© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|7477 |
| Gene name | |
| Location | Contig_878:6350..7521 |
| Strand | - |
| Gene length (bp) | 1171 |
| Transcript length (bp) | 780 |
| Coding sequence length (bp) | 780 |
| Protein length (aa) | 260 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04511 | DER1 | Der1-like family | 6.9E-28 | 12 | 206 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q8BNI4|DERL2_MOUSE | Derlin-2 OS=Mus musculus GN=Derl2 PE=1 SV=2 | 8 | 259 | 5.0E-18 |
| sp|Q5RC74|DERL2_PONAB | Derlin-2 OS=Pongo abelii GN=DERL2 PE=2 SV=1 | 8 | 259 | 8.0E-18 |
| sp|Q9GZP9|DERL2_HUMAN | Derlin-2 OS=Homo sapiens GN=DERL2 PE=1 SV=1 | 8 | 259 | 8.0E-18 |
| sp|Q96Q80|DERL3_HUMAN | Derlin-3 OS=Homo sapiens GN=DERL3 PE=1 SV=2 | 8 | 215 | 3.0E-14 |
| sp|Q0P5E4|DERL3_BOVIN | Derlin-3 OS=Bos taurus GN=DERL3 PE=2 SV=1 | 8 | 215 | 9.0E-14 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q8BNI4|DERL2_MOUSE | Derlin-2 OS=Mus musculus GN=Derl2 PE=1 SV=2 | 8 | 259 | 5.0E-18 |
| sp|Q5RC74|DERL2_PONAB | Derlin-2 OS=Pongo abelii GN=DERL2 PE=2 SV=1 | 8 | 259 | 8.0E-18 |
| sp|Q9GZP9|DERL2_HUMAN | Derlin-2 OS=Homo sapiens GN=DERL2 PE=1 SV=1 | 8 | 259 | 8.0E-18 |
| sp|Q96Q80|DERL3_HUMAN | Derlin-3 OS=Homo sapiens GN=DERL3 PE=1 SV=2 | 8 | 215 | 3.0E-14 |
| sp|Q0P5E4|DERL3_BOVIN | Derlin-3 OS=Bos taurus GN=DERL3 PE=2 SV=1 | 8 | 215 | 9.0E-14 |
| sp|Q9D8K3|DERL3_MOUSE | Derlin-3 OS=Mus musculus GN=Derl3 PE=1 SV=1 | 9 | 214 | 1.0E-13 |
| sp|Q8VZU9|DERL1_ARATH | Derlin-1 OS=Arabidopsis thaliana GN=DER1 PE=2 SV=1 | 7 | 213 | 2.0E-13 |
| sp|Q71SS4|DERL1_BOVIN | Derlin-1 OS=Bos taurus GN=DERL1 PE=2 SV=1 | 1 | 259 | 7.0E-12 |
| sp|Q4G2J5|DER12_MAIZE | Derlin-1.2 OS=Zea mays GN=DER1.2 PE=2 SV=1 | 7 | 243 | 9.0E-12 |
| sp|Q9VQ57|DERL1_DROME | Derlin-1 OS=Drosophila melanogaster GN=Der-1 PE=2 SV=1 | 9 | 217 | 4.0E-11 |
| sp|Q9BUN8|DERL1_HUMAN | Derlin-1 OS=Homo sapiens GN=DERL1 PE=1 SV=1 | 1 | 259 | 5.0E-11 |
| sp|Q99J56|DERL1_MOUSE | Derlin-1 OS=Mus musculus GN=Derl1 PE=1 SV=1 | 1 | 259 | 5.0E-11 |
| sp|Q5R9W3|DERL1_PONAB | Derlin-1 OS=Pongo abelii GN=DERL1 PE=2 SV=1 | 1 | 259 | 5.0E-11 |
| sp|Q4G2J6|DER11_MAIZE | Derlin-1.1 OS=Zea mays GN=DER1.1 PE=2 SV=2 | 7 | 243 | 2.0E-10 |
| sp|Q4G2J4|DER21_MAIZE | Derlin-2.1 OS=Zea mays GN=DER2.1 PE=2 SV=2 | 1 | 245 | 6.0E-10 |
| sp|Q4G2J3|DER22_MAIZE | Derlin-2.2 OS=Zea mays GN=DER2.2 PE=2 SV=1 | 1 | 245 | 1.0E-09 |
| sp|Q851X7|DERL2_ORYSJ | Derlin-2 OS=Oryza sativa subsp. japonica GN=DER2 PE=2 SV=1 | 1 | 245 | 5.0E-09 |
| sp|Q12743|DFM1_YEAST | DER1-like family member protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DFM1 PE=1 SV=1 | 7 | 259 | 2.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 23 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 20 | 42 | 22 |
| 2 | 54 | 76 | 22 |
| 3 | 101 | 123 | 22 |
| 4 | 143 | 165 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|7477 MADLSLDSYWRLPPLSRTVATAAFIISISVHLGLLPGSWFIFYPRLVFSFTPQLWRFVTAFLITGPSLGLLFDTY FVYSYLSQLEVGNPRFPRKEDLIWYLMFVGGTIMTINYLVGFGFVAFLQALILAMCYTVTQDQRGAKVNYMFITI PAQLAPFAMLLFNLLFPGGVSNMMLQIQGLVAAHLYDFLTRIWPEYGGGSNLIPTPHVVTRLVQAVGRVVGTAVA RTSGQTPSTGSSTGVSRGPLPESWRSRGPGHRLG* |
| Coding | >OphauG2|7477 ATGGCCGATCTCTCCTTGGATAGCTACTGGCGGCTGCCGCCGTTGTCCAGAACAGTAGCAACCGCTGCCTTTATC ATATCCATCTCGGTCCATCTAGGGCTGCTACCAGGCTCTTGGTTCATCTTCTATCCAAGACTGGTATTCTCCTTT ACGCCGCAGTTATGGCGCTTTGTGACTGCCTTTCTCATCACCGGCCCCTCTCTCGGCCTGCTCTTTGACACATAC TTTGTCTACTCGTATTTGAGCCAGCTCGAGGTTGGAAACCCAAGGTTCCCTCGCAAAGAAGACCTCATCTGGTAT CTCATGTTTGTTGGTGGAACTATCATGACCATCAACTACCTGGTTGGGTTCGGATTCGTTGCCTTTTTGCAGGCT CTGATCCTCGCAATGTGCTACACCGTGACACAGGACCAGAGAGGAGCCAAGGTCAACTATATGTTTATAACGATT CCCGCCCAGCTCGCTCCTTTCGCCATGCTCTTGTTCAACCTCTTATTTCCCGGAGGTGTCAGCAACATGATGCTC CAGATTCAAGGTCTTGTTGCTGCACACTTGTACGACTTCTTGACGAGGATCTGGCCTGAATATGGCGGCGGAAGC AATCTCATCCCAACACCTCATGTTGTTACTAGGCTGGTTCAAGCGGTGGGACGGGTCGTAGGCACCGCTGTTGCC CGTACCTCTGGACAGACGCCCTCAACAGGTTCTAGCACTGGTGTGTCCCGAGGACCTCTGCCAGAATCATGGCGG AGCAGAGGTCCTGGACACCGGTTGGGCTGA |
| Transcript | >OphauG2|7477 ATGGCCGATCTCTCCTTGGATAGCTACTGGCGGCTGCCGCCGTTGTCCAGAACAGTAGCAACCGCTGCCTTTATC ATATCCATCTCGGTCCATCTAGGGCTGCTACCAGGCTCTTGGTTCATCTTCTATCCAAGACTGGTATTCTCCTTT ACGCCGCAGTTATGGCGCTTTGTGACTGCCTTTCTCATCACCGGCCCCTCTCTCGGCCTGCTCTTTGACACATAC TTTGTCTACTCGTATTTGAGCCAGCTCGAGGTTGGAAACCCAAGGTTCCCTCGCAAAGAAGACCTCATCTGGTAT CTCATGTTTGTTGGTGGAACTATCATGACCATCAACTACCTGGTTGGGTTCGGATTCGTTGCCTTTTTGCAGGCT CTGATCCTCGCAATGTGCTACACCGTGACACAGGACCAGAGAGGAGCCAAGGTCAACTATATGTTTATAACGATT CCCGCCCAGCTCGCTCCTTTCGCCATGCTCTTGTTCAACCTCTTATTTCCCGGAGGTGTCAGCAACATGATGCTC CAGATTCAAGGTCTTGTTGCTGCACACTTGTACGACTTCTTGACGAGGATCTGGCCTGAATATGGCGGCGGAAGC AATCTCATCCCAACACCTCATGTTGTTACTAGGCTGGTTCAAGCGGTGGGACGGGTCGTAGGCACCGCTGTTGCC CGTACCTCTGGACAGACGCCCTCAACAGGTTCTAGCACTGGTGTGTCCCGAGGACCTCTGCCAGAATCATGGCGG AGCAGAGGTCCTGGACACCGGTTGGGCTGA |
| Gene | >OphauG2|7477 ATGGCCGATCTCTCCTTGGATAGCTACTGGCGGCTGCCGCCGTTGTCCAGGTGAGCAACAGGGAATCTTTGGGTC GCAAAAAACAGCTGGCTAACGCGTTCACACTGCAGAACAGTAGCAACCGCTGCCTTTATCATATCCATCTCGGTC CATCTAGGGCTGCTACCAGGCTCTTGGTTCATCTTCTATCCAAGACTGGTATTCTCCTTTACGCCGCAGTTATGG CGCTTTGTGACTGCCTTTCTCATCACCGGCCCCTCTCTCGGCCTGCTCTTTGACACATACTTTGTCTACTCGTAT TTGAGCCAGCTCGAGGTTGGAAACCCAAGGTTCCCTCGCAAAGAAGACCTCATCTGGTATCTCATGTTTGTTGGT GGAACTATCATGGTAAGCCACTATGCTCATGCTCTCTGCCCGTCCATGTTTGCCTTGAAGTTGCTCCGTCTGCGC TGCTCCTCATAAATCTGCCCGGATAGTGCATTTCCTCTACTGCTATCACGGTTCCTGGAACTGAGGAAGATTACC CCTGTACTTCGGTCCAGCCCATCATTCGCAATCCGGGATGGCCTGCGGTACAGGCATGGTGGGATGTCTCATGGA TGGCCCGTGTGATGCCTCATTCACTCGGGTGGTTTTTAAGCTCCCTACATCTTTAACGCCATATGCTTTTGCTTT ACGCATGCCGTAGCGGATATGTTGAAGCTGACACCAGCCTCAGACCATCAACTACCTGGTTGGGTTCGGATTCGT TGCCTTTTTGCAGGCTCTGATCCTCGCAATGTGCTACACCGTGACACAGGACCAGAGAGGAGCCAAGGTCAACTA TATGTTTATAACGATTCCCGCCCAGCTCGCTCCTTTCGCCATGCTCTTGTTCAACCTCTTATTTCCCGGAGGTGT CAGCAACATGATGCTCCAGATTCAAGGTCTTGTTGCTGCACACTTGTACGACTTCTTGACGAGGATCTGGCCTGA ATATGGCGGCGGAAGCAATCTCATCCCAACACCTCATGTTGTTACTAGGCTGGTTCAAGCGGTGGGACGGGTCGT AGGCACCGCTGTTGCCCGTACCTCTGGACAGACGCCCTCAACAGGTTCTAGCACTGGTGTGTCCCGAGGACCTCT GCCAGAATCATGGCGGAGCAGAGGTCCTGGACACCGGTTGGGCTGA |