© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|7745 |
| Gene name | |
| Location | Contig_934:75..783 |
| Strand | - |
| Gene length (bp) | 708 |
| Transcript length (bp) | 609 |
| Coding sequence length (bp) | 609 |
| Protein length (aa) | 203 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 3.7E-07 | 8 | 69 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P87216|VIPI_SCHPO | Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vip1 PE=1 SV=1 | 7 | 191 | 6.0E-35 |
| sp|Q9LFD5|BPA1_ARATH | Binding partner of ACD11 1 OS=Arabidopsis thaliana GN=BPA1 PE=1 SV=1 | 6 | 171 | 3.0E-11 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 40 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|7745 MASPSTVHVKNIADSTSDSEVRDFFSFCGKISDFNVTTSGDTKSAQVTFEKPTAMKTALLLNNTQLGPNHITVTS QGSSDAADEHHINTARDSDDITQEEKPRARILAEYLAHGYVVGDAAIERAIDLDSKHGVSKRFVNTLNQLDEKCH ARDRARATDSNYGLTQRANSLLTGIGSYFERATNTPTGHSCRGSSPGRYQEE* |
| Coding | >OphauG2|7745 ATGGCATCCCCATCGACCGTCCACGTCAAGAACATTGCCGACTCGACAAGCGACTCTGAAGTCCGCGACTTTTTC AGCTTTTGCGGCAAGATTTCCGACTTCAATGTGACGACGAGCGGCGACACCAAGTCGGCCCAAGTGACGTTTGAA AAGCCAACCGCCATGAAGACGGCTCTGCTGCTCAACAATACGCAGCTGGGCCCCAACCACATCACCGTGACTAGC CAGGGATCCAGCGATGCCGCCGACGAGCATCACATCAACACGGCTCGTGACTCGGACGACATTACACAGGAGGAG AAGCCGCGTGCCCGCATTCTCGCCGAGTACCTGGCCCATGGCTACGTGGTTGGCGATGCTGCCATCGAGCGCGCC ATTGACCTTGACTCCAAGCACGGCGTTTCAAAACGCTTCGTCAACACGCTGAATCAGCTCGACGAAAAGTGCCAC GCCCGAGATCGCGCTCGCGCAACCGATTCCAACTACGGCCTGACGCAGCGTGCAAACTCGCTCCTCACAGGCATT GGCTCCTATTTCGAGCGCGCCACCAACACGCCCACGGGACATTCATGCCGAGGCTCGTCGCCTGGCCGATATCAA GAAGAGTGA |
| Transcript | >OphauG2|7745 ATGGCATCCCCATCGACCGTCCACGTCAAGAACATTGCCGACTCGACAAGCGACTCTGAAGTCCGCGACTTTTTC AGCTTTTGCGGCAAGATTTCCGACTTCAATGTGACGACGAGCGGCGACACCAAGTCGGCCCAAGTGACGTTTGAA AAGCCAACCGCCATGAAGACGGCTCTGCTGCTCAACAATACGCAGCTGGGCCCCAACCACATCACCGTGACTAGC CAGGGATCCAGCGATGCCGCCGACGAGCATCACATCAACACGGCTCGTGACTCGGACGACATTACACAGGAGGAG AAGCCGCGTGCCCGCATTCTCGCCGAGTACCTGGCCCATGGCTACGTGGTTGGCGATGCTGCCATCGAGCGCGCC ATTGACCTTGACTCCAAGCACGGCGTTTCAAAACGCTTCGTCAACACGCTGAATCAGCTCGACGAAAAGTGCCAC GCCCGAGATCGCGCTCGCGCAACCGATTCCAACTACGGCCTGACGCAGCGTGCAAACTCGCTCCTCACAGGCATT GGCTCCTATTTCGAGCGCGCCACCAACACGCCCACGGGACATTCATGCCGAGGCTCGTCGCCTGGCCGATATCAA GAAGAGTGA |
| Gene | >OphauG2|7745 ATGGCATCCCCATCGACCGTCCACGTCAAGAACATTGCCGACTCGACAAGCGACTCTGAAGTCCGCGACTTTTTC AGCTTTTGGTGAGCTTGCCACCACGACAGCCATGCTGCCAGATGCTGACGCTCCCCACAGCGGCAAGATTTCCGA CTTCAATGTGACGACGAGCGGCGACACCAAGTCGGCCCAAGTGACGTTTGAAAAGCCAACCGCCATGAAGACGGC TCTGCTGCTCAACAATACGCAGCTGGGCCCCAACCACATCACCGTGACTAGCCAGGGATCCAGCGATGCCGCCGA CGAGCATCACATCAACACGGCTCGTGACTCGGACGACATTACACAGGAGGAGAAGCCGCGTGCCCGCATTCTCGC CGAGTACCTGGCCCATGGCTACGTGGTTGGCGATGCTGCCATCGAGCGCGCCATTGACCTTGACTCCAAGCACGG CGTTTCAAAACGCTTCGTCAACACGCTGAATCAGCTCGACGAAAAGTGCCACGCCCGAGATCGCGCTCGCGCAAC CGATTCCAACTACGGCCTGACGCAGCGTGCAAACTCGCTCCTCACAGGCATTGGCTCCTATTTCGAGCGCGCCAC CAACACGCCCACGGGTAAGAAGCTGGTCAAGTTCTACACGGATGGCTCTCGACAGGTGCAGGACATTCATGCCGA GGCTCGTCGCCTGGCCGATATCAAGAAGAGTGA |