 | 1.0E-69 |
| sp|Q08E38|PRP19_BOVIN | Pre-mRNA-processing factor 19 OS=Bos taurus GN=PRPF19 PE=2 SV=1 | 1 | 465 | 5.0E-68 |
| sp|O22785|PR19B_ARATH | Pre-mRNA-processing factor 19 homolog 2 OS=Arabidopsis thaliana GN=PRP19B PE=1 SV=3 | 1 | 478 | 8.0E-68 |
| sp|Q9UMS4|PRP19_HUMAN | Pre-mRNA-processing factor 19 OS=Homo sapiens GN=PRPF19 PE=1 SV=1 | 1 | 465 | 1.0E-67 |
| sp|Q9JMJ4|PRP19_RAT | Pre-mRNA-processing factor 19 OS=Rattus norvegicus GN=Prpf19 PE=1 SV=2 | 1 | 471 | 2.0E-67 |
| sp|Q99KP6|PRP19_MOUSE | Pre-mRNA-processing factor 19 OS=Mus musculus GN=Prpf19 PE=1 SV=1 | 1 | 471 | 2.0E-67 |
| sp|Q7KWK5|PRP19_DICDI | Pre-mRNA-processing factor 19 OS=Dictyostelium discoideum GN=prp19 PE=3 SV=1 | 1 | 436 | 1.0E-66 |
| sp|Q5ZMA2|PRP19_CHICK | Pre-mRNA-processing factor 19 OS=Gallus gallus GN=PRPF19 PE=1 SV=1 | 1 | 471 | 2.0E-65 |
| sp|Q10051|PRP19_CAEEL | Pre-mRNA-processing factor 19 OS=Caenorhabditis elegans GN=prp-19 PE=3 SV=2 | 1 | 471 | 2.0E-56 |
| sp|P32523|PRP19_YEAST | Pre-mRNA-processing factor 19 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP19 PE=1 SV=2 | 1 | 131 | 4.0E-20 |
| sp|Q09150|REC14_SCHPO | Meiotic recombination protein rec14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rec14 PE=3 SV=1 | 203 | 378 | 1.0E-09 |
| sp|P33215|NEDD1_MOUSE | Protein NEDD1 OS=Mus musculus GN=Nedd1 PE=1 SV=2 | 211 | 381 | 2.0E-06 |
| sp|Q9Y1C1|EMAP_LYTVA | 77 kDa echinoderm microtubule-associated protein (Fragment) OS=Lytechinus variegatus GN=EMAP PE=2 SV=1 | 248 | 410 | 2.0E-06 |
| sp|P54313|GBB2_RAT | Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 OS=Rattus norvegicus GN=Gnb2 PE=1 SV=4 | 209 | 370 | 3.0E-06 |
| sp|P62880|GBB2_MOUSE | Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 OS=Mus musculus GN=Gnb2 PE=1 SV=3 | 209 | 370 | 3.0E-06 |
| sp|P62879|GBB2_HUMAN | Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 OS=Homo sapiens GN=GNB2 PE=1 SV=3 | 209 | 370 | 3.0E-06 |
| sp|P11017|GBB2_BOVIN | Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 OS=Bos taurus GN=GNB2 PE=2 SV=3 | 209 | 370 | 3.0E-06 |
| sp|Q17GR9|CIAO1_AEDAE | Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Aedes aegypti GN=Ciao1 PE=3 SV=1 | 267 | 381 | 9.0E-06 |
| sp|Q2TBP4|POC1A_BOVIN | POC1 centriolar protein homolog A OS=Bos taurus GN=POC1A PE=2 SV=1 | 216 | 446 | 1.0E-05 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| Orthofinder run ID | 4 |
| Orthogroup | 4295 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|7905 MLCAISGEAPQEPVVSKKSGIVYEKRLIQQYIGEHGTEPGSGDALVAEDLLPIKSAAIVRPRPPTLTSIPALLAT FQTEWDSLALETYNLREQLSRTREELATALYQHDAAVRVIARLSRERDEARHSLSKVTVIENDANGDKMMLDNVE ILPEALAARVDELHRSLSQERKGRAIPEEWVTPQEVSAFESIMSNPLSLARVNCLTLKGEFVALGDAKGEVSIYS LSSDAMVRQMSLGEPVTDVLWVGEKFYFTTTLGSIKVFEGGEMLASLSEHTGPATGLSMHPGGEILASVGTDKSI VFYETDTFTRLSRVHNDHALTTCAFHPDGHLFATGDVSGDVRLFRTTTLEQAASYQFDGPIQAISFSEKGFWLAT AVKGKSAVTMTDLRKSGPAASKELEASGPVLTLDWDYTGQFLAAGSDSGLTVHQYTRSTKQWNEIFRDSVPTSLV RWGTEGKKLVSVNEDGAVIVFGPPEEEEEEEPPQPNGDEAQEEEEEEEEEE* |
| Coding | >OphauG2|7905 ATGCTTTGCGCAATCTCTGGCGAGGCGCCGCAAGAGCCCGTCGTGTCCAAAAAGTCGGGCATTGTTTACGAGAAA CGCCTCATCCAACAGTACATCGGCGAGCATGGCACAGAGCCCGGCAGCGGCGACGCCCTCGTCGCTGAGGACCTC CTGCCCATCAAGTCGGCTGCCATTGTCCGCCCTCGCCCTCCAACACTGACCTCGATCCCTGCTCTTCTTGCCACC TTCCAGACCGAGTGGGACTCTCTTGCGCTCGAGACGTATAATCTCAGGGAGCAGCTATCACGGACGCGGGAAGAG CTAGCCACAGCCCTTTATCAACACGACGCTGCAGTCCGTGTCATTGCTCGTCTTTCACGAGAGCGAGACGAAGCA AGGCATTCTTTAAGCAAAGTAACAGTGATAGAAAACGACGCCAACGGAGACAAAATGATGCTCGATAATGTTGAG ATTCTTCCCGAGGCCTTGGCCGCCCGGGTAGACGAACTCCACCGAAGTCTTTCCCAAGAACGAAAGGGGCGAGCC ATTCCCGAGGAATGGGTCACCCCCCAAGAGGTTTCAGCCTTTGAGTCCATCATGTCCAACCCACTATCCTTGGCA CGAGTCAACTGCCTCACGCTTAAGGGCGAGTTTGTGGCTTTGGGCGACGCTAAGGGCGAGGTCTCCATATACTCC CTCTCTTCTGATGCTATGGTGCGTCAGATGTCTCTGGGCGAACCCGTTACGGATGTCCTCTGGGTCGGAGAAAAA TTCTACTTCACCACAACTCTGGGAAGCATCAAGGTGTTTGAAGGCGGGGAAATGTTGGCATCTCTTTCTGAGCAC ACTGGCCCCGCCACTGGCTTGAGCATGCATCCGGGCGGCGAGATTCTGGCCTCGGTCGGAACTGACAAGAGCATC GTGTTCTACGAGACGGACACGTTTACACGCCTCAGCCGTGTCCACAATGACCACGCCCTTACGACATGTGCCTTC CACCCCGATGGACACTTGTTTGCTACGGGTGATGTTTCTGGAGACGTCAGACTTTTCAGAACAACCACCCTGGAG CAGGCTGCCAGCTATCAATTCGATGGACCGATACAGGCTATCTCCTTCTCAGAAAAGGGCTTTTGGCTGGCAACA GCGGTCAAGGGAAAGAGTGCAGTCACCATGACTGATCTAAGAAAATCAGGCCCTGCTGCAAGCAAGGAACTGGAA GCAAGCGGACCAGTGCTGACTTTGGACTGGGACTACACGGGCCAGTTTCTGGCTGCAGGAAGCGATTCAGGGCTG ACTGTGCACCAATACACCAGATCTACTAAGCAATGGAACGAGATATTCCGAGATTCGGTGCCTACGTCATTGGTA CGGTGGGGCACTGAAGGCAAGAAGTTGGTTTCTGTCAATGAGGATGGCGCCGTGATCGTGTTTGGCCCCCCGGAG GAAGAGGAAGAGGAGGAGCCGCCGCAGCCGAATGGGGACGAGGCGCAAGAGGAGGAGGAGGAGGAGGAGGAGGAG GAGTAA |
| Transcript | >OphauG2|7905 ATGCTTTGCGCAATCTCTGGCGAGGCGCCGCAAGAGCCCGTCGTGTCCAAAAAGTCGGGCATTGTTTACGAGAAA CGCCTCATCCAACAGTACATCGGCGAGCATGGCACAGAGCCCGGCAGCGGCGACGCCCTCGTCGCTGAGGACCTC CTGCCCATCAAGTCGGCTGCCATTGTCCGCCCTCGCCCTCCAACACTGACCTCGATCCCTGCTCTTCTTGCCACC TTCCAGACCGAGTGGGACTCTCTTGCGCTCGAGACGTATAATCTCAGGGAGCAGCTATCACGGACGCGGGAAGAG CTAGCCACAGCCCTTTATCAACACGACGCTGCAGTCCGTGTCATTGCTCGTCTTTCACGAGAGCGAGACGAAGCA AGGCATTCTTTAAGCAAAGTAACAGTGATAGAAAACGACGCCAACGGAGACAAAATGATGCTCGATAATGTTGAG ATTCTTCCCGAGGCCTTGGCCGCCCGGGTAGACGAACTCCACCGAAGTCTTTCCCAAGAACGAAAGGGGCGAGCC ATTCCCGAGGAATGGGTCACCCCCCAAGAGGTTTCAGCCTTTGAGTCCATCATGTCCAACCCACTATCCTTGGCA CGAGTCAACTGCCTCACGCTTAAGGGCGAGTTTGTGGCTTTGGGCGACGCTAAGGGCGAGGTCTCCATATACTCC CTCTCTTCTGATGCTATGGTGCGTCAGATGTCTCTGGGCGAACCCGTTACGGATGTCCTCTGGGTCGGAGAAAAA TTCTACTTCACCACAACTCTGGGAAGCATCAAGGTGTTTGAAGGCGGGGAAATGTTGGCATCTCTTTCTGAGCAC ACTGGCCCCGCCACTGGCTTGAGCATGCATCCGGGCGGCGAGATTCTGGCCTCGGTCGGAACTGACAAGAGCATC GTGTTCTACGAGACGGACACGTTTACACGCCTCAGCCGTGTCCACAATGACCACGCCCTTACGACATGTGCCTTC CACCCCGATGGACACTTGTTTGCTACGGGTGATGTTTCTGGAGACGTCAGACTTTTCAGAACAACCACCCTGGAG CAGGCTGCCAGCTATCAATTCGATGGACCGATACAGGCTATCTCCTTCTCAGAAAAGGGCTTTTGGCTGGCAACA GCGGTCAAGGGAAAGAGTGCAGTCACCATGACTGATCTAAGAAAATCAGGCCCTGCTGCAAGCAAGGAACTGGAA GCAAGCGGACCAGTGCTGACTTTGGACTGGGACTACACGGGCCAGTTTCTGGCTGCAGGAAGCGATTCAGGGCTG ACTGTGCACCAATACACCAGATCTACTAAGCAATGGAACGAGATATTCCGAGATTCGGTGCCTACGTCATTGGTA CGGTGGGGCACTGAAGGCAAGAAGTTGGTTTCTGTCAATGAGGATGGCGCCGTGATCGTGTTTGGCCCCCCGGAG GAAGAGGAAGAGGAGGAGCCGCCGCAGCCGAATGGGGACGAGGCGCAAGAGGAGGAGGAGGAGGAGGAGGAGGAG GAGTAA |
| Gene | >OphauG2|7905 ATGCTTTGCGCAAGTAAGTCCAGCCTCGTGCCCCAGGCGCCCCCAAACTCTTGCATTGACGCAGCCTGCACAGTC TCTGGCGAGGCGCCGCAAGAGCCCGTCGTGTCCAAAAAGTCGGGTAGGTCCAACTTTGGCTCAAGAGCTCCATGG CAACTCGACCCGGCCAGCAGCTAACCCCGCCAACCCAGGCATTGTTTACGAGAAACGCCTCATCCAACAGTACAT CGGCGAGCATGGCACAGAGCCCGGCAGCGGCGACGCCCTCGTCGCTGAGGACCTCCTGCCCATCAAGTCGGCTGC CATTGTCCGCCCTCGCCCTCCAACACTGACCTCGATCCCTGCTCTTCTTGCCACCTTCCAGACCGAGTGGGACTC TCTTGCGCTCGAGACGTATAATCTCAGGGAGCAGCTATCACGGACGCGGGAAGAGCTAGCCACAGCCCTTTATCA ACACGACGCTGCAGTCCGTGTCATTGCTCGTCTTTCACGAGAGCGAGACGAAGCAAGGCATTCTTTAAGCAAAGT AACAGTGATAGAAAACGACGCCAACGGAGACAAAATGATGCTCGATAATGTTGAGATTCTTCCCGAGGCCTTGGC CGCCCGGGTAGACGAACTCCACCGAAGGTGAGGGCTGCTCTCCAACACTCCCCATTACCCAAGCCGCTCACCAGT CTCTAGTCTTTCCCAAGAACGAAAGGGGCGAGCCATTCCCGAGGAATGGGTCACCCCCCAAGAGGTTTCAGCCTT TGAGTCCATCATGTCCAACCCACTATCCTTGGCACGAGTCAACTGCCTCACGCTTAAGGGCGAGTTTGTGGCTTT GGGCGACGCTAAGGGCGAGGTCTCCATATACTCCCTCTCTTCTGATGCTATGGTGCGTCAGATGTCTCTGGGCGA ACCCGTTACGGATGTCCTCTGGGTCGGAGAAAAATTCTACTTCACCACAACTCTGGGAAGCATCAAGGTGTTTGA AGGCGGGGAAATGTTGGCATCTCTTTCTGAGCACACTGGCCCCGCCACTGGCTTGAGCATGCATCCGGGCGGCGA GATTCTGGCCTCGGTCGGAACTGACAAGAGCATCGTGTTCTACGAGACGGACACGTTTACACGCCTCAGCCGTGT CCACAATGACCACGGTAAGCCACTTGTCCATTTCATGGCTTTTTGGAGCACAATTTGCTGACCATGTAGCCCTTA CGACATGTGCCTTCCACCCCGATGGACACTTGTTTGCTACGGGTGATGTTTCTGGAGACGTCAGACTTTTCAGAA CAACCACCCTGGAGCAGGCTGCCAGCTATCAATTCGATGGACCGATACAGGCTATCTCCTTCTCAGAAAAGGGCT TTTGGCTGGCAACAGCGGTCAAGGGAAAGAGTGCAGTCACCATGACTGATCTAAGAAAATCAGGCCCTGCTGCAA GCAAGGAACTGGAAGCAAGCGGACCAGTGCTGACTTTGGACTGGGACTACACGGGCCAGTTTCTGGCTGCAGGAA GCGATTCAGGGCTGACTGTGCACCAATACACCAGATCTACTAAGCAATGGAACGAGATATTCCGAGATTCGGTGC CTACGTCATTGGTACGGTGGGGCACTGAAGGCAAGAAGTTGGTTTCTGTCAATGAGGATGGCGCCGTGATCGTGT TTGGCCCCCCGGAGGAAGAGGAAGAGGAGGAGCCGCCGCAGCCGAATGGGGACGAGGCGCAAGAGGAGGAGGAGG AGGAGGAGGAGGAGGAGTAA |