© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|7315 |
| Gene name | |
| Location | Contig_84:612..1519 |
| Strand | - |
| Gene length (bp) | 907 |
| Transcript length (bp) | 777 |
| Coding sequence length (bp) | 777 |
| Protein length (aa) | 259 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01138 | RNase_PH | 3' exoribonuclease family, domain 1 | 1.0E-10 | 12 | 142 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P53256|RRP46_YEAST | Exosome complex component RRP46 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRP46 PE=1 SV=2 | 10 | 214 | 3.0E-25 |
| sp|O42894|RRP46_SCHPO | Exosome complex component rrp46 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp46 PE=3 SV=1 | 15 | 237 | 3.0E-16 |
| sp|Q9CRA8|EXOS5_MOUSE | Exosome complex component RRP46 OS=Mus musculus GN=Exosc5 PE=1 SV=1 | 3 | 199 | 6.0E-15 |
| sp|Q9NQT4|EXOS5_HUMAN | Exosome complex component RRP46 OS=Homo sapiens GN=EXOSC5 PE=1 SV=1 | 4 | 199 | 2.0E-13 |
| sp|Q9LX74|EXOS5_ARATH | Exosome complex exonuclease RRP46 homolog OS=Arabidopsis thaliana GN=RRP46 PE=2 SV=1 | 16 | 171 | 5.0E-10 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P53256|RRP46_YEAST | Exosome complex component RRP46 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRP46 PE=1 SV=2 | 10 | 214 | 3.0E-25 |
| sp|O42894|RRP46_SCHPO | Exosome complex component rrp46 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp46 PE=3 SV=1 | 15 | 237 | 3.0E-16 |
| sp|Q9CRA8|EXOS5_MOUSE | Exosome complex component RRP46 OS=Mus musculus GN=Exosc5 PE=1 SV=1 | 3 | 199 | 6.0E-15 |
| sp|Q9NQT4|EXOS5_HUMAN | Exosome complex component RRP46 OS=Homo sapiens GN=EXOSC5 PE=1 SV=1 | 4 | 199 | 2.0E-13 |
| sp|Q9LX74|EXOS5_ARATH | Exosome complex exonuclease RRP46 homolog OS=Arabidopsis thaliana GN=RRP46 PE=2 SV=1 | 16 | 171 | 5.0E-10 |
| sp|Q84T68|EXOS5_ORYSJ | Exosome complex exonuclease RRP46 homolog OS=Oryza sativa subsp. japonica GN=RRP46 PE=1 SV=2 | 18 | 210 | 3.0E-08 |
| sp|Q8PTT8|RRP41_METMA | Exosome complex component Rrp41 OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=rrp41 PE=3 SV=1 | 12 | 214 | 1.0E-07 |
| sp|Q17533|EXOS4_CAEEL | Putative exosome complex component RRP41 OS=Caenorhabditis elegans GN=exos-4.1 PE=3 SV=2 | 15 | 214 | 8.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 120 | 142 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|7315 MSTKQGVMSSPRAELSMLPKADGSGTFSYGGFSVTAAVNGPIEAAKRDESAFEAQVDVIVRPAAGVGGTAERQLE GIVQSALRQLITVGSFPRCMFQVTLQVLEMPENLYANTKVVQAQLNLAIIPALIHAAMIGLLLAAVPLKSIATAV TLAFGTRDGKVEMIVDPGARETAMAESVHVLGFTSDGELLMAESLGSFSVEQWEQVLEAGRRICCRDRDSGLDTV MAGDGLEGLESPSVKAFIRATLETQTLQDLYWK* |
| Coding | >OphauG2|7315 ATGTCGACAAAGCAGGGCGTGATGAGCTCGCCAAGGGCGGAGTTGTCGATGCTACCCAAGGCAGATGGGTCTGGG ACATTTTCGTACGGAGGCTTCAGCGTGACGGCAGCAGTCAACGGACCCATTGAAGCGGCGAAACGTGACGAGAGT GCGTTCGAGGCCCAGGTGGATGTGATTGTACGACCGGCGGCTGGAGTTGGAGGGACGGCGGAGCGACAGCTCGAG GGGATTGTACAGTCGGCTCTGCGACAGCTGATTACAGTGGGAAGCTTTCCGCGATGCATGTTCCAGGTGACGCTG CAGGTTCTCGAGATGCCGGAAAATCTGTACGCAAACACCAAGGTGGTGCAGGCCCAACTGAATTTGGCCATTATT CCGGCTCTGATACACGCTGCCATGATTGGACTACTTTTGGCAGCGGTGCCACTCAAGTCGATTGCAACGGCGGTG ACGCTGGCGTTTGGAACACGAGACGGCAAGGTGGAAATGATTGTCGACCCTGGAGCACGAGAAACGGCCATGGCA GAGTCGGTGCATGTGCTTGGCTTCACGTCAGATGGAGAGCTCTTGATGGCAGAAAGCTTGGGCTCCTTTTCGGTG GAGCAGTGGGAACAGGTGCTGGAGGCTGGGCGACGCATCTGCTGTCGCGACAGAGACTCGGGCTTGGACACGGTC ATGGCTGGCGACGGGCTTGAAGGGCTCGAGTCGCCAAGCGTCAAGGCCTTTATTCGAGCCACGCTTGAGACACAG ACTCTGCAAGATTTGTACTGGAAATGA |
| Transcript | >OphauG2|7315 ATGTCGACAAAGCAGGGCGTGATGAGCTCGCCAAGGGCGGAGTTGTCGATGCTACCCAAGGCAGATGGGTCTGGG ACATTTTCGTACGGAGGCTTCAGCGTGACGGCAGCAGTCAACGGACCCATTGAAGCGGCGAAACGTGACGAGAGT GCGTTCGAGGCCCAGGTGGATGTGATTGTACGACCGGCGGCTGGAGTTGGAGGGACGGCGGAGCGACAGCTCGAG GGGATTGTACAGTCGGCTCTGCGACAGCTGATTACAGTGGGAAGCTTTCCGCGATGCATGTTCCAGGTGACGCTG CAGGTTCTCGAGATGCCGGAAAATCTGTACGCAAACACCAAGGTGGTGCAGGCCCAACTGAATTTGGCCATTATT CCGGCTCTGATACACGCTGCCATGATTGGACTACTTTTGGCAGCGGTGCCACTCAAGTCGATTGCAACGGCGGTG ACGCTGGCGTTTGGAACACGAGACGGCAAGGTGGAAATGATTGTCGACCCTGGAGCACGAGAAACGGCCATGGCA GAGTCGGTGCATGTGCTTGGCTTCACGTCAGATGGAGAGCTCTTGATGGCAGAAAGCTTGGGCTCCTTTTCGGTG GAGCAGTGGGAACAGGTGCTGGAGGCTGGGCGACGCATCTGCTGTCGCGACAGAGACTCGGGCTTGGACACGGTC ATGGCTGGCGACGGGCTTGAAGGGCTCGAGTCGCCAAGCGTCAAGGCCTTTATTCGAGCCACGCTTGAGACACAG ACTCTGCAAGATTTGTACTGGAAATGA |
| Gene | >OphauG2|7315 ATGTCGACAAAGCAGGGCGTGATGAGCTCGCCAAGGGCGGAGTTGTCGATGCTACCCAAGGCAGATGGGTCTGGG ACATTTTCGTACGGAGGCTTCAGCGTGACGGCAGCAGTCAACGGACCCATTGAAGCGGCGAAACGTGACGAGAGT GCGTTCGAGGCCCAGGTGGATGTGATTGTACGACCGGCGGCTGGAGTTGGAGGTAGGAGACGGCAGGACATTGGT GTGTGGGAGAGGCCAAGTCTGACATGTCAATGAGCAGGGACGGCGGAGCGACAGCTCGAGGGGATTGTACAGTCG GCTCTGCGACAGCTGATTACAGTGGGAAGCTTTCCGCGATGCATGTTCCAGGTGACGCTGCAGGTTCTCGAGATG CCGGAAAATCTGTACGCAAACACCAAGGTGGTGCAGGCCCAACTGGTGAGGGCTAGGCAACATGTGTGAGTGGGA GATGGGAAAGGGGTGCATGGGCTAATGGGGATTGGAGCAGAATTTGGCCATTATTCCGGCTCTGATACACGCTGC CATGATTGGACTACTTTTGGCAGCGGTGCCACTCAAGTCGATTGCAACGGCGGTGACGCTGGCGTTTGGAACACG AGACGGCAAGGTGGAAATGATTGTCGACCCTGGAGCACGAGAAACGGCCATGGCAGAGTCGGTGCATGTGCTTGG CTTCACGTCAGATGGAGAGCTCTTGATGGCAGAAAGCTTGGGCTCCTTTTCGGTGGAGCAGTGGGAACAGGTGCT GGAGGCTGGGCGACGCATCTGCTGTCGCGACAGAGACTCGGGCTTGGACACGGTCATGGCTGGCGACGGGCTTGA AGGGCTCGAGTCGCCAAGCGTCAAGGCCTTTATTCGAGCCACGCTTGAGACACAGACTCTGCAAGATTTGTACTG GAAATGA |