Fungal Genomics

at Utrecht University

General Properties

Protein ID	OphauG2\|789
Gene name
Location	Contig_120:20378..21068
Strand	-
Gene length (bp)	690
Transcript length (bp)	690
Coding sequence length (bp)	690
Protein length (aa)	230

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF12824	MRP-L20	Mitochondrial ribosomal protein subunit L20	1.2E-48	35	224

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|P22354\|RM20_YEAST	54S ribosomal protein L20, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRPL20 PE=1 SV=2	142	226	6.0E-12
sp\|O94723\|RM20_SCHPO	54S ribosomal protein L20, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrpl20 PE=3 SV=1	74	221	2.0E-09

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 14	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>OphauG2\|789 MHHQSFARLASRRVATRPLAPSPTCCSVSVFLHPSRSYETAARTKRALKVAPHASFLPDRRPPSPFPREEHIIYN PPASEASPVHTPFLFLPENDPRRVAMTRLRHEEELDTRSGQPPAADASNANAPSDLPPAMRYRRREQSYHLEEKE MKEMRRLRTEDPVKWSVGQLAKKFNCSPVFVSMVAPAPPGHLTWLREKLDRKMQRWGPMKTQAREDRRRRAELLY RGEL*
Coding	>OphauG2\|789 ATGCATCACCAGTCCTTTGCTCGTCTAGCATCACGACGCGTCGCAACTCGTCCTCTTGCTCCATCCCCGACATGT TGCTCCGTCTCGGTTTTCCTGCATCCTTCACGAAGCTATGAAACAGCAGCACGAACCAAGCGTGCCCTCAAGGTT GCTCCTCACGCATCCTTTCTCCCCGACAGACGACCTCCCTCTCCCTTTCCCCGAGAAGAGCACATCATTTACAAC CCGCCCGCCTCGGAGGCGTCCCCAGTCCATACGCCATTTCTCTTTTTGCCTGAAAATGACCCGAGACGTGTAGCC ATGACGCGGCTGCGCCATGAAGAAGAACTGGACACTCGATCCGGCCAACCCCCCGCTGCTGACGCCAGCAATGCT AATGCTCCCAGCGACCTTCCGCCAGCAATGCGCTATCGTCGAAGAGAACAAAGCTACCATCTCGAGGAAAAAGAA ATGAAGGAGATGCGTCGCCTGCGTACAGAGGACCCCGTCAAGTGGAGCGTGGGACAGCTTGCCAAAAAGTTCAAT TGCTCGCCCGTGTTTGTTAGCATGGTGGCCCCCGCACCTCCTGGGCATCTGACGTGGTTACGAGAAAAGTTGGAT CGGAAAATGCAACGATGGGGGCCGATGAAAACGCAGGCAAGGGAGGACCGCAGGCGAAGGGCAGAGCTGCTCTAT CGCGGCGAGCTGTAA
Transcript	>OphauG2\|789 ATGCATCACCAGTCCTTTGCTCGTCTAGCATCACGACGCGTCGCAACTCGTCCTCTTGCTCCATCCCCGACATGT TGCTCCGTCTCGGTTTTCCTGCATCCTTCACGAAGCTATGAAACAGCAGCACGAACCAAGCGTGCCCTCAAGGTT GCTCCTCACGCATCCTTTCTCCCCGACAGACGACCTCCCTCTCCCTTTCCCCGAGAAGAGCACATCATTTACAAC CCGCCCGCCTCGGAGGCGTCCCCAGTCCATACGCCATTTCTCTTTTTGCCTGAAAATGACCCGAGACGTGTAGCC ATGACGCGGCTGCGCCATGAAGAAGAACTGGACACTCGATCCGGCCAACCCCCCGCTGCTGACGCCAGCAATGCT AATGCTCCCAGCGACCTTCCGCCAGCAATGCGCTATCGTCGAAGAGAACAAAGCTACCATCTCGAGGAAAAAGAA ATGAAGGAGATGCGTCGCCTGCGTACAGAGGACCCCGTCAAGTGGAGCGTGGGACAGCTTGCCAAAAAGTTCAAT TGCTCGCCCGTGTTTGTTAGCATGGTGGCCCCCGCACCTCCTGGGCATCTGACGTGGTTACGAGAAAAGTTGGAT CGGAAAATGCAACGATGGGGGCCGATGAAAACGCAGGCAAGGGAGGACCGCAGGCGAAGGGCAGAGCTGCTCTAT CGCGGCGAGCTGTAA
Gene	>OphauG2\|789 ATGCATCACCAGTCCTTTGCTCGTCTAGCATCACGACGCGTCGCAACTCGTCCTCTTGCTCCATCCCCGACATGT TGCTCCGTCTCGGTTTTCCTGCATCCTTCACGAAGCTATGAAACAGCAGCACGAACCAAGCGTGCCCTCAAGGTT GCTCCTCACGCATCCTTTCTCCCCGACAGACGACCTCCCTCTCCCTTTCCCCGAGAAGAGCACATCATTTACAAC CCGCCCGCCTCGGAGGCGTCCCCAGTCCATACGCCATTTCTCTTTTTGCCTGAAAATGACCCGAGACGTGTAGCC ATGACGCGGCTGCGCCATGAAGAAGAACTGGACACTCGATCCGGCCAACCCCCCGCTGCTGACGCCAGCAATGCT AATGCTCCCAGCGACCTTCCGCCAGCAATGCGCTATCGTCGAAGAGAACAAAGCTACCATCTCGAGGAAAAAGAA ATGAAGGAGATGCGTCGCCTGCGTACAGAGGACCCCGTCAAGTGGAGCGTGGGACAGCTTGCCAAAAAGTTCAAT TGCTCGCCCGTGTTTGTTAGCATGGTGGCCCCCGCACCTCCTGGGCATCTGACGTGGTTACGAGAAAAGTTGGAT CGGAAAATGCAACGATGGGGGCCGATGAAAACGCAGGCAAGGGAGGACCGCAGGCGAAGGGCAGAGCTGCTCTAT CGCGGCGAGCTGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail