Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauG2|7745
Gene name
LocationContig_934:75..783
Strand-
Gene length (bp)708
Transcript length (bp)609
Coding sequence length (bp)609
Protein length (aa) 203

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.7E-07 8 69

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P87216|VIPI_SCHPO Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vip1 PE=1 SV=1 7 191 6.0E-35
sp|Q9LFD5|BPA1_ARATH Binding partner of ACD11 1 OS=Arabidopsis thaliana GN=BPA1 PE=1 SV=1 6 171 3.0E-11

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0003674 molecular_function No
GO:1901363 heterocyclic compound binding No
GO:0005488 binding No
GO:0003676 nucleic acid binding No
GO:0097159 organic cyclic compound binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 40 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauG2|7745
MASPSTVHVKNIADSTSDSEVRDFFSFCGKISDFNVTTSGDTKSAQVTFEKPTAMKTALLLNNTQLGPNHITVTS
QGSSDAADEHHINTARDSDDITQEEKPRARILAEYLAHGYVVGDAAIERAIDLDSKHGVSKRFVNTLNQLDEKCH
ARDRARATDSNYGLTQRANSLLTGIGSYFERATNTPTGHSCRGSSPGRYQEE*
Coding >OphauG2|7745
ATGGCATCCCCATCGACCGTCCACGTCAAGAACATTGCCGACTCGACAAGCGACTCTGAAGTCCGCGACTTTTTC
AGCTTTTGCGGCAAGATTTCCGACTTCAATGTGACGACGAGCGGCGACACCAAGTCGGCCCAAGTGACGTTTGAA
AAGCCAACCGCCATGAAGACGGCTCTGCTGCTCAACAATACGCAGCTGGGCCCCAACCACATCACCGTGACTAGC
CAGGGATCCAGCGATGCCGCCGACGAGCATCACATCAACACGGCTCGTGACTCGGACGACATTACACAGGAGGAG
AAGCCGCGTGCCCGCATTCTCGCCGAGTACCTGGCCCATGGCTACGTGGTTGGCGATGCTGCCATCGAGCGCGCC
ATTGACCTTGACTCCAAGCACGGCGTTTCAAAACGCTTCGTCAACACGCTGAATCAGCTCGACGAAAAGTGCCAC
GCCCGAGATCGCGCTCGCGCAACCGATTCCAACTACGGCCTGACGCAGCGTGCAAACTCGCTCCTCACAGGCATT
GGCTCCTATTTCGAGCGCGCCACCAACACGCCCACGGGACATTCATGCCGAGGCTCGTCGCCTGGCCGATATCAA
GAAGAGTGA
Transcript >OphauG2|7745
ATGGCATCCCCATCGACCGTCCACGTCAAGAACATTGCCGACTCGACAAGCGACTCTGAAGTCCGCGACTTTTTC
AGCTTTTGCGGCAAGATTTCCGACTTCAATGTGACGACGAGCGGCGACACCAAGTCGGCCCAAGTGACGTTTGAA
AAGCCAACCGCCATGAAGACGGCTCTGCTGCTCAACAATACGCAGCTGGGCCCCAACCACATCACCGTGACTAGC
CAGGGATCCAGCGATGCCGCCGACGAGCATCACATCAACACGGCTCGTGACTCGGACGACATTACACAGGAGGAG
AAGCCGCGTGCCCGCATTCTCGCCGAGTACCTGGCCCATGGCTACGTGGTTGGCGATGCTGCCATCGAGCGCGCC
ATTGACCTTGACTCCAAGCACGGCGTTTCAAAACGCTTCGTCAACACGCTGAATCAGCTCGACGAAAAGTGCCAC
GCCCGAGATCGCGCTCGCGCAACCGATTCCAACTACGGCCTGACGCAGCGTGCAAACTCGCTCCTCACAGGCATT
GGCTCCTATTTCGAGCGCGCCACCAACACGCCCACGGGACATTCATGCCGAGGCTCGTCGCCTGGCCGATATCAA
GAAGAGTGA
Gene >OphauG2|7745
ATGGCATCCCCATCGACCGTCCACGTCAAGAACATTGCCGACTCGACAAGCGACTCTGAAGTCCGCGACTTTTTC
AGCTTTTGGTGAGCTTGCCACCACGACAGCCATGCTGCCAGATGCTGACGCTCCCCACAGCGGCAAGATTTCCGA
CTTCAATGTGACGACGAGCGGCGACACCAAGTCGGCCCAAGTGACGTTTGAAAAGCCAACCGCCATGAAGACGGC
TCTGCTGCTCAACAATACGCAGCTGGGCCCCAACCACATCACCGTGACTAGCCAGGGATCCAGCGATGCCGCCGA
CGAGCATCACATCAACACGGCTCGTGACTCGGACGACATTACACAGGAGGAGAAGCCGCGTGCCCGCATTCTCGC
CGAGTACCTGGCCCATGGCTACGTGGTTGGCGATGCTGCCATCGAGCGCGCCATTGACCTTGACTCCAAGCACGG
CGTTTCAAAACGCTTCGTCAACACGCTGAATCAGCTCGACGAAAAGTGCCACGCCCGAGATCGCGCTCGCGCAAC
CGATTCCAACTACGGCCTGACGCAGCGTGCAAACTCGCTCCTCACAGGCATTGGCTCCTATTTCGAGCGCGCCAC
CAACACGCCCACGGGTAAGAAGCTGGTCAAGTTCTACACGGATGGCTCTCGACAGGTGCAGGACATTCATGCCGA
GGCTCGTCGCCTGGCCGATATCAAGAAGAGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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