© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|7284 |
| Gene name | |
| Location | Contig_83:30776..32779 |
| Strand | + |
| Gene length (bp) | 2003 |
| Transcript length (bp) | 1779 |
| Coding sequence length (bp) | 1779 |
| Protein length (aa) | 593 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03372 | Exo_endo_phos | Endonuclease/Exonuclease/phosphatase family | 1.6E-12 | 52 | 343 |
| PF06839 | zf-GRF | GRF zinc finger | 4.1E-06 | 533 | 563 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P87175|APN2_SCHPO | DNA-(apurinic or apyrimidinic site) lyase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apn2 PE=1 SV=1 | 21 | 587 | 4.0E-81 |
| sp|P38207|APN2_YEAST | DNA-(apurinic or apyrimidinic site) lyase 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=APN2 PE=1 SV=1 | 27 | 583 | 2.0E-57 |
| sp|Q5E9N9|APEX2_BOVIN | DNA-(apurinic or apyrimidinic site) lyase 2 OS=Bos taurus GN=APEX2 PE=2 SV=1 | 27 | 584 | 5.0E-54 |
| sp|Q9UBZ4|APEX2_HUMAN | DNA-(apurinic or apyrimidinic site) lyase 2 OS=Homo sapiens GN=APEX2 PE=1 SV=1 | 27 | 584 | 7.0E-52 |
| sp|Q68G58|APEX2_MOUSE | DNA-(apurinic or apyrimidinic site) lyase 2 OS=Mus musculus GN=Apex2 PE=1 SV=1 | 27 | 584 | 2.0E-44 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P87175|APN2_SCHPO | DNA-(apurinic or apyrimidinic site) lyase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apn2 PE=1 SV=1 | 21 | 587 | 4.0E-81 |
| sp|P38207|APN2_YEAST | DNA-(apurinic or apyrimidinic site) lyase 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=APN2 PE=1 SV=1 | 27 | 583 | 2.0E-57 |
| sp|Q5E9N9|APEX2_BOVIN | DNA-(apurinic or apyrimidinic site) lyase 2 OS=Bos taurus GN=APEX2 PE=2 SV=1 | 27 | 584 | 5.0E-54 |
| sp|Q9UBZ4|APEX2_HUMAN | DNA-(apurinic or apyrimidinic site) lyase 2 OS=Homo sapiens GN=APEX2 PE=1 SV=1 | 27 | 584 | 7.0E-52 |
| sp|Q68G58|APEX2_MOUSE | DNA-(apurinic or apyrimidinic site) lyase 2 OS=Mus musculus GN=Apex2 PE=1 SV=1 | 27 | 584 | 2.0E-44 |
| sp|F4JNY0|APE2_ARATH | DNA-(apurinic or apyrimidinic site) lyase 2 OS=Arabidopsis thaliana GN=APE2 PE=1 SV=1 | 59 | 352 | 9.0E-24 |
| sp|P28352|APEX1_MOUSE | DNA-(apurinic or apyrimidinic site) lyase OS=Mus musculus GN=Apex1 PE=1 SV=2 | 66 | 351 | 4.0E-20 |
| sp|A0MTA1|APEX1_DANRE | DNA-(apurinic or apyrimidinic site) lyase OS=Danio rerio GN=apex1 PE=1 SV=1 | 66 | 351 | 6.0E-20 |
| sp|A1YES6|APEX1_GORGO | DNA-(apurinic or apyrimidinic site) lyase OS=Gorilla gorilla gorilla GN=APEX1 PE=3 SV=1 | 66 | 351 | 6.0E-20 |
| sp|A1YFZ3|APEX1_PANPA | DNA-(apurinic or apyrimidinic site) lyase OS=Pan paniscus GN=APEX1 PE=3 SV=1 | 66 | 351 | 1.0E-19 |
| sp|P43138|APEX1_RAT | DNA-(apurinic or apyrimidinic site) lyase OS=Rattus norvegicus GN=Apex1 PE=1 SV=2 | 66 | 351 | 1.0E-19 |
| sp|A2T6Y4|APEX1_PANTR | DNA-(apurinic or apyrimidinic site) lyase OS=Pan troglodytes GN=APEX1 PE=3 SV=1 | 66 | 351 | 1.0E-19 |
| sp|P27695|APEX1_HUMAN | DNA-(apurinic or apyrimidinic site) lyase OS=Homo sapiens GN=APEX1 PE=1 SV=2 | 66 | 351 | 4.0E-19 |
| sp|A2T7I6|APEX1_PONPY | DNA-(apurinic or apyrimidinic site) lyase OS=Pongo pygmaeus GN=APEX1 PE=3 SV=1 | 66 | 351 | 1.0E-18 |
| sp|P45951|ARP_ARATH | DNA-(apurinic or apyrimidinic site) lyase, chloroplastic OS=Arabidopsis thaliana GN=ARP PE=1 SV=2 | 13 | 350 | 3.0E-18 |
| sp|P23196|APEX1_BOVIN | DNA-(apurinic or apyrimidinic site) lyase OS=Bos taurus GN=APEX1 PE=1 SV=2 | 66 | 351 | 3.0E-18 |
| sp|P37454|EXOA_BACSU | Exodeoxyribonuclease OS=Bacillus subtilis (strain 168) GN=exoA PE=1 SV=1 | 64 | 346 | 1.0E-17 |
| sp|P51173|APEA_DICDI | DNA-(apurinic or apyrimidinic site) lyase OS=Dictyostelium discoideum GN=apeA PE=2 SV=2 | 66 | 350 | 2.0E-10 |
| sp|P0A2X4|EXOA_STRR6 | Exodeoxyribonuclease OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=exoA PE=3 SV=1 | 51 | 346 | 5.0E-09 |
| sp|P0A2X3|EXOA_STRPN | Exodeoxyribonuclease OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN=exoA PE=3 SV=1 | 51 | 346 | 5.0E-09 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008270 | zinc ion binding | Yes |
| GO:0003824 | catalytic activity | Yes |
| GO:0003674 | molecular_function | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0046872 | metal ion binding | No |
| GO:0043169 | cation binding | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| Zinc finger, GRF-type |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|7284 MLVLVRVRVLMLEPTPVNQPLTWRQPSVNGIRNPFSYQPWREKRTFQTSPRLPRQIKAMFDILEADIVVLQETKI QRKDLEDDMILVPGWDVYLTLPRHKKGYSGVAIYTRNQTCAPIRAEEGLLGLLTAPKSSIKFRHLPKHQQIGGYP SPDQLSPHVDELDLDSEGRCLLVEFPAFVLMGVYCPAIRDESRHNFRISFLQALDARVRNLLDAGKQVVLAGDIN IVRSQLDSTNLQESLRKQAMTMDEWMSLPARRIFNQLVFPDASSPRAHQPAQGPSPVLWDLCRCFHPDRQAMNTC WDTKRNTRPANNGSRIDYILCTDALKPWFTEADIQPGLMGSDHCPVFAVMADNLAVDGASLSLPDLVNPADMFSH GVRIRPWASSDCLPLSARLIPEFDRRQNIRDMFKKSAEHPFARQASQPKRLRSSSPPQPLTLPSKRSKPLTPLDS SNKTKTKTPAGQTTLQAFLAKPAPPASCPRNLHKPAADTQSLTPATPSATHVPPEPAASPERVFDPIEAKESWSR LLGKRIAPRCQHGEPCISLVTKKPGINCGRSFYICPRPLGPSGDKEKDSEWRCSTFIWSSDWNKTTS* |
| Coding | >OphauG2|7284 ATGCTCGTGCTCGTGCGCGTGCGCGTGCTCATGCTCGAGCCAACCCCCGTCAACCAGCCGCTGACATGGCGCCAA CCCTCAGTCAATGGCATCAGAAACCCCTTTAGCTATCAGCCGTGGAGGGAAAAGCGCACATTTCAGACGAGTCCT CGCTTACCACGGCAAATAAAGGCCATGTTCGACATTCTCGAGGCAGACATTGTCGTCCTGCAAGAGACCAAGATC CAGCGCAAAGACCTCGAGGATGACATGATTCTCGTCCCGGGCTGGGACGTCTATCTTACTCTCCCCAGGCACAAA AAGGGCTATTCGGGCGTCGCCATCTACACGCGCAACCAGACCTGCGCCCCAATACGAGCCGAAGAAGGCCTCCTC GGCCTCCTCACCGCCCCCAAGTCGTCCATCAAGTTTCGCCACTTGCCCAAGCACCAGCAGATTGGCGGATACCCG AGCCCCGACCAACTCTCGCCCCACGTCGACGAGCTTGACCTCGACTCGGAAGGCCGCTGCCTGCTTGTCGAGTTT CCCGCCTTTGTTCTCATGGGCGTCTATTGCCCGGCAATCCGCGATGAGTCGCGCCACAACTTTCGCATCTCCTTT CTCCAGGCCCTCGACGCCCGCGTCCGCAATCTCCTCGACGCAGGCAAGCAAGTTGTCCTGGCCGGAGACATCAAC ATTGTTCGCTCCCAACTCGACTCGACAAACTTGCAAGAGTCGCTGCGCAAGCAGGCCATGACCATGGACGAGTGG ATGTCTCTGCCCGCCAGGCGCATCTTCAACCAGCTTGTCTTTCCCGACGCCTCCTCGCCTCGGGCTCACCAGCCA GCACAAGGGCCCAGCCCCGTCTTGTGGGATTTGTGTCGCTGCTTCCATCCAGACCGCCAGGCCATGAATACCTGC TGGGACACCAAGCGCAACACACGCCCAGCCAACAATGGCAGCCGCATCGACTACATCCTCTGCACCGACGCGCTC AAGCCCTGGTTCACCGAGGCTGACATCCAGCCGGGCCTCATGGGCTCCGATCACTGTCCCGTGTTTGCCGTCATG GCTGACAACCTTGCTGTCGACGGCGCCAGCCTTTCTCTGCCCGACCTGGTCAACCCTGCCGACATGTTTAGCCAC GGCGTCCGCATCAGGCCCTGGGCTTCCAGTGACTGTCTGCCTCTGTCGGCCAGGCTGATTCCCGAGTTTGACCGC CGCCAGAACATCCGCGACATGTTCAAAAAGTCTGCTGAGCATCCCTTTGCTCGTCAAGCCTCACAGCCCAAGCGA CTACGCTCCTCCTCGCCGCCACAGCCTCTCACTCTGCCCTCGAAGCGATCCAAGCCTCTGACCCCGCTCGACTCA TCCAACAAGACAAAGACAAAGACGCCTGCTGGCCAAACGACGCTCCAGGCCTTTCTTGCCAAGCCCGCGCCACCT GCTTCTTGTCCCCGAAATTTGCACAAGCCCGCAGCCGATACCCAGAGTCTCACACCAGCCACGCCATCTGCCACC CATGTGCCCCCAGAGCCTGCTGCCTCGCCAGAACGTGTCTTTGACCCGATAGAGGCAAAAGAGTCATGGTCAAGG CTCTTGGGCAAGCGCATCGCTCCCCGCTGCCAACACGGCGAGCCCTGCATCAGTCTCGTCACCAAGAAGCCCGGC ATCAACTGCGGCCGCTCTTTTTACATTTGCCCTCGTCCGCTTGGGCCGTCGGGCGACAAGGAGAAGGACTCCGAG TGGCGTTGTAGCACCTTTATCTGGAGTAGTGACTGGAACAAGACGACCTCATAA |
| Transcript | >OphauG2|7284 ATGCTCGTGCTCGTGCGCGTGCGCGTGCTCATGCTCGAGCCAACCCCCGTCAACCAGCCGCTGACATGGCGCCAA CCCTCAGTCAATGGCATCAGAAACCCCTTTAGCTATCAGCCGTGGAGGGAAAAGCGCACATTTCAGACGAGTCCT CGCTTACCACGGCAAATAAAGGCCATGTTCGACATTCTCGAGGCAGACATTGTCGTCCTGCAAGAGACCAAGATC CAGCGCAAAGACCTCGAGGATGACATGATTCTCGTCCCGGGCTGGGACGTCTATCTTACTCTCCCCAGGCACAAA AAGGGCTATTCGGGCGTCGCCATCTACACGCGCAACCAGACCTGCGCCCCAATACGAGCCGAAGAAGGCCTCCTC GGCCTCCTCACCGCCCCCAAGTCGTCCATCAAGTTTCGCCACTTGCCCAAGCACCAGCAGATTGGCGGATACCCG AGCCCCGACCAACTCTCGCCCCACGTCGACGAGCTTGACCTCGACTCGGAAGGCCGCTGCCTGCTTGTCGAGTTT CCCGCCTTTGTTCTCATGGGCGTCTATTGCCCGGCAATCCGCGATGAGTCGCGCCACAACTTTCGCATCTCCTTT CTCCAGGCCCTCGACGCCCGCGTCCGCAATCTCCTCGACGCAGGCAAGCAAGTTGTCCTGGCCGGAGACATCAAC ATTGTTCGCTCCCAACTCGACTCGACAAACTTGCAAGAGTCGCTGCGCAAGCAGGCCATGACCATGGACGAGTGG ATGTCTCTGCCCGCCAGGCGCATCTTCAACCAGCTTGTCTTTCCCGACGCCTCCTCGCCTCGGGCTCACCAGCCA GCACAAGGGCCCAGCCCCGTCTTGTGGGATTTGTGTCGCTGCTTCCATCCAGACCGCCAGGCCATGAATACCTGC TGGGACACCAAGCGCAACACACGCCCAGCCAACAATGGCAGCCGCATCGACTACATCCTCTGCACCGACGCGCTC AAGCCCTGGTTCACCGAGGCTGACATCCAGCCGGGCCTCATGGGCTCCGATCACTGTCCCGTGTTTGCCGTCATG GCTGACAACCTTGCTGTCGACGGCGCCAGCCTTTCTCTGCCCGACCTGGTCAACCCTGCCGACATGTTTAGCCAC GGCGTCCGCATCAGGCCCTGGGCTTCCAGTGACTGTCTGCCTCTGTCGGCCAGGCTGATTCCCGAGTTTGACCGC CGCCAGAACATCCGCGACATGTTCAAAAAGTCTGCTGAGCATCCCTTTGCTCGTCAAGCCTCACAGCCCAAGCGA CTACGCTCCTCCTCGCCGCCACAGCCTCTCACTCTGCCCTCGAAGCGATCCAAGCCTCTGACCCCGCTCGACTCA TCCAACAAGACAAAGACAAAGACGCCTGCTGGCCAAACGACGCTCCAGGCCTTTCTTGCCAAGCCCGCGCCACCT GCTTCTTGTCCCCGAAATTTGCACAAGCCCGCAGCCGATACCCAGAGTCTCACACCAGCCACGCCATCTGCCACC CATGTGCCCCCAGAGCCTGCTGCCTCGCCAGAACGTGTCTTTGACCCGATAGAGGCAAAAGAGTCATGGTCAAGG CTCTTGGGCAAGCGCATCGCTCCCCGCTGCCAACACGGCGAGCCCTGCATCAGTCTCGTCACCAAGAAGCCCGGC ATCAACTGCGGCCGCTCTTTTTACATTTGCCCTCGTCCGCTTGGGCCGTCGGGCGACAAGGAGAAGGACTCCGAG TGGCGTTGTAGCACCTTTATCTGGAGTAGTGACTGGAACAAGACGACCTCATAA |
| Gene | >OphauG2|7284 ATGCTCGTGCTCGTGCGCGTGCGCGTGCTCATGCTCGAGCCAACCCCCGTCAACCAGCCGCTGACATGGCGCCAA CCCTCAGTCAATGGCATCAGAAACCCCTTTAGCTATCAGCCGTGGAGGGAAAAGCGCACATTTCAGGTAAGCCCA GAGACAACTCAACCCAAGTCAACACACCCCCTTGCTGCGCCCCCCAGACGAGTCCTCGCTTACCACGGCAAATAA AGGCCATGTTCGACATTCTCGAGGCAGACATTGTCGTCCTGCAAGAGACCAAGATCCAGCGCAAAGACCTCGAGG ATGACATGATTCTCGTCCCGGGCTGGGACGTCTATCTTACTCTCCCCAGGCACAAAAAGGGTAACAGTCTTGGCT GCCACGAGTCGCAAGCCCAGCCAGACTAACCTTGGCCCGCTCGTCTTGCTTGGCCTCTCCCAGGCTATTCGGGCG TCGCCATCTACACGCGCAACCAGACCTGCGCCCCAATACGAGCCGAAGAAGGCCTCCTCGGCCTCCTCACCGCCC CCAAGTCGTCCATCAAGTTTCGCCACTTGCCCAAGCACCAGCAGATTGGCGGATACCCGAGCCCCGACCAACTCT CGCCCCACGTCGACGAGCTTGACCTCGACTCGGAAGGCCGCTGCCTGCTTGTCGAGTTTCCCGCCTTTGTTCTCA TGGGCGTCTATTGCCCGGCAATCCGCGATGAGTCGCGCCACAACTTTCGCATCTCCTTTCTCCAGGCCCTCGACG CCCGCGTCCGCAATCTCCTCGACGCAGGCAAGCAAGTTGTCCTGGCCGGAGACATCAACATTGTTCGCTCCCAAC TCGACTCGACAAACTTGCAAGAGTCGCTGCGCAAGCAGGCCATGACCATGGACGAGTGGATGTCTCTGCCCGCCA GGCGCATCTTCAACCAGCTTGTCTTTCCCGACGCCTCCTCGCCTCGGGCTCACCAGCCAGCACAAGGGCCCAGCC CCGTCTTGTGGGATTTGTGTCGCTGCTTCCATCCAGACCGCCAGGCCATGAATACCTGCTGGGACACCAAGCGCA ACACACGCCCAGCCAACAATGGCAGCCGCATCGACTACATCCTCTGCACCGACGCGCTCAAGCCCTGGTTCACCG AGGCTGACATCCAGCCGGGCCTCATGGGCTCCGATCACTGTCCCGTGTTTGCCGTCATGGCTGACAACCTTGCTG TCGACGGCGCCAGCCTTTCTCTGCCCGACCTGGTCAACCCTGCCGACATGTTTAGCCACGGCGTCCGCATCAGGC CCTGGGCTTCCAGTGACTGTCTGCCTCTGTCGGCCAGGCTGATTCCCGAGTTTGACCGCCGCCAGAACATCCGCG ACATGTTCAAAAAGTCTGCTGAGCATCCCTTTGCTCGTCAAGCCTCACAGCCCAAGCGACTACGCTCCTCCTCGC CGCCACAGCCTCTCACTCTGCCCTCGAAGCGATCCAAGCCTCTGACCCCGCTCGACTCATCCAACAAGACAAAGA CAAAGACGCCTGCTGGCCAAACGACGCTCCAGGCCTTTCTTGCCAAGCCCGCGCCACCTGCTTCTTGTCCCCGAA ATTTGCACAAGCCCGCAGCCGATACCCAGAGTCTCACACCAGCCACGCCATCTGCCACCCATGTGCCCCCAGAGC CTGCTGCCTCGCCAGAACGTGTCTTTGACCCGATAGAGGCAAAAGAGTCATGGTCAAGGCTCTTGGGCAAGCGCA TCGCTCCCCGCTGCCAACACGGCGAGCCCTGCATCAGTCTCGTCACCAAGAAGCCCGGCATCAACTGCGGTCAGT CAGCCCCTTGCTCGTAGCACCGACACAAGGTCAAGGCTGCAATCATACAAGAAAGCTGTCTGCTGACATCAAGTC TCATCCCAGGCCGCTCTTTTTACATTTGCCCTCGTCCGCTTGGGCCGTCGGGCGACAAGGAGAAGGACTCCGAGT GGCGTTGTAGCACCTTTATCTGGAGTAGTGACTGGAACAAGACGACCTCATAA |