© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|7657 |
| Gene name | |
| Location | Contig_912:2202..4498 |
| Strand | - |
| Gene length (bp) | 2296 |
| Transcript length (bp) | 1869 |
| Coding sequence length (bp) | 1869 |
| Protein length (aa) | 623 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02837 | Glyco_hydro_2_N | Glycosyl hydrolases family 2, sugar binding domain | 1.4E-15 | 115 | 219 |
| PF02836 | Glyco_hydro_2_C | Glycosyl hydrolases family 2, TIM barrel domain | 7.2E-08 | 355 | 485 |
| PF00703 | Glyco_hydro_2 | Glycosyl hydrolases family 2 | 1.2E-06 | 257 | 313 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P06760|BGLR_RAT | Beta-glucuronidase OS=Rattus norvegicus GN=Gusb PE=2 SV=1 | 64 | 474 | 2.0E-22 |
| sp|A7LXS9|BGH2A_BACO1 | Beta-galactosidase BoGH2A OS=Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM 5824 / NCTC 11153) GN=BACOVA_02645 PE=1 SV=1 | 7 | 442 | 5.0E-21 |
| sp|O18835|BGLR_CANLF | Beta-glucuronidase OS=Canis lupus familiaris GN=GUSB PE=1 SV=1 | 43 | 474 | 1.0E-20 |
| sp|P77989|BGAL_THEP3 | Beta-galactosidase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=lacZ PE=3 SV=2 | 118 | 399 | 1.0E-20 |
| sp|P05804|BGLR_ECOLI | Beta-glucuronidase OS=Escherichia coli (strain K12) GN=uidA PE=1 SV=2 | 64 | 473 | 2.0E-20 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P06760|BGLR_RAT | Beta-glucuronidase OS=Rattus norvegicus GN=Gusb PE=2 SV=1 | 64 | 474 | 2.0E-22 |
| sp|A7LXS9|BGH2A_BACO1 | Beta-galactosidase BoGH2A OS=Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM 5824 / NCTC 11153) GN=BACOVA_02645 PE=1 SV=1 | 7 | 442 | 5.0E-21 |
| sp|O18835|BGLR_CANLF | Beta-glucuronidase OS=Canis lupus familiaris GN=GUSB PE=1 SV=1 | 43 | 474 | 1.0E-20 |
| sp|P77989|BGAL_THEP3 | Beta-galactosidase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=lacZ PE=3 SV=2 | 118 | 399 | 1.0E-20 |
| sp|P05804|BGLR_ECOLI | Beta-glucuronidase OS=Escherichia coli (strain K12) GN=uidA PE=1 SV=2 | 64 | 473 | 2.0E-20 |
| sp|O97524|BGLR_FELCA | Beta-glucuronidase OS=Felis catus GN=GUSB PE=1 SV=1 | 55 | 474 | 6.0E-20 |
| sp|Q4FAT7|BGLR_PIG | Beta-glucuronidase OS=Sus scrofa GN=GUSB PE=3 SV=1 | 55 | 474 | 2.0E-19 |
| sp|O77695|BGLR_CHLAE | Beta-glucuronidase (Fragment) OS=Chlorocebus aethiops GN=GUSB PE=2 SV=1 | 55 | 474 | 1.0E-18 |
| sp|Q9K9C6|BGAL_BACHD | Beta-galactosidase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=lacZ PE=3 SV=1 | 32 | 596 | 2.0E-18 |
| sp|Q5R5N6|BGLR_PONAB | Beta-glucuronidase OS=Pongo abelii GN=GUSB PE=2 SV=2 | 43 | 474 | 2.0E-18 |
| sp|P12265|BGLR_MOUSE | Beta-glucuronidase OS=Mus musculus GN=Gusb PE=1 SV=2 | 55 | 474 | 2.0E-18 |
| sp|P08236|BGLR_HUMAN | Beta-glucuronidase OS=Homo sapiens GN=GUSB PE=1 SV=2 | 43 | 474 | 2.0E-17 |
| sp|P26257|BGAL_THETU | Beta-galactosidase OS=Thermoanaerobacterium thermosulfurigenes GN=lacZ PE=1 SV=1 | 119 | 468 | 2.0E-16 |
| sp|Q56307|BGAL_THEMA | Beta-galactosidase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=lacZ PE=3 SV=2 | 119 | 470 | 8.0E-15 |
| sp|A1SWB8|BGAL_PSYIN | Beta-galactosidase OS=Psychromonas ingrahamii (strain 37) GN=lacZ PE=3 SV=1 | 119 | 484 | 5.0E-13 |
| sp|Q48727|BGAL_LACLA | Beta-galactosidase OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=lacZ PE=3 SV=3 | 64 | 452 | 1.0E-12 |
| sp|O52847|BGAL_BACMD | Beta-galactosidase OS=Bacillus megaterium (strain DSM 319) GN=bgaM PE=3 SV=1 | 65 | 397 | 4.0E-12 |
| sp|P06864|BGA2_ECOLI | Evolved beta-galactosidase subunit alpha OS=Escherichia coli (strain K12) GN=ebgA PE=1 SV=4 | 119 | 470 | 4.0E-11 |
| sp|Q0CCA0|MANBB_ASPTN | Beta-mannosidase B OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=mndB PE=3 SV=2 | 66 | 442 | 1.0E-08 |
| sp|P0C1Y0|BGAL_LACDE | Beta-galactosidase OS=Lactobacillus delbrueckii subsp. bulgaricus GN=lacZ PE=1 SV=2 | 121 | 483 | 4.0E-08 |
| sp|Q1G9Z4|BGAL_LACDA | Beta-galactosidase OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081 / JCM 1002 / NBRC 13953 / NCIMB 11778) GN=lacZ PE=3 SV=3 | 121 | 483 | 4.0E-08 |
| sp|P81650|BGAL_PSEHA | Beta-galactosidase OS=Pseudoalteromonas haloplanktis GN=lacZ PE=1 SV=2 | 279 | 468 | 1.0E-07 |
| sp|B4S2K9|BGAL_ALTMD | Beta-galactosidase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=lacZ PE=3 SV=1 | 138 | 468 | 4.0E-07 |
| sp|B2VHN8|BGAL_ERWT9 | Beta-galactosidase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=lacZ PE=3 SV=1 | 275 | 484 | 1.0E-06 |
| sp|A4W7D2|BGAL_ENT38 | Beta-galactosidase OS=Enterobacter sp. (strain 638) GN=lacZ PE=3 SV=1 | 263 | 470 | 1.0E-06 |
| sp|Q03WL0|BGAL_LEUMM | Beta-galactosidase OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=lacZ PE=3 SV=1 | 138 | 470 | 4.0E-06 |
| sp|A8GGN3|BGAL_SERP5 | Beta-galactosidase OS=Serratia proteamaculans (strain 568) GN=lacZ PE=3 SV=1 | 281 | 475 | 6.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | Yes |
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0003674 | molecular_function | No |
| GO:0016787 | hydrolase activity | No |
| GO:0044238 | primary metabolic process | No |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| GO:0003824 | catalytic activity | No |
| GO:0008152 | metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 20 | 0.999755 |
| CAZyme category | E-value | Start | End |
|---|---|---|---|
| GH2 | 2.8E-95 | 61 | 487 |
| Orthofinder run ID | 4 |
| Orthogroup | 4559 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|7657 MHLTPAALGYAALLIGLCQAQQQLEKRAPTPYKVQKPPLDTDWTYKVGTDPWPEYPRPQLRRNEWQSLNGIWTFQ GLKGNEEDLEALGSIAPEREILIPSCIESGLSGIQELNITNMWFERQFEVPKEWSNKTILLNFEAVDYETSVFVN NVKVGSHVGGYFRFSIDITANVKHGQENRLLVAVYDPTDMDVIPVGKQTVNPRHIWYRPCSGIWQSVWMEAVAPN YITKLDVSAGMDGVVNFKASSSRGSPTSLSFSVMDASGKVVATACAKSDTDSKVVVKDPLLWTPDSPHLYNISVT MGQDKVDSYTGFRTISAGRVNDVQRPLLNGRFTFMFGTLDQGYWPDGIYTPPNREAMIYDLKLLKSLGFNTIRKH IKVEPALFYQACDELGLMVIQDMPSLPDDHRRPPNAAQQLEFERQLELLINQLKSYTSIVTWIIYNEGWGQLRHA PYPEEKLSKKVRSLDPTRLIDSVTGWHDHGFGDFSDNHHYANPQCGTPFSSIDSSPYDEARIGFQGEFGGIGHVV DKHIWNVQDAIDTINQTYEISLDLDAYNYRAHVVLRELREQVELYACSGGLWTQTTDVEGEVNGLYTYDRRVLRP YIKQWRDDIQSLYEAARGRGGA* |
| Coding | >OphauG2|7657 ATGCATCTCACACCCGCCGCACTGGGCTATGCTGCCCTGCTCATTGGGCTATGCCAGGCGCAGCAGCAGCTGGAG AAGCGCGCCCCAACGCCATACAAGGTGCAGAAGCCGCCTCTCGACACCGACTGGACATACAAGGTGGGCACGGAT CCATGGCCCGAGTATCCCCGGCCACAGCTCCGGCGCAACGAGTGGCAAAGCCTCAATGGGATTTGGACGTTTCAA GGCCTCAAGGGCAACGAGGAAGACCTGGAGGCGCTTGGCAGCATCGCGCCGGAGCGTGAGATTTTGATCCCGTCG TGCATTGAGAGCGGGCTGTCTGGAATCCAGGAGCTCAACATTACGAATATGTGGTTTGAGCGACAATTCGAGGTG CCCAAGGAGTGGAGCAACAAGACGATTCTGCTCAATTTTGAAGCGGTGGATTACGAAACAAGCGTCTTTGTCAAT AATGTCAAGGTTGGCAGCCATGTTGGCGGATACTTTCGCTTTAGCATTGACATTACGGCCAATGTCAAGCATGGC CAAGAAAACCGCCTACTAGTGGCCGTCTATGACCCAACAGACATGGATGTTATTCCCGTCGGCAAACAAACCGTC AATCCAAGGCACATCTGGTATCGGCCCTGCTCAGGAATCTGGCAGAGCGTGTGGATGGAGGCCGTGGCGCCAAAC TACATTACCAAGCTCGATGTCTCTGCCGGCATGGACGGTGTAGTCAACTTCAAGGCATCCAGCTCCCGCGGAAGC CCAACGAGCCTCAGCTTCTCAGTCATGGACGCCAGCGGCAAAGTGGTGGCGACAGCATGCGCCAAGTCGGACACG GACTCCAAGGTGGTGGTCAAGGACCCCTTGCTCTGGACGCCAGACTCGCCTCACCTCTACAACATCTCGGTGACC ATGGGCCAGGACAAGGTGGACAGCTACACGGGCTTCCGCACCATCTCGGCTGGCCGGGTCAACGACGTGCAGCGG CCGCTGCTCAACGGCCGCTTCACCTTTATGTTTGGCACGCTTGACCAGGGATACTGGCCAGATGGAATATACACG CCGCCCAATCGCGAGGCCATGATTTACGACTTGAAGCTGCTCAAGTCTCTGGGCTTCAACACGATTCGAAAACAC ATCAAGGTTGAGCCTGCGCTCTTTTACCAGGCGTGCGACGAGCTGGGCTTGATGGTCATCCAAGACATGCCCAGC CTGCCAGACGACCACCGGCGTCCCCCAAACGCAGCACAGCAGCTGGAATTCGAGCGCCAACTCGAGCTTCTTATC AACCAGTTGAAAAGCTACACGTCGATAGTCACATGGATTATTTACAACGAAGGTTGGGGCCAGCTGCGGCACGCG CCATACCCCGAGGAAAAACTTAGCAAAAAGGTTCGAAGTCTGGATCCCACCAGGCTCATTGACTCGGTGACTGGC TGGCATGACCACGGCTTCGGTGATTTTTCGGACAACCACCACTACGCCAACCCGCAATGCGGCACGCCCTTTTCC TCGATAGATTCGTCTCCGTATGATGAGGCGCGCATCGGCTTCCAGGGCGAGTTTGGCGGCATCGGCCACGTTGTG GATAAGCATATCTGGAATGTGCAAGACGCGATAGACACCATCAACCAGACGTACGAGATTAGCCTCGATCTGGAT GCCTACAACTACAGAGCGCACGTTGTGCTCCGCGAGCTAAGGGAGCAGGTTGAGCTGTATGCATGCAGCGGCGGG CTGTGGACGCAGACAACAGACGTCGAGGGCGAAGTCAATGGGCTGTACACGTATGACCGGCGGGTATTGCGGCCG TATATCAAGCAGTGGAGAGACGATATTCAAAGCCTGTACGAGGCGGCTCGGGGACGGGGCGGGGCATGA |
| Transcript | >OphauG2|7657 ATGCATCTCACACCCGCCGCACTGGGCTATGCTGCCCTGCTCATTGGGCTATGCCAGGCGCAGCAGCAGCTGGAG AAGCGCGCCCCAACGCCATACAAGGTGCAGAAGCCGCCTCTCGACACCGACTGGACATACAAGGTGGGCACGGAT CCATGGCCCGAGTATCCCCGGCCACAGCTCCGGCGCAACGAGTGGCAAAGCCTCAATGGGATTTGGACGTTTCAA GGCCTCAAGGGCAACGAGGAAGACCTGGAGGCGCTTGGCAGCATCGCGCCGGAGCGTGAGATTTTGATCCCGTCG TGCATTGAGAGCGGGCTGTCTGGAATCCAGGAGCTCAACATTACGAATATGTGGTTTGAGCGACAATTCGAGGTG CCCAAGGAGTGGAGCAACAAGACGATTCTGCTCAATTTTGAAGCGGTGGATTACGAAACAAGCGTCTTTGTCAAT AATGTCAAGGTTGGCAGCCATGTTGGCGGATACTTTCGCTTTAGCATTGACATTACGGCCAATGTCAAGCATGGC CAAGAAAACCGCCTACTAGTGGCCGTCTATGACCCAACAGACATGGATGTTATTCCCGTCGGCAAACAAACCGTC AATCCAAGGCACATCTGGTATCGGCCCTGCTCAGGAATCTGGCAGAGCGTGTGGATGGAGGCCGTGGCGCCAAAC TACATTACCAAGCTCGATGTCTCTGCCGGCATGGACGGTGTAGTCAACTTCAAGGCATCCAGCTCCCGCGGAAGC CCAACGAGCCTCAGCTTCTCAGTCATGGACGCCAGCGGCAAAGTGGTGGCGACAGCATGCGCCAAGTCGGACACG GACTCCAAGGTGGTGGTCAAGGACCCCTTGCTCTGGACGCCAGACTCGCCTCACCTCTACAACATCTCGGTGACC ATGGGCCAGGACAAGGTGGACAGCTACACGGGCTTCCGCACCATCTCGGCTGGCCGGGTCAACGACGTGCAGCGG CCGCTGCTCAACGGCCGCTTCACCTTTATGTTTGGCACGCTTGACCAGGGATACTGGCCAGATGGAATATACACG CCGCCCAATCGCGAGGCCATGATTTACGACTTGAAGCTGCTCAAGTCTCTGGGCTTCAACACGATTCGAAAACAC ATCAAGGTTGAGCCTGCGCTCTTTTACCAGGCGTGCGACGAGCTGGGCTTGATGGTCATCCAAGACATGCCCAGC CTGCCAGACGACCACCGGCGTCCCCCAAACGCAGCACAGCAGCTGGAATTCGAGCGCCAACTCGAGCTTCTTATC AACCAGTTGAAAAGCTACACGTCGATAGTCACATGGATTATTTACAACGAAGGTTGGGGCCAGCTGCGGCACGCG CCATACCCCGAGGAAAAACTTAGCAAAAAGGTTCGAAGTCTGGATCCCACCAGGCTCATTGACTCGGTGACTGGC TGGCATGACCACGGCTTCGGTGATTTTTCGGACAACCACCACTACGCCAACCCGCAATGCGGCACGCCCTTTTCC TCGATAGATTCGTCTCCGTATGATGAGGCGCGCATCGGCTTCCAGGGCGAGTTTGGCGGCATCGGCCACGTTGTG GATAAGCATATCTGGAATGTGCAAGACGCGATAGACACCATCAACCAGACGTACGAGATTAGCCTCGATCTGGAT GCCTACAACTACAGAGCGCACGTTGTGCTCCGCGAGCTAAGGGAGCAGGTTGAGCTGTATGCATGCAGCGGCGGG CTGTGGACGCAGACAACAGACGTCGAGGGCGAAGTCAATGGGCTGTACACGTATGACCGGCGGGTATTGCGGCCG TATATCAAGCAGTGGAGAGACGATATTCAAAGCCTGTACGAGGCGGCTCGGGGACGGGGCGGGGCATGA |
| Gene | >OphauG2|7657 ATGCATCTCACACCCGCCGCACTGGGCTATGCTGCCCTGCTCATTGGGCTATGCCAGGCGCAGCAGCAGCTGGAG AAGCGCGCCCCAACGCCATACAAGGTGCAGAAGCCGCCTCTCGACACCGACTGGACATACAAGGTGGGCACGGAT CCATGGCCCGAGTATCCCCGGCCACAGCTCCGGCGCAACGAGTGGCAAAGCCTCAATGGGATTTGGACGTTTCAA GGCCTCAAGGGCAACGAGGAAGACCTGGAGGCGCTTGGCAGCATCGCGCCGGAGCGTGAGATTTTGATCCCGTCG TGCATTGAGAGCGGGCTGTCTGGAATCCAGGAGCTCAACATTACGAATATGTGGTTTGAGCGACAATTCGAGGTG CCCAAGGAGTGGAGCAACAAGACGATTCTGCTCAATTTTGAAGCGGTGGATTACGAAACAAGCGTCTTTGTCAAT AATGTCAAGGTTGGCAGCCATGTTGGCGGATACTTTCGCTTTAGCATTGACATTACGGCCAATGTCAAGCATGGC CAAGAAAACCGCCTGTAAGCCTCTTGCTCGAGAAGAAGGAAGCATGATATGAAGCATAATGAAAAAGAAGAGAAG CATAAGGAAAACAAAGAGAAGCATAATAAAAAAGAAGAGAAGCATTTTGGAAAAAAAGAGGAAAAAAACAAAAAA AACAAAGACTAACCGTCAATGTACAGACTAGTGGCCGTCTATGACCCAACAGACATGGATGTTATTCCCGTCGGC AAACAAACCGTCAATCCAAGGCACATCTGGTATCGGCCCTGCTCAGGAATCTGGCAGAGCGTGTGGATGGAGGCC GTGGCGCCAAACTACATTACCAAGCTCGATGTCTCTGCCGGCATGGACGGTGTAGTCAACTTCAAGGCATCCAGC TCCCGCGGAAGCCCAACGAGCCTCAGCTTCTCAGTCATGGACGCCAGCGGCAAAGTGGTGGCGACAGCATGCGCC AAGTCGGACACGGACTCCAAGGTGGTGGTCAAGGACCCCTTGCTCTGGACGCCAGACTCGCCTCACCTCTACAAC ATCTCGGTGACCATGGGCCAGGACAAGGTGGACAGCTACACGGGCTTCCGCACCATCTCGGCTGGCCGGGTCAAC GACGTGCAGCGGCCGCTGCTCAACGGCCGCTTCACCTTTATGTTTGGCACGCTTGACCAGGGATACTGGCCAGAT GGAATATACACGCCGCCCAATCGCGAGGCCATGATTTACGACTTGAAGCTGCTCAAGTCTCTGGGCTTCAACACG ATTCGAAAACACGTTGGTCTCATGGATTGTCTCGCAGGCTGTGCTCGCTACTGACGCTTTGAGACGGCAGATCAA GGTTGAGCCTGCGCTCTTTTACCAGGCGTGCGACGAGCTGGGCTTGATGGTCATCCAAGACATGCCCAGCCTGCC AGACGACCACCGGCGTCCCCCAAACGCAGCACAGCAGCTGGAATTCGAGCGCCAACTCGAGCTTCTTATCAACCA GTTGAAAAGCTACACGTCGATAGTCACATGGGTCAGTCGCACCATGGTGGAAGCCAATCATGGGCGATTCATCAA TTAACATTTTCTCCCTTGCTGGATAGATTATTTACAACGAAGGTTGGGGCCAGCTGCGGCACGCGCCATACCCCG AGGAAAAACTTAGCAAAAAGGTTCGAAGTCTGGATCCCACCAGGCTCATTGACTCGGTGACTGGCTGGCATGACC ACGGCTTCGGTGATTTTTCGGTACAGTGGCCAAAGCACAGCTTCGAGCGCGCGCGTTGAGAGCTAACGAGAAACC ATGACAGGACAACCACCACTACGCCAACCCGCAATGCGGCACGCCCTTTTCCTCGATAGATTCGTCTCCGTATGA TGAGGCGCGCATCGGCTTCCAGGGCGAGTTTGGCGGCATCGGCCACGTTGTGGATAAGCAGTAAGGGCCTATCCT CCCTCTGCCAAGACTCTGGCCATGTGTGTGTTTTTTTTTTTTTAACTCGAATGGGCACAGTATCTGGAATGTGCA AGACGCGATAGACACCATCAACCAGACGTACGAGATTAGCCTCGATCTGGATGCCTACAACTACAGAGCGCACGT TGTGCTCCGCGAGCTAAGGGAGCAGGTTGAGCTGTATGCATGCAGCGGCGGGCTGTGGACGCAGACAACAGACGT CGAGGGCGAAGTCAATGGGCTGTACACGTATGACCGGCGGGTATTGCGGCCGTATATCAAGCAGTGGAGAGACGA TATTCAAAGCCTGTACGAGGCGGCTCGGGGACGGGGCGGGGCATGA |