© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|7598 |
| Gene name | |
| Location | Contig_90:17915..18763 |
| Strand | - |
| Gene length (bp) | 848 |
| Transcript length (bp) | 786 |
| Coding sequence length (bp) | 786 |
| Protein length (aa) | 262 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08058 | NPCC | Nuclear pore complex component | 2.4E-23 | 21 | 145 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|G0S7R3|POM34_CHATD | Nucleoporin POM34 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) GN=POM34 PE=3 SV=2 | 6 | 256 | 3.0E-44 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 64 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 73 | 95 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|7598 MSKTPNQAATAVAPQTVDSPGTWRHPRLQEISRRYRASTFSEKNLQRIVYNTLCLMALWSVQALVKRRNYSHFLS SSLGSTIGWIWFALQLVFVIQIIRECLPLVRTPDDLSDIPLTAAQRQLLGLPPCETPPTPNAVFSTPPRYSRTPS LPGSVGSRASYNSSPLSGRGSPAFQNSIGGSPFSSNSSPLMHKAGNAFSNGRNSSIGASPSPFGSSTSANLFPDV NPVGAKRAGIGLNSKWLYERSRRASANGTLFQSIYD* |
| Coding | >OphauG2|7598 ATGTCGAAGACGCCGAATCAAGCGGCCACTGCCGTAGCCCCCCAAACCGTCGACAGCCCGGGCACTTGGAGACAT CCTCGCCTCCAAGAAATTTCGCGCCGGTATCGCGCCTCTACTTTTTCAGAAAAGAACCTTCAACGCATTGTGTAC AACACTCTGTGCTTGATGGCGCTATGGTCTGTGCAGGCGCTGGTAAAGAGACGCAACTATTCTCACTTTCTGTCG AGCTCACTCGGCTCGACCATAGGCTGGATATGGTTCGCTCTCCAGCTCGTCTTTGTGATTCAGATTATCCGTGAA TGCCTGCCTCTTGTCCGCACTCCCGACGATCTTTCGGATATTCCACTCACAGCTGCGCAACGCCAACTCCTGGGC CTTCCGCCATGTGAAACCCCACCCACCCCCAATGCTGTATTCAGCACTCCTCCACGGTACTCTCGCACACCTTCA CTGCCTGGCTCCGTGGGCAGCAGGGCCAGCTACAATAGCTCTCCGCTTTCGGGTCGAGGCAGTCCAGCATTCCAA AACTCGATTGGGGGCTCCCCCTTTTCTTCCAATAGCAGTCCCTTGATGCATAAGGCTGGCAACGCGTTCTCAAAC GGCCGAAATTCTTCAATAGGGGCATCGCCGAGTCCCTTTGGCTCAAGCACATCGGCCAATCTGTTCCCCGACGTC AACCCTGTTGGAGCCAAGCGCGCTGGCATCGGACTTAACAGCAAGTGGCTCTACGAAAGGAGTCGCCGAGCATCG GCAAACGGTACCTTATTTCAGTCAATATACGACTAG |
| Transcript | >OphauG2|7598 ATGTCGAAGACGCCGAATCAAGCGGCCACTGCCGTAGCCCCCCAAACCGTCGACAGCCCGGGCACTTGGAGACAT CCTCGCCTCCAAGAAATTTCGCGCCGGTATCGCGCCTCTACTTTTTCAGAAAAGAACCTTCAACGCATTGTGTAC AACACTCTGTGCTTGATGGCGCTATGGTCTGTGCAGGCGCTGGTAAAGAGACGCAACTATTCTCACTTTCTGTCG AGCTCACTCGGCTCGACCATAGGCTGGATATGGTTCGCTCTCCAGCTCGTCTTTGTGATTCAGATTATCCGTGAA TGCCTGCCTCTTGTCCGCACTCCCGACGATCTTTCGGATATTCCACTCACAGCTGCGCAACGCCAACTCCTGGGC CTTCCGCCATGTGAAACCCCACCCACCCCCAATGCTGTATTCAGCACTCCTCCACGGTACTCTCGCACACCTTCA CTGCCTGGCTCCGTGGGCAGCAGGGCCAGCTACAATAGCTCTCCGCTTTCGGGTCGAGGCAGTCCAGCATTCCAA AACTCGATTGGGGGCTCCCCCTTTTCTTCCAATAGCAGTCCCTTGATGCATAAGGCTGGCAACGCGTTCTCAAAC GGCCGAAATTCTTCAATAGGGGCATCGCCGAGTCCCTTTGGCTCAAGCACATCGGCCAATCTGTTCCCCGACGTC AACCCTGTTGGAGCCAAGCGCGCTGGCATCGGACTTAACAGCAAGTGGCTCTACGAAAGGAGTCGCCGAGCATCG GCAAACGGTACCTTATTTCAGTCAATATACGACTAG |
| Gene | >OphauG2|7598 ATGTCGAAGACGCCGAATCAAGCGGCCACTGCCGTAGCCCCCCAAACCGTCGACAGCCCGGGCACTTGGAGACAT CCTCGCCTCCAAGAAATTTCGCGCCGGTATCGCGCCTCTACTTTTTCAGAAAAGAACCTTCAACGCATTGTGTAC AACACTCTGTGCTTGATGGCGCTATGGTCTGTGCAGGCGCTGGTAAAGAGACGCAACTATTCTCACTTGTACGGT TTTGATTCCATGCCTGTAGCGTGCACGCGCCTGGTTGTTGCTAACCGTGACACAGTCTGTCGAGCTCACTCGGCT CGACCATAGGCTGGATATGGTTCGCTCTCCAGCTCGTCTTTGTGATTCAGATTATCCGTGAATGCCTGCCTCTTG TCCGCACTCCCGACGATCTTTCGGATATTCCACTCACAGCTGCGCAACGCCAACTCCTGGGCCTTCCGCCATGTG AAACCCCACCCACCCCCAATGCTGTATTCAGCACTCCTCCACGGTACTCTCGCACACCTTCACTGCCTGGCTCCG TGGGCAGCAGGGCCAGCTACAATAGCTCTCCGCTTTCGGGTCGAGGCAGTCCAGCATTCCAAAACTCGATTGGGG GCTCCCCCTTTTCTTCCAATAGCAGTCCCTTGATGCATAAGGCTGGCAACGCGTTCTCAAACGGCCGAAATTCTT CAATAGGGGCATCGCCGAGTCCCTTTGGCTCAAGCACATCGGCCAATCTGTTCCCCGACGTCAACCCTGTTGGAG CCAAGCGCGCTGGCATCGGACTTAACAGCAAGTGGCTCTACGAAAGGAGTCGCCGAGCATCGGCAAACGGTACCT TATTTCAGTCAATATACGACTAG |