Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauG2|7592
Gene name
LocationContig_90:4185..4894
Strand-
Gene length (bp)709
Transcript length (bp)633
Coding sequence length (bp)633
Protein length (aa) 211

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF10447 EXOSC1 Exosome component EXOSC1/CSL4 1.9E-04 86 112
PF10447 EXOSC1 Exosome component EXOSC1/CSL4 1.5E-13 119 157
PF14382 ECR1_N Exosome complex exonuclease RRP4 N-terminal region 1.3E-10 11 47

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q9DAA6|EXOS1_MOUSE Exosome complex component CSL4 OS=Mus musculus GN=Exosc1 PE=1 SV=1 11 208 7.0E-42
sp|Q9Y3B2|EXOS1_HUMAN Exosome complex component CSL4 OS=Homo sapiens GN=EXOSC1 PE=1 SV=1 11 208 7.0E-41
sp|O59821|CSL4_SCHPO Exosome complex component csl4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=csl4 PE=3 SV=2 54 209 8.0E-39
sp|P53859|CSL4_YEAST Exosome complex component CSL4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CSL4 PE=1 SV=1 1 209 3.0E-29

GO

GO Term Description Terminal node
GO:0000178 exosome (RNase complex) Yes
GO:0003723 RNA binding Yes
GO:0003674 molecular_function No
GO:1902494 catalytic complex No
GO:1901363 heterocyclic compound binding No
GO:0032991 protein-containing complex No
GO:0005488 binding No
GO:0003676 nucleic acid binding No
GO:1905354 exoribonuclease complex No
GO:0097159 organic cyclic compound binding No
GO:0005575 cellular_component No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 47 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauG2|7592
MAVDQHMPAVAIPGDVLGPVSRYASGPGTHVYQGNVVSSLMGKVETTPPCQTPGPAKRLNKITAAIADQQRSIVS
VSRRPHGNQLLPEVGNVVLARVTRLMPKQAIVAIQQIGGTVLHTEWQGVIRVQDVRATEKDKVKIQESFKPGDIV
KAQVISLGDQANYYLSTASNELGVIMAMSEAGNDMVPISWKEFIDPETRLSEQRKVAKPS*
Coding >OphauG2|7592
ATGGCCGTCGACCAACACATGCCCGCCGTGGCCATCCCTGGCGATGTTCTGGGCCCCGTTAGCCGCTACGCTTCC
GGCCCAGGCACCCATGTCTACCAGGGCAATGTCGTCTCGTCTCTCATGGGCAAAGTCGAGACGACGCCGCCTTGT
CAGACCCCCGGACCCGCAAAGCGCCTCAACAAGATCACGGCAGCCATTGCCGACCAGCAGCGCTCCATCGTCTCC
GTCTCGCGCCGTCCTCACGGCAATCAGCTCTTGCCCGAGGTTGGCAATGTGGTTCTTGCCCGCGTCACTCGCCTC
ATGCCCAAGCAAGCCATTGTGGCCATTCAGCAGATTGGGGGCACCGTCCTGCACACCGAGTGGCAGGGCGTCATC
CGTGTACAGGATGTGAGGGCCACGGAAAAGGACAAGGTCAAGATTCAGGAATCATTCAAGCCCGGAGACATTGTC
AAGGCCCAGGTGATTTCCTTGGGTGACCAGGCCAACTATTATCTATCGACAGCGTCAAACGAGCTGGGAGTCATC
ATGGCCATGAGCGAGGCTGGCAACGACATGGTCCCCATTAGCTGGAAGGAATTTATAGACCCCGAGACACGTCTC
AGCGAGCAGAGAAAGGTTGCAAAACCCAGCTGA
Transcript >OphauG2|7592
ATGGCCGTCGACCAACACATGCCCGCCGTGGCCATCCCTGGCGATGTTCTGGGCCCCGTTAGCCGCTACGCTTCC
GGCCCAGGCACCCATGTCTACCAGGGCAATGTCGTCTCGTCTCTCATGGGCAAAGTCGAGACGACGCCGCCTTGT
CAGACCCCCGGACCCGCAAAGCGCCTCAACAAGATCACGGCAGCCATTGCCGACCAGCAGCGCTCCATCGTCTCC
GTCTCGCGCCGTCCTCACGGCAATCAGCTCTTGCCCGAGGTTGGCAATGTGGTTCTTGCCCGCGTCACTCGCCTC
ATGCCCAAGCAAGCCATTGTGGCCATTCAGCAGATTGGGGGCACCGTCCTGCACACCGAGTGGCAGGGCGTCATC
CGTGTACAGGATGTGAGGGCCACGGAAAAGGACAAGGTCAAGATTCAGGAATCATTCAAGCCCGGAGACATTGTC
AAGGCCCAGGTGATTTCCTTGGGTGACCAGGCCAACTATTATCTATCGACAGCGTCAAACGAGCTGGGAGTCATC
ATGGCCATGAGCGAGGCTGGCAACGACATGGTCCCCATTAGCTGGAAGGAATTTATAGACCCCGAGACACGTCTC
AGCGAGCAGAGAAAGGTTGCAAAACCCAGCTGA
Gene >OphauG2|7592
ATGGCCGTCGACCAACACATGCCCGCCGTGGCCATCCCTGGCGATGTTCTGGGCCCCGTTAGCCGCTACGCTTCC
GGCCCAGGCACCCATGTCTACCAGGGCAATGTCGTCTCGTCTCTCATGGGCAAAGTCGAGACGACGCCGCCTTGT
CAGACCCCCGGACCCGCAAAGCGCCTCAACAAGATCACGGCAGCCATTGCCGACCAGCAGCGCTCCATCGTCTCC
GTCTCGCGCCGTCCTCACGGCAATCAGCTCTTGCCCGAGGTTGGCAATGTGGTTCTTGCCCGCGTCACTCGCCTC
ATGCCCAAGCAAGCCATTGTGGCCATTCAGCAGATTGGGGGCACCGTCCTGCACACCGAGTGGCAGGGCGTCATC
CGTGTACAGGATGTGAGGGCCACGGAAAAGGACAAGGTCAAGATTCAGGAATCATTCAAGCCCGGAGACATTGTC
AAGGCCCAGGTGGTGAGACTCGACGCCTTGGATTCCTGCCCACGACATGGCCAACTAGATGCTTGCTACTAACTC
TGTGTTTCCCCAGATTTCCTTGGGTGACCAGGCCAACTATTATCTATCGACAGCGTCAAACGAGCTGGGAGTCAT
CATGGCCATGAGCGAGGCTGGCAACGACATGGTCCCCATTAGCTGGAAGGAATTTATAGACCCCGAGACACGTCT
CAGCGAGCAGAGAAAGGTTGCAAAACCCAGCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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