Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauG2|7709
Gene name
LocationContig_924:6566..7270
Strand+
Gene length (bp)704
Transcript length (bp)624
Coding sequence length (bp)624
Protein length (aa) 208

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00172 Zn_clus Fungal Zn(2)-Cys(6) binuclear cluster domain 2.3E-10 37 71

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|O59741|YN25_SCHPO Uncharacterized transcriptional regulatory protein C530.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC530.05 PE=3 SV=2 16 83 1.0E-08
sp|Q1MTM9|YFN1_SCHPO Uncharacterized transcriptional regulatory protein C1327.01c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1327.01c PE=1 SV=2 32 110 2.0E-07
sp|P28349|NIT4_NEUCR Nitrogen assimilation transcription factor nit-4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=nit-4 PE=3 SV=2 31 128 3.0E-06
sp|Q5A4G2|MRR1_CANAL Multidrug resistance regulator 1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=MRR1 PE=1 SV=1 11 68 3.0E-06

GO

GO Term Description Terminal node
GO:0008270 zinc ion binding Yes
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific Yes
GO:0006355 regulation of transcription, DNA-templated Yes
GO:0031323 regulation of cellular metabolic process No
GO:0050794 regulation of cellular process No
GO:1903506 regulation of nucleic acid-templated transcription No
GO:2001141 regulation of RNA biosynthetic process No
GO:0019222 regulation of metabolic process No
GO:0043167 ion binding No
GO:0046872 metal ion binding No
GO:0050789 regulation of biological process No
GO:0019219 regulation of nucleobase-containing compound metabolic process No
GO:0010468 regulation of gene expression No
GO:0060255 regulation of macromolecule metabolic process No
GO:0080090 regulation of primary metabolic process No
GO:0008150 biological_process No
GO:0140110 transcription regulator activity No
GO:0009889 regulation of biosynthetic process No
GO:0065007 biological regulation No
GO:0005488 binding No
GO:0046914 transition metal ion binding No
GO:0003674 molecular_function No
GO:0051171 regulation of nitrogen compound metabolic process No
GO:0010556 regulation of macromolecule biosynthetic process No
GO:0003700 DNA-binding transcription factor activity No
GO:0043169 cation binding No
GO:0051252 regulation of RNA metabolic process No
GO:0031326 regulation of cellular biosynthetic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 14 0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
Fungal Specific TF

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauG2|7709
MKRHPRPLLAATTTDASPGRTPPPQPPQLFKRKAVSTACQVCRSRKVRCDGQRPSCAPCRQRNMPCEYPAPETTT
PQLRDQLKLAKEENAKLYDFLHVVATLPRCEVDALLGKIRTATDPDSLLRLVKESSSSPLMRLGQDVADGIHDKQ
LRELDLEALRTSPFKVSARPWTMLAGDGLVSSLVSSFFAWDDAFAYPFVDREAFMRE*
Coding >OphauG2|7709
ATGAAGCGCCACCCTCGTCCTTTGCTTGCCGCCACCACGACCGACGCCTCCCCAGGCCGCACGCCTCCCCCCCAA
CCGCCACAGCTCTTCAAACGCAAAGCCGTCTCCACGGCGTGCCAAGTCTGTCGCAGCCGCAAAGTCCGCTGCGAC
GGCCAGCGCCCCAGCTGTGCGCCGTGCCGCCAGCGAAACATGCCGTGCGAATACCCCGCCCCCGAAACGACGACG
CCCCAGCTCCGAGACCAGCTCAAGCTGGCCAAGGAAGAAAATGCAAAACTATACGACTTCCTACACGTGGTGGCG
ACGCTGCCGCGCTGCGAGGTGGATGCTCTCCTGGGCAAGATCCGTACGGCAACGGACCCTGACTCCCTGTTGCGG
CTGGTTAAAGAGTCGTCGTCGTCGCCGTTGATGCGGCTTGGGCAAGACGTGGCAGACGGGATACACGATAAACAG
CTCCGCGAGCTGGATCTCGAAGCGCTGCGCACCAGCCCCTTCAAGGTGTCGGCTCGGCCGTGGACAATGCTGGCC
GGAGACGGCTTGGTGTCCAGCCTCGTGTCCTCCTTTTTCGCCTGGGACGACGCCTTTGCATATCCCTTTGTCGAC
CGCGAGGCCTTTATGCGTGAGTGA
Transcript >OphauG2|7709
ATGAAGCGCCACCCTCGTCCTTTGCTTGCCGCCACCACGACCGACGCCTCCCCAGGCCGCACGCCTCCCCCCCAA
CCGCCACAGCTCTTCAAACGCAAAGCCGTCTCCACGGCGTGCCAAGTCTGTCGCAGCCGCAAAGTCCGCTGCGAC
GGCCAGCGCCCCAGCTGTGCGCCGTGCCGCCAGCGAAACATGCCGTGCGAATACCCCGCCCCCGAAACGACGACG
CCCCAGCTCCGAGACCAGCTCAAGCTGGCCAAGGAAGAAAATGCAAAACTATACGACTTCCTACACGTGGTGGCG
ACGCTGCCGCGCTGCGAGGTGGATGCTCTCCTGGGCAAGATCCGTACGGCAACGGACCCTGACTCCCTGTTGCGG
CTGGTTAAAGAGTCGTCGTCGTCGCCGTTGATGCGGCTTGGGCAAGACGTGGCAGACGGGATACACGATAAACAG
CTCCGCGAGCTGGATCTCGAAGCGCTGCGCACCAGCCCCTTCAAGGTGTCGGCTCGGCCGTGGACAATGCTGGCC
GGAGACGGCTTGGTGTCCAGCCTCGTGTCCTCCTTTTTCGCCTGGGACGACGCCTTTGCATATCCCTTTGTCGAC
CGCGAGGCCTTTATGCGTGAGTGA
Gene >OphauG2|7709
ATGAAGCGCCACCCTCGTCCTTTGCTTGCCGCCACCACGACCGACGCCTCCCCAGGCCGCACGCCTCCCCCCCAA
CCGCCACAGCTCTTCAAACGCAAAGCCGTCTCCACGGCGTGCCAAGTCTGTCGCAGCCGCAAAGTCCGCTGCGAC
GGCCAGCGCCCCAGCTGTGCGCCGTGCCGCCAGCGAAACATGCCGTGCGAATACCCCGCCCCCGAAACGACGACG
CCCCAGCTCCGAGACCAGCTCAAGCTGGCCAAGGAAGAAAATGCAAAACTATACGACTTCCTACACGTGGTGGCG
ACGCTGCCGCGCTGCGAGGTGGATGCTCTCCTGGGCAAGATCCGTACGGCAACGGACCCTGACTCCCTGTTGCGG
CTGGTTAAAGAGTCGTCGTCGTCGCCGTTGATGCGGCTTGGGCAAGACGTGGCAGACGGGATACACGATAAACAG
CTCCGCGAGCTGGATCTCGAAGCGCTGCGCACCAGCCCCTTCAAGGTGTCGGCTCGGCCGTGGACAATGCTGGCC
GGAGACGGCTTGGTGTCCAGCCTCGTGTCCTCCTTTTTCGCCTGGGACGACGCCTTTGCATATCCCTTTGTCGAC
CGCGAGGCCTTTGTCACCGACATGCAAGCAAACTCGATCCAAGGGGCCAAGTACTGCTCGCCTCTTCTCGTGAAT
GCCATGTGTGCTGCCAGATGCGTGAGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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