© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|7632 |
| Gene name | |
| Location | Contig_907:5050..6406 |
| Strand | + |
| Gene length (bp) | 1356 |
| Transcript length (bp) | 1218 |
| Coding sequence length (bp) | 1218 |
| Protein length (aa) | 406 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01755 | Glyco_transf_25 | Glycosyltransferase family 25 (LPS biosynthesis protein) | 2.1E-06 | 73 | 175 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|A5PMF6|GT251_DANRE | Procollagen galactosyltransferase 1 OS=Danio rerio GN=colgalt1 PE=3 SV=1 | 53 | 178 | 3.0E-08 |
| sp|A5PK45|GT251_BOVIN | Procollagen galactosyltransferase 1 OS=Bos taurus GN=COLGALT1 PE=2 SV=1 | 53 | 174 | 7.0E-08 |
| sp|A7MB73|GT253_BOVIN | Probable inactive glycosyltransferase 25 family member 3 OS=Bos taurus GN=CERCAM PE=2 SV=1 | 53 | 178 | 1.0E-07 |
| sp|Q5T4B2|GT253_HUMAN | Probable inactive glycosyltransferase 25 family member 3 OS=Homo sapiens GN=CERCAM PE=2 SV=1 | 70 | 178 | 1.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 27 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|7632 MHHSLFSKPLALIWAAIIIACGIILFRRDLFVASDAAHRYVASITKAPAAPFPQAAPSLVSLDTIQNRTLGFEKI FVVSLPSRTDRRDGMVLQAGLSDMAIEFIDGLQNSQISEPSIPKADDGSFLQDQGLGAWRAHMNAIQEVVRRNLS TAFIMEDDGDWDIRFKGQLQHVAQATRALVQPLASDSTSYADATFPRRPHGHAPVPDIMFDSLPETLPPQHSPYG DGWDVLWIGHCGQSFPKDDNQVLSRGRVIQNNDSTVPKKQHLESPFNQPFTLSDDYPDHTRAVHHSQQGICSAGY GVTQSGARQLLLELGLKEVTQPFDLLLRRFCDGTAGRGKHTCITTQPSLINVHRPRGHLASESDIGNAAEGFRAV GETKMIRISTRLNAAALLYGEEPKDQYPDE* |
| Coding | >OphauG2|7632 ATGCATCATTCACTCTTTTCCAAGCCACTAGCACTCATCTGGGCAGCCATCATCATTGCATGCGGGATTATACTC TTTCGCAGAGACTTGTTTGTTGCGTCGGATGCTGCTCATAGATACGTGGCTTCGATAACCAAGGCTCCTGCTGCT CCCTTTCCGCAGGCGGCTCCGAGTTTAGTCTCGCTTGATACTATCCAGAATCGCACTCTTGGCTTTGAAAAGATT TTCGTCGTCAGCCTGCCGTCAAGGACAGACCGGCGAGATGGCATGGTTCTGCAGGCCGGCCTTTCAGACATGGCC ATTGAGTTTATAGACGGCTTGCAAAACTCTCAAATCTCTGAACCGTCCATCCCCAAAGCCGACGATGGAAGCTTT TTACAGGACCAAGGACTAGGAGCGTGGAGAGCGCATATGAATGCGATACAAGAAGTTGTGCGGCGCAACTTGTCC ACAGCCTTCATCATGGAAGACGATGGCGACTGGGACATCCGGTTCAAAGGCCAGCTCCAACATGTTGCACAAGCC ACGCGCGCCCTCGTCCAGCCTCTTGCCAGCGACTCCACGTCCTACGCCGATGCTACATTTCCTCGCCGACCACAC GGCCACGCGCCCGTGCCTGACATTATGTTTGACTCGCTTCCAGAGACTCTGCCTCCCCAACACTCTCCCTACGGG GATGGCTGGGACGTTCTCTGGATCGGCCACTGCGGGCAAAGCTTTCCCAAAGACGACAACCAAGTGTTATCCCGA GGCCGCGTGATCCAAAACAACGATTCTACAGTGCCCAAAAAACAACACCTCGAATCGCCCTTTAACCAACCCTTC ACCCTCAGCGACGACTATCCCGACCATACCCGAGCCGTCCACCACTCCCAGCAGGGCATCTGTTCTGCTGGATAT GGCGTGACGCAGAGCGGAGCACGTCAACTGTTGCTGGAGCTGGGCTTGAAAGAAGTCACCCAGCCCTTTGACCTT CTCCTGCGACGCTTTTGCGACGGAACAGCCGGACGAGGAAAACACACTTGCATAACCACCCAGCCTTCGTTAATC AACGTGCACCGACCGCGCGGCCACTTGGCATCGGAAAGCGACATTGGGAATGCGGCCGAGGGCTTTCGAGCAGTG GGCGAAACAAAGATGATTCGCATCAGCACAAGACTAAATGCCGCAGCACTCTTGTACGGAGAGGAACCAAAAGAC CAATACCCCGATGAGTAG |
| Transcript | >OphauG2|7632 ATGCATCATTCACTCTTTTCCAAGCCACTAGCACTCATCTGGGCAGCCATCATCATTGCATGCGGGATTATACTC TTTCGCAGAGACTTGTTTGTTGCGTCGGATGCTGCTCATAGATACGTGGCTTCGATAACCAAGGCTCCTGCTGCT CCCTTTCCGCAGGCGGCTCCGAGTTTAGTCTCGCTTGATACTATCCAGAATCGCACTCTTGGCTTTGAAAAGATT TTCGTCGTCAGCCTGCCGTCAAGGACAGACCGGCGAGATGGCATGGTTCTGCAGGCCGGCCTTTCAGACATGGCC ATTGAGTTTATAGACGGCTTGCAAAACTCTCAAATCTCTGAACCGTCCATCCCCAAAGCCGACGATGGAAGCTTT TTACAGGACCAAGGACTAGGAGCGTGGAGAGCGCATATGAATGCGATACAAGAAGTTGTGCGGCGCAACTTGTCC ACAGCCTTCATCATGGAAGACGATGGCGACTGGGACATCCGGTTCAAAGGCCAGCTCCAACATGTTGCACAAGCC ACGCGCGCCCTCGTCCAGCCTCTTGCCAGCGACTCCACGTCCTACGCCGATGCTACATTTCCTCGCCGACCACAC GGCCACGCGCCCGTGCCTGACATTATGTTTGACTCGCTTCCAGAGACTCTGCCTCCCCAACACTCTCCCTACGGG GATGGCTGGGACGTTCTCTGGATCGGCCACTGCGGGCAAAGCTTTCCCAAAGACGACAACCAAGTGTTATCCCGA GGCCGCGTGATCCAAAACAACGATTCTACAGTGCCCAAAAAACAACACCTCGAATCGCCCTTTAACCAACCCTTC ACCCTCAGCGACGACTATCCCGACCATACCCGAGCCGTCCACCACTCCCAGCAGGGCATCTGTTCTGCTGGATAT GGCGTGACGCAGAGCGGAGCACGTCAACTGTTGCTGGAGCTGGGCTTGAAAGAAGTCACCCAGCCCTTTGACCTT CTCCTGCGACGCTTTTGCGACGGAACAGCCGGACGAGGAAAACACACTTGCATAACCACCCAGCCTTCGTTAATC AACGTGCACCGACCGCGCGGCCACTTGGCATCGGAAAGCGACATTGGGAATGCGGCCGAGGGCTTTCGAGCAGTG GGCGAAACAAAGATGATTCGCATCAGCACAAGACTAAATGCCGCAGCACTCTTGTACGGAGAGGAACCAAAAGAC CAATACCCCGATGAGTAG |
| Gene | >OphauG2|7632 ATGCATCATTCACTCTTTTCCAAGCCACTAGCACTCATCTGGGCAGCCATCATCATTGCATGCGGGATTATACTC TTTCGCAGAGACTTGTTTGTTGCGTCGGATGCTGCTCATAGATACGTGGCTTCGATAACCAAGGCTCCTGCTGCT CCCTTTCCGCAGGCGGCTCCGAGTTTAGTCTCGCTTGATACTATCCAGAATCGCACTCTTGGCGTGAGTTTGATC GACTTGCACCATGCTCCGATGTCGTATAGGTTCTAAACCCGGTTTTTGTTTTCTTCCTCGGGCATAGTTTGAAAA GATTTTCGTCGTCAGCCTGCCGTCAAGGACAGACCGGCGAGATGGCATGGTTCTGCAGGCCGGCCTTTCAGACAT GGCCATTGAGTTTATAGACGGCTTGCAAAACTCTCAAATCTCTGAACCGTCCATCCCCAAAGCCGACGATGGAAG CTTTTTACAGGACCAAGGACTAGGAGCGTGGAGAGCGCATATGAATGCGATACAAGAGTAAGCTTCAAGGACACC ACAGGCTGATTGTTGCCAAGACTCATGGAATCATGCTATAGAGTTGTGCGGCGCAACTTGTCCACAGCCTTCATC ATGGAAGACGATGGCGACTGGGACATCCGGTTCAAAGGCCAGCTCCAACATGTTGCACAAGCCACGCGCGCCCTC GTCCAGCCTCTTGCCAGCGACTCCACGTCCTACGCCGATGCTACATTTCCTCGCCGACCACACGGCCACGCGCCC GTGCCTGACATTATGTTTGACTCGCTTCCAGAGACTCTGCCTCCCCAACACTCTCCCTACGGGGATGGCTGGGAC GTTCTCTGGATCGGCCACTGCGGGCAAAGCTTTCCCAAAGACGACAACCAAGTGTTATCCCGAGGCCGCGTGATC CAAAACAACGATTCTACAGTGCCCAAAAAACAACACCTCGAATCGCCCTTTAACCAACCCTTCACCCTCAGCGAC GACTATCCCGACCATACCCGAGCCGTCCACCACTCCCAGCAGGGCATCTGTTCTGCTGGATATGGCGTGACGCAG AGCGGAGCACGTCAACTGTTGCTGGAGCTGGGCTTGAAAGAAGTCACCCAGCCCTTTGACCTTCTCCTGCGACGC TTTTGCGACGGAACAGCCGGACGAGGAAAACACACTTGCATAACCACCCAGCCTTCGTTAATCAACGTGCACCGA CCGCGCGGCCACTTGGCATCGGAAAGCGACATTGGGAATGCGGCCGAGGGCTTTCGAGCAGTGGGCGAAACAAAG ATGATTCGCATCAGCACAAGACTAAATGCCGCAGCACTCTTGTACGGAGAGGAACCAAAAGACCAATACCCCGAT GAGTAG |