Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauG2|7857
Gene name
LocationContig_962:4523..6574
Strand+
Gene length (bp)2051
Transcript length (bp)1932
Coding sequence length (bp)1932
Protein length (aa) 644

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03467 Smg4_UPF3 Smg-4/UPF3 family 2.1E-45 91 259
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.4E-04 517 568

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q9FVW4|RENT3_ARATH Regulator of nonsense transcripts UPF3 OS=Arabidopsis thaliana GN=UPF3 PE=1 SV=1 86 260 2.0E-15
sp|Q10267|UPF3_SCHPO Nonsense-mediated mRNA decay protein 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=upf3 PE=3 SV=1 92 258 6.0E-07
sp|Q9H1J1|REN3A_HUMAN Regulator of nonsense transcripts 3A OS=Homo sapiens GN=UPF3A PE=1 SV=1 92 262 1.0E-06
sp|O94260|G3BP_SCHPO Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nxt3 PE=1 SV=1 514 624 1.0E-06
sp|B0S733|REN3A_DANRE Regulator of nonsense transcripts 3A OS=Danio rerio GN=upf3a PE=2 SV=2 92 262 4.0E-06

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0003674 molecular_function No
GO:1901363 heterocyclic compound binding No
GO:0005488 binding No
GO:0003676 nucleic acid binding No
GO:0097159 organic cyclic compound binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 12 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauG2|7857
MSASAPQAISRRPNGAPVASISQPREALNRAPAPLSRASAASNKMPQAKPSNEPQPQRPTVKGKGSPETTKNAST
SDGASRRAKTKAAVDGAKIVIRRLPPGMTEAEFTSILPPDYALGHGKVDWFSYRPGKVSVDPSKPSRPSRAYLHV
MCRDDIIPLCQIVRSATWEDARSTFTSPCLIGPPVLDFATYKRIPSTKSRFDPRQGTIDQDQEFMDFLEELANPS
PSKASVHDEDADEAAKDEAKVTTTPLVEYLKEKSANKGKDHATSKGAKPSLAKGKGVAKEDDLSKKRTREAKADG
KSSDPVKILTKKTPTETAAEAAKNVASQLSGSAATDAPKSRRAGIAAAARILQRDLGLSPGSAHRRARHDAAKAD
ADTKASLSKEPMAKMGEGQALSSDATAAASSSQTPKSHAEQSVAPEPQSTGRRGRGGRAADKGKAVETPSALVMN
PPVILKKKSEHQATDATLGTYPPFHDKTANGSATSGTPANPRINGGGKASSTPKKAATVTAGATRAFVKNVSSSQ
GVTEASLRQSLEVFGAVTSIEVDKRKNFAYVDFAQHQGFLGAVNASPVQVGQTTVQIVERKDKKPLGNGPVASPG
GSDKGSSRGRRGRGGGGGGSSSKVNGVQNGVAVLSSTNDGGTG*
Coding >OphauG2|7857
ATGTCGGCTTCCGCACCCCAGGCCATCTCGCGACGGCCGAATGGAGCGCCTGTGGCCTCAATATCGCAGCCGAGA
GAGGCCCTGAACAGAGCTCCCGCCCCTCTTTCCCGAGCCTCCGCCGCCTCCAACAAGATGCCCCAGGCCAAGCCG
TCCAATGAGCCCCAGCCCCAGCGCCCTACTGTCAAGGGCAAAGGCTCGCCAGAGACTACCAAAAATGCATCTACT
TCGGATGGTGCTTCCAGGCGAGCAAAGACCAAGGCCGCCGTTGACGGCGCAAAGATTGTCATACGACGCCTCCCC
CCCGGCATGACGGAAGCCGAGTTCACTTCCATCCTGCCTCCAGATTACGCCCTCGGCCACGGCAAAGTCGACTGG
TTCTCCTATCGTCCCGGTAAGGTGTCTGTAGACCCTTCAAAGCCGTCGCGTCCATCTCGAGCCTACCTACATGTC
ATGTGCAGGGATGACATCATTCCGCTCTGCCAAATTGTGCGATCAGCTACTTGGGAGGACGCCAGGTCGACTTTT
ACAAGCCCGTGTCTCATCGGTCCCCCCGTCCTCGACTTTGCCACGTACAAGCGCATTCCTAGTACCAAGTCACGC
TTCGACCCCAGACAGGGAACTATTGACCAGGATCAAGAATTCATGGACTTTTTGGAGGAGCTCGCCAATCCAAGC
CCATCCAAGGCAAGTGTCCACGATGAGGACGCTGACGAGGCGGCCAAGGATGAAGCCAAAGTGACAACGACGCCA
TTGGTAGAGTACCTCAAAGAGAAGTCCGCCAACAAGGGCAAAGATCATGCAACCAGCAAAGGGGCCAAACCGTCT
TTGGCCAAGGGCAAGGGTGTTGCTAAAGAGGACGACTTGTCCAAGAAAAGGACCCGAGAAGCCAAAGCAGACGGC
AAAAGTAGCGATCCAGTCAAGATTCTAACCAAGAAAACCCCGACAGAGACGGCAGCTGAGGCCGCCAAGAATGTG
GCAAGTCAGCTGAGCGGCAGTGCCGCAACTGATGCCCCCAAAAGCCGCCGAGCTGGAATTGCTGCCGCGGCCAGA
ATCTTGCAGCGAGACTTGGGCCTCAGCCCTGGCAGTGCTCACCGGCGTGCTAGGCACGACGCCGCGAAAGCAGAT
GCCGATACAAAGGCATCGCTGAGCAAGGAGCCCATGGCCAAGATGGGCGAAGGCCAGGCACTGTCGTCTGATGCG
ACGGCGGCTGCGTCGTCGTCCCAGACGCCCAAGAGCCATGCAGAGCAATCTGTTGCCCCAGAGCCCCAATCCACA
GGCCGTAGAGGCCGCGGTGGCAGGGCTGCAGACAAGGGCAAAGCTGTGGAGACTCCGAGTGCGCTCGTTATGAAT
CCGCCAGTGATTCTCAAGAAGAAGAGCGAACACCAAGCGACAGACGCGACTTTGGGCACGTACCCACCTTTTCAT
GACAAGACTGCCAATGGAAGTGCAACTTCTGGGACCCCTGCCAACCCGAGAATCAATGGTGGGGGAAAGGCGTCA
TCAACGCCCAAGAAAGCAGCGACAGTCACAGCTGGAGCGACGCGTGCCTTTGTCAAGAACGTCAGCTCTTCCCAG
GGTGTTACCGAAGCTTCTTTGCGCCAGTCCCTGGAAGTGTTTGGTGCGGTTACGTCGATCGAGGTTGACAAGCGC
AAGAACTTTGCCTACGTTGACTTTGCACAGCATCAAGGTTTCCTTGGCGCAGTCAATGCCAGTCCGGTACAAGTG
GGCCAGACCACGGTTCAGATTGTGGAGCGCAAGGACAAGAAGCCTCTAGGCAATGGCCCAGTGGCCAGCCCTGGC
GGATCAGACAAGGGATCCAGCCGTGGGCGACGCGGACGCGGAGGTGGCGGCGGCGGCAGCAGCAGCAAGGTCAAT
GGCGTCCAAAACGGCGTGGCCGTTTTGTCGTCTACTAATGATGGCGGGACTGGATGA
Transcript >OphauG2|7857
ATGTCGGCTTCCGCACCCCAGGCCATCTCGCGACGGCCGAATGGAGCGCCTGTGGCCTCAATATCGCAGCCGAGA
GAGGCCCTGAACAGAGCTCCCGCCCCTCTTTCCCGAGCCTCCGCCGCCTCCAACAAGATGCCCCAGGCCAAGCCG
TCCAATGAGCCCCAGCCCCAGCGCCCTACTGTCAAGGGCAAAGGCTCGCCAGAGACTACCAAAAATGCATCTACT
TCGGATGGTGCTTCCAGGCGAGCAAAGACCAAGGCCGCCGTTGACGGCGCAAAGATTGTCATACGACGCCTCCCC
CCCGGCATGACGGAAGCCGAGTTCACTTCCATCCTGCCTCCAGATTACGCCCTCGGCCACGGCAAAGTCGACTGG
TTCTCCTATCGTCCCGGTAAGGTGTCTGTAGACCCTTCAAAGCCGTCGCGTCCATCTCGAGCCTACCTACATGTC
ATGTGCAGGGATGACATCATTCCGCTCTGCCAAATTGTGCGATCAGCTACTTGGGAGGACGCCAGGTCGACTTTT
ACAAGCCCGTGTCTCATCGGTCCCCCCGTCCTCGACTTTGCCACGTACAAGCGCATTCCTAGTACCAAGTCACGC
TTCGACCCCAGACAGGGAACTATTGACCAGGATCAAGAATTCATGGACTTTTTGGAGGAGCTCGCCAATCCAAGC
CCATCCAAGGCAAGTGTCCACGATGAGGACGCTGACGAGGCGGCCAAGGATGAAGCCAAAGTGACAACGACGCCA
TTGGTAGAGTACCTCAAAGAGAAGTCCGCCAACAAGGGCAAAGATCATGCAACCAGCAAAGGGGCCAAACCGTCT
TTGGCCAAGGGCAAGGGTGTTGCTAAAGAGGACGACTTGTCCAAGAAAAGGACCCGAGAAGCCAAAGCAGACGGC
AAAAGTAGCGATCCAGTCAAGATTCTAACCAAGAAAACCCCGACAGAGACGGCAGCTGAGGCCGCCAAGAATGTG
GCAAGTCAGCTGAGCGGCAGTGCCGCAACTGATGCCCCCAAAAGCCGCCGAGCTGGAATTGCTGCCGCGGCCAGA
ATCTTGCAGCGAGACTTGGGCCTCAGCCCTGGCAGTGCTCACCGGCGTGCTAGGCACGACGCCGCGAAAGCAGAT
GCCGATACAAAGGCATCGCTGAGCAAGGAGCCCATGGCCAAGATGGGCGAAGGCCAGGCACTGTCGTCTGATGCG
ACGGCGGCTGCGTCGTCGTCCCAGACGCCCAAGAGCCATGCAGAGCAATCTGTTGCCCCAGAGCCCCAATCCACA
GGCCGTAGAGGCCGCGGTGGCAGGGCTGCAGACAAGGGCAAAGCTGTGGAGACTCCGAGTGCGCTCGTTATGAAT
CCGCCAGTGATTCTCAAGAAGAAGAGCGAACACCAAGCGACAGACGCGACTTTGGGCACGTACCCACCTTTTCAT
GACAAGACTGCCAATGGAAGTGCAACTTCTGGGACCCCTGCCAACCCGAGAATCAATGGTGGGGGAAAGGCGTCA
TCAACGCCCAAGAAAGCAGCGACAGTCACAGCTGGAGCGACGCGTGCCTTTGTCAAGAACGTCAGCTCTTCCCAG
GGTGTTACCGAAGCTTCTTTGCGCCAGTCCCTGGAAGTGTTTGGTGCGGTTACGTCGATCGAGGTTGACAAGCGC
AAGAACTTTGCCTACGTTGACTTTGCACAGCATCAAGGTTTCCTTGGCGCAGTCAATGCCAGTCCGGTACAAGTG
GGCCAGACCACGGTTCAGATTGTGGAGCGCAAGGACAAGAAGCCTCTAGGCAATGGCCCAGTGGCCAGCCCTGGC
GGATCAGACAAGGGATCCAGCCGTGGGCGACGCGGACGCGGAGGTGGCGGCGGCGGCAGCAGCAGCAAGGTCAAT
GGCGTCCAAAACGGCGTGGCCGTTTTGTCGTCTACTAATGATGGCGGGACTGGATGA
Gene >OphauG2|7857
ATGTCGGCTTCCGCACCCCAGGCCATCTCGCGACGGCCGAATGGAGCGCCTGTGGCCTCAATATCGCAGCCGAGA
GAGGCCCTGAACAGAGCTCCCGCCCCTCTTTCCCGAGCCTCCGCCGCCTCCAACAAGATGCCCCAGGCCAAGCCG
TCCAATGAGCCCCAGCCCCAGCGCCCTACTGTCAAGGGCAAAGGCTCGCCAGAGACTACCAAAGTCGGTTTGTTG
GTCTGCCGTGATGCATGATTTATCTGACCAGTTTCCTTTGTTCAGAATGCATCTACTTCGGATGGTGCTTCCAGG
CGAGCAAAGACCAAGGCCGCCGTTGACGGCGCAAAGATTGTCATACGACGCCTCCCCCCCGGCATGACGGAAGCC
GAGTTCACTTCCATCCTGCCTCCAGATTACGCCCTCGGCCACGGCAAAGTCGACTGGTTCTCCTATCGTCCCGGT
AAGGTGTCTGTAGAGTACGTCTTGCCTCTTGAATTAGCCCTGTTGCCCTCGCCTGCTGACGGACTGCCATGCAAA
GCCCTTCAAAGCCGTCGCGTCCATCTCGAGCCTACCTACATGTCATGTGCAGGGATGACATCATTCCGCTCTGCC
AAATTGTGCGATCAGCTACTTGGGAGGACGCCAGGTCGACTTTTACAAGCCCGTGTCTCATCGGTCCCCCCGTCC
TCGACTTTGCCACGTACAAGCGCATTCCTAGTACCAAGTCACGCTTCGACCCCAGACAGGGAACTATTGACCAGG
ATCAAGAATTCATGGACTTTTTGGAGGAGCTCGCCAATCCAAGCCCATCCAAGGCAAGTGTCCACGATGAGGACG
CTGACGAGGCGGCCAAGGATGAAGCCAAAGTGACAACGACGCCATTGGTAGAGTACCTCAAAGAGAAGTCCGCCA
ACAAGGGCAAAGATCATGCAACCAGCAAAGGGGCCAAACCGTCTTTGGCCAAGGGCAAGGGTGTTGCTAAAGAGG
ACGACTTGTCCAAGAAAAGGACCCGAGAAGCCAAAGCAGACGGCAAAAGTAGCGATCCAGTCAAGATTCTAACCA
AGAAAACCCCGACAGAGACGGCAGCTGAGGCCGCCAAGAATGTGGCAAGTCAGCTGAGCGGCAGTGCCGCAACTG
ATGCCCCCAAAAGCCGCCGAGCTGGAATTGCTGCCGCGGCCAGAATCTTGCAGCGAGACTTGGGCCTCAGCCCTG
GCAGTGCTCACCGGCGTGCTAGGCACGACGCCGCGAAAGCAGATGCCGATACAAAGGCATCGCTGAGCAAGGAGC
CCATGGCCAAGATGGGCGAAGGCCAGGCACTGTCGTCTGATGCGACGGCGGCTGCGTCGTCGTCCCAGACGCCCA
AGAGCCATGCAGAGCAATCTGTTGCCCCAGAGCCCCAATCCACAGGCCGTAGAGGCCGCGGTGGCAGGGCTGCAG
ACAAGGGCAAAGCTGTGGAGACTCCGAGTGCGCTCGTTATGAATCCGCCAGTGATTCTCAAGAAGAAGAGCGAAC
ACCAAGCGACAGACGCGACTTTGGGCACGTACCCACCTTTTCATGACAAGACTGCCAATGGAAGTGCAACTTCTG
GGACCCCTGCCAACCCGAGAATCAATGGTGGGGGAAAGGCGTCATCAACGCCCAAGAAAGCAGCGACAGTCACAG
CTGGAGCGACGCGTGCCTTTGTCAAGAACGTCAGCTCTTCCCAGGGTGTTACCGAAGCTTCTTTGCGCCAGTCCC
TGGAAGTGTTTGGTGCGGTTACGTCGATCGAGGTTGACAAGCGCAAGAACTTTGCCTACGTTGACTTTGCACAGC
ATCAAGGTTTCCTTGGCGCAGTCAATGCCAGTCCGGTACAAGTGGGCCAGACCACGGTTCAGATTGTGGAGCGCA
AGGACAAGAAGCCTCTAGGCAATGGCCCAGTGGCCAGCCCTGGCGGATCAGACAAGGGATCCAGCCGTGGGCGAC
GCGGACGCGGAGGTGGCGGCGGCGGCAGCAGCAGCAAGGTCAATGGCGTCCAAAACGGCGTGGCCGTTTTGTCGT
CTACTAATGATGGCGGGACTGGATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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