Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauG2|7284
Gene name
LocationContig_83:30776..32779
Strand+
Gene length (bp)2003
Transcript length (bp)1779
Coding sequence length (bp)1779
Protein length (aa) 593

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03372 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 1.6E-12 52 343
PF06839 zf-GRF GRF zinc finger 4.1E-06 533 563

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|P87175|APN2_SCHPO DNA-(apurinic or apyrimidinic site) lyase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apn2 PE=1 SV=1 21 587 4.0E-81
sp|P38207|APN2_YEAST DNA-(apurinic or apyrimidinic site) lyase 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=APN2 PE=1 SV=1 27 583 2.0E-57
sp|Q5E9N9|APEX2_BOVIN DNA-(apurinic or apyrimidinic site) lyase 2 OS=Bos taurus GN=APEX2 PE=2 SV=1 27 584 5.0E-54
sp|Q9UBZ4|APEX2_HUMAN DNA-(apurinic or apyrimidinic site) lyase 2 OS=Homo sapiens GN=APEX2 PE=1 SV=1 27 584 7.0E-52
sp|Q68G58|APEX2_MOUSE DNA-(apurinic or apyrimidinic site) lyase 2 OS=Mus musculus GN=Apex2 PE=1 SV=1 27 584 2.0E-44
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|P87175|APN2_SCHPO DNA-(apurinic or apyrimidinic site) lyase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apn2 PE=1 SV=1 21 587 4.0E-81
sp|P38207|APN2_YEAST DNA-(apurinic or apyrimidinic site) lyase 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=APN2 PE=1 SV=1 27 583 2.0E-57
sp|Q5E9N9|APEX2_BOVIN DNA-(apurinic or apyrimidinic site) lyase 2 OS=Bos taurus GN=APEX2 PE=2 SV=1 27 584 5.0E-54
sp|Q9UBZ4|APEX2_HUMAN DNA-(apurinic or apyrimidinic site) lyase 2 OS=Homo sapiens GN=APEX2 PE=1 SV=1 27 584 7.0E-52
sp|Q68G58|APEX2_MOUSE DNA-(apurinic or apyrimidinic site) lyase 2 OS=Mus musculus GN=Apex2 PE=1 SV=1 27 584 2.0E-44
sp|F4JNY0|APE2_ARATH DNA-(apurinic or apyrimidinic site) lyase 2 OS=Arabidopsis thaliana GN=APE2 PE=1 SV=1 59 352 9.0E-24
sp|P28352|APEX1_MOUSE DNA-(apurinic or apyrimidinic site) lyase OS=Mus musculus GN=Apex1 PE=1 SV=2 66 351 4.0E-20
sp|A0MTA1|APEX1_DANRE DNA-(apurinic or apyrimidinic site) lyase OS=Danio rerio GN=apex1 PE=1 SV=1 66 351 6.0E-20
sp|A1YES6|APEX1_GORGO DNA-(apurinic or apyrimidinic site) lyase OS=Gorilla gorilla gorilla GN=APEX1 PE=3 SV=1 66 351 6.0E-20
sp|A1YFZ3|APEX1_PANPA DNA-(apurinic or apyrimidinic site) lyase OS=Pan paniscus GN=APEX1 PE=3 SV=1 66 351 1.0E-19
sp|P43138|APEX1_RAT DNA-(apurinic or apyrimidinic site) lyase OS=Rattus norvegicus GN=Apex1 PE=1 SV=2 66 351 1.0E-19
sp|A2T6Y4|APEX1_PANTR DNA-(apurinic or apyrimidinic site) lyase OS=Pan troglodytes GN=APEX1 PE=3 SV=1 66 351 1.0E-19
sp|P27695|APEX1_HUMAN DNA-(apurinic or apyrimidinic site) lyase OS=Homo sapiens GN=APEX1 PE=1 SV=2 66 351 4.0E-19
sp|A2T7I6|APEX1_PONPY DNA-(apurinic or apyrimidinic site) lyase OS=Pongo pygmaeus GN=APEX1 PE=3 SV=1 66 351 1.0E-18
sp|P45951|ARP_ARATH DNA-(apurinic or apyrimidinic site) lyase, chloroplastic OS=Arabidopsis thaliana GN=ARP PE=1 SV=2 13 350 3.0E-18
sp|P23196|APEX1_BOVIN DNA-(apurinic or apyrimidinic site) lyase OS=Bos taurus GN=APEX1 PE=1 SV=2 66 351 3.0E-18
sp|P37454|EXOA_BACSU Exodeoxyribonuclease OS=Bacillus subtilis (strain 168) GN=exoA PE=1 SV=1 64 346 1.0E-17
sp|P51173|APEA_DICDI DNA-(apurinic or apyrimidinic site) lyase OS=Dictyostelium discoideum GN=apeA PE=2 SV=2 66 350 2.0E-10
sp|P0A2X4|EXOA_STRR6 Exodeoxyribonuclease OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=exoA PE=3 SV=1 51 346 5.0E-09
sp|P0A2X3|EXOA_STRPN Exodeoxyribonuclease OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN=exoA PE=3 SV=1 51 346 5.0E-09
[Show less]

GO

GO Term Description Terminal node
GO:0008270 zinc ion binding Yes
GO:0003824 catalytic activity Yes
GO:0003674 molecular_function No
GO:0046914 transition metal ion binding No
GO:0046872 metal ion binding No
GO:0043169 cation binding No
GO:0005488 binding No
GO:0043167 ion binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 21 0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
Zinc finger, GRF-type

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauG2|7284
MLVLVRVRVLMLEPTPVNQPLTWRQPSVNGIRNPFSYQPWREKRTFQTSPRLPRQIKAMFDILEADIVVLQETKI
QRKDLEDDMILVPGWDVYLTLPRHKKGYSGVAIYTRNQTCAPIRAEEGLLGLLTAPKSSIKFRHLPKHQQIGGYP
SPDQLSPHVDELDLDSEGRCLLVEFPAFVLMGVYCPAIRDESRHNFRISFLQALDARVRNLLDAGKQVVLAGDIN
IVRSQLDSTNLQESLRKQAMTMDEWMSLPARRIFNQLVFPDASSPRAHQPAQGPSPVLWDLCRCFHPDRQAMNTC
WDTKRNTRPANNGSRIDYILCTDALKPWFTEADIQPGLMGSDHCPVFAVMADNLAVDGASLSLPDLVNPADMFSH
GVRIRPWASSDCLPLSARLIPEFDRRQNIRDMFKKSAEHPFARQASQPKRLRSSSPPQPLTLPSKRSKPLTPLDS
SNKTKTKTPAGQTTLQAFLAKPAPPASCPRNLHKPAADTQSLTPATPSATHVPPEPAASPERVFDPIEAKESWSR
LLGKRIAPRCQHGEPCISLVTKKPGINCGRSFYICPRPLGPSGDKEKDSEWRCSTFIWSSDWNKTTS*
Coding >OphauG2|7284
ATGCTCGTGCTCGTGCGCGTGCGCGTGCTCATGCTCGAGCCAACCCCCGTCAACCAGCCGCTGACATGGCGCCAA
CCCTCAGTCAATGGCATCAGAAACCCCTTTAGCTATCAGCCGTGGAGGGAAAAGCGCACATTTCAGACGAGTCCT
CGCTTACCACGGCAAATAAAGGCCATGTTCGACATTCTCGAGGCAGACATTGTCGTCCTGCAAGAGACCAAGATC
CAGCGCAAAGACCTCGAGGATGACATGATTCTCGTCCCGGGCTGGGACGTCTATCTTACTCTCCCCAGGCACAAA
AAGGGCTATTCGGGCGTCGCCATCTACACGCGCAACCAGACCTGCGCCCCAATACGAGCCGAAGAAGGCCTCCTC
GGCCTCCTCACCGCCCCCAAGTCGTCCATCAAGTTTCGCCACTTGCCCAAGCACCAGCAGATTGGCGGATACCCG
AGCCCCGACCAACTCTCGCCCCACGTCGACGAGCTTGACCTCGACTCGGAAGGCCGCTGCCTGCTTGTCGAGTTT
CCCGCCTTTGTTCTCATGGGCGTCTATTGCCCGGCAATCCGCGATGAGTCGCGCCACAACTTTCGCATCTCCTTT
CTCCAGGCCCTCGACGCCCGCGTCCGCAATCTCCTCGACGCAGGCAAGCAAGTTGTCCTGGCCGGAGACATCAAC
ATTGTTCGCTCCCAACTCGACTCGACAAACTTGCAAGAGTCGCTGCGCAAGCAGGCCATGACCATGGACGAGTGG
ATGTCTCTGCCCGCCAGGCGCATCTTCAACCAGCTTGTCTTTCCCGACGCCTCCTCGCCTCGGGCTCACCAGCCA
GCACAAGGGCCCAGCCCCGTCTTGTGGGATTTGTGTCGCTGCTTCCATCCAGACCGCCAGGCCATGAATACCTGC
TGGGACACCAAGCGCAACACACGCCCAGCCAACAATGGCAGCCGCATCGACTACATCCTCTGCACCGACGCGCTC
AAGCCCTGGTTCACCGAGGCTGACATCCAGCCGGGCCTCATGGGCTCCGATCACTGTCCCGTGTTTGCCGTCATG
GCTGACAACCTTGCTGTCGACGGCGCCAGCCTTTCTCTGCCCGACCTGGTCAACCCTGCCGACATGTTTAGCCAC
GGCGTCCGCATCAGGCCCTGGGCTTCCAGTGACTGTCTGCCTCTGTCGGCCAGGCTGATTCCCGAGTTTGACCGC
CGCCAGAACATCCGCGACATGTTCAAAAAGTCTGCTGAGCATCCCTTTGCTCGTCAAGCCTCACAGCCCAAGCGA
CTACGCTCCTCCTCGCCGCCACAGCCTCTCACTCTGCCCTCGAAGCGATCCAAGCCTCTGACCCCGCTCGACTCA
TCCAACAAGACAAAGACAAAGACGCCTGCTGGCCAAACGACGCTCCAGGCCTTTCTTGCCAAGCCCGCGCCACCT
GCTTCTTGTCCCCGAAATTTGCACAAGCCCGCAGCCGATACCCAGAGTCTCACACCAGCCACGCCATCTGCCACC
CATGTGCCCCCAGAGCCTGCTGCCTCGCCAGAACGTGTCTTTGACCCGATAGAGGCAAAAGAGTCATGGTCAAGG
CTCTTGGGCAAGCGCATCGCTCCCCGCTGCCAACACGGCGAGCCCTGCATCAGTCTCGTCACCAAGAAGCCCGGC
ATCAACTGCGGCCGCTCTTTTTACATTTGCCCTCGTCCGCTTGGGCCGTCGGGCGACAAGGAGAAGGACTCCGAG
TGGCGTTGTAGCACCTTTATCTGGAGTAGTGACTGGAACAAGACGACCTCATAA
Transcript >OphauG2|7284
ATGCTCGTGCTCGTGCGCGTGCGCGTGCTCATGCTCGAGCCAACCCCCGTCAACCAGCCGCTGACATGGCGCCAA
CCCTCAGTCAATGGCATCAGAAACCCCTTTAGCTATCAGCCGTGGAGGGAAAAGCGCACATTTCAGACGAGTCCT
CGCTTACCACGGCAAATAAAGGCCATGTTCGACATTCTCGAGGCAGACATTGTCGTCCTGCAAGAGACCAAGATC
CAGCGCAAAGACCTCGAGGATGACATGATTCTCGTCCCGGGCTGGGACGTCTATCTTACTCTCCCCAGGCACAAA
AAGGGCTATTCGGGCGTCGCCATCTACACGCGCAACCAGACCTGCGCCCCAATACGAGCCGAAGAAGGCCTCCTC
GGCCTCCTCACCGCCCCCAAGTCGTCCATCAAGTTTCGCCACTTGCCCAAGCACCAGCAGATTGGCGGATACCCG
AGCCCCGACCAACTCTCGCCCCACGTCGACGAGCTTGACCTCGACTCGGAAGGCCGCTGCCTGCTTGTCGAGTTT
CCCGCCTTTGTTCTCATGGGCGTCTATTGCCCGGCAATCCGCGATGAGTCGCGCCACAACTTTCGCATCTCCTTT
CTCCAGGCCCTCGACGCCCGCGTCCGCAATCTCCTCGACGCAGGCAAGCAAGTTGTCCTGGCCGGAGACATCAAC
ATTGTTCGCTCCCAACTCGACTCGACAAACTTGCAAGAGTCGCTGCGCAAGCAGGCCATGACCATGGACGAGTGG
ATGTCTCTGCCCGCCAGGCGCATCTTCAACCAGCTTGTCTTTCCCGACGCCTCCTCGCCTCGGGCTCACCAGCCA
GCACAAGGGCCCAGCCCCGTCTTGTGGGATTTGTGTCGCTGCTTCCATCCAGACCGCCAGGCCATGAATACCTGC
TGGGACACCAAGCGCAACACACGCCCAGCCAACAATGGCAGCCGCATCGACTACATCCTCTGCACCGACGCGCTC
AAGCCCTGGTTCACCGAGGCTGACATCCAGCCGGGCCTCATGGGCTCCGATCACTGTCCCGTGTTTGCCGTCATG
GCTGACAACCTTGCTGTCGACGGCGCCAGCCTTTCTCTGCCCGACCTGGTCAACCCTGCCGACATGTTTAGCCAC
GGCGTCCGCATCAGGCCCTGGGCTTCCAGTGACTGTCTGCCTCTGTCGGCCAGGCTGATTCCCGAGTTTGACCGC
CGCCAGAACATCCGCGACATGTTCAAAAAGTCTGCTGAGCATCCCTTTGCTCGTCAAGCCTCACAGCCCAAGCGA
CTACGCTCCTCCTCGCCGCCACAGCCTCTCACTCTGCCCTCGAAGCGATCCAAGCCTCTGACCCCGCTCGACTCA
TCCAACAAGACAAAGACAAAGACGCCTGCTGGCCAAACGACGCTCCAGGCCTTTCTTGCCAAGCCCGCGCCACCT
GCTTCTTGTCCCCGAAATTTGCACAAGCCCGCAGCCGATACCCAGAGTCTCACACCAGCCACGCCATCTGCCACC
CATGTGCCCCCAGAGCCTGCTGCCTCGCCAGAACGTGTCTTTGACCCGATAGAGGCAAAAGAGTCATGGTCAAGG
CTCTTGGGCAAGCGCATCGCTCCCCGCTGCCAACACGGCGAGCCCTGCATCAGTCTCGTCACCAAGAAGCCCGGC
ATCAACTGCGGCCGCTCTTTTTACATTTGCCCTCGTCCGCTTGGGCCGTCGGGCGACAAGGAGAAGGACTCCGAG
TGGCGTTGTAGCACCTTTATCTGGAGTAGTGACTGGAACAAGACGACCTCATAA
Gene >OphauG2|7284
ATGCTCGTGCTCGTGCGCGTGCGCGTGCTCATGCTCGAGCCAACCCCCGTCAACCAGCCGCTGACATGGCGCCAA
CCCTCAGTCAATGGCATCAGAAACCCCTTTAGCTATCAGCCGTGGAGGGAAAAGCGCACATTTCAGGTAAGCCCA
GAGACAACTCAACCCAAGTCAACACACCCCCTTGCTGCGCCCCCCAGACGAGTCCTCGCTTACCACGGCAAATAA
AGGCCATGTTCGACATTCTCGAGGCAGACATTGTCGTCCTGCAAGAGACCAAGATCCAGCGCAAAGACCTCGAGG
ATGACATGATTCTCGTCCCGGGCTGGGACGTCTATCTTACTCTCCCCAGGCACAAAAAGGGTAACAGTCTTGGCT
GCCACGAGTCGCAAGCCCAGCCAGACTAACCTTGGCCCGCTCGTCTTGCTTGGCCTCTCCCAGGCTATTCGGGCG
TCGCCATCTACACGCGCAACCAGACCTGCGCCCCAATACGAGCCGAAGAAGGCCTCCTCGGCCTCCTCACCGCCC
CCAAGTCGTCCATCAAGTTTCGCCACTTGCCCAAGCACCAGCAGATTGGCGGATACCCGAGCCCCGACCAACTCT
CGCCCCACGTCGACGAGCTTGACCTCGACTCGGAAGGCCGCTGCCTGCTTGTCGAGTTTCCCGCCTTTGTTCTCA
TGGGCGTCTATTGCCCGGCAATCCGCGATGAGTCGCGCCACAACTTTCGCATCTCCTTTCTCCAGGCCCTCGACG
CCCGCGTCCGCAATCTCCTCGACGCAGGCAAGCAAGTTGTCCTGGCCGGAGACATCAACATTGTTCGCTCCCAAC
TCGACTCGACAAACTTGCAAGAGTCGCTGCGCAAGCAGGCCATGACCATGGACGAGTGGATGTCTCTGCCCGCCA
GGCGCATCTTCAACCAGCTTGTCTTTCCCGACGCCTCCTCGCCTCGGGCTCACCAGCCAGCACAAGGGCCCAGCC
CCGTCTTGTGGGATTTGTGTCGCTGCTTCCATCCAGACCGCCAGGCCATGAATACCTGCTGGGACACCAAGCGCA
ACACACGCCCAGCCAACAATGGCAGCCGCATCGACTACATCCTCTGCACCGACGCGCTCAAGCCCTGGTTCACCG
AGGCTGACATCCAGCCGGGCCTCATGGGCTCCGATCACTGTCCCGTGTTTGCCGTCATGGCTGACAACCTTGCTG
TCGACGGCGCCAGCCTTTCTCTGCCCGACCTGGTCAACCCTGCCGACATGTTTAGCCACGGCGTCCGCATCAGGC
CCTGGGCTTCCAGTGACTGTCTGCCTCTGTCGGCCAGGCTGATTCCCGAGTTTGACCGCCGCCAGAACATCCGCG
ACATGTTCAAAAAGTCTGCTGAGCATCCCTTTGCTCGTCAAGCCTCACAGCCCAAGCGACTACGCTCCTCCTCGC
CGCCACAGCCTCTCACTCTGCCCTCGAAGCGATCCAAGCCTCTGACCCCGCTCGACTCATCCAACAAGACAAAGA
CAAAGACGCCTGCTGGCCAAACGACGCTCCAGGCCTTTCTTGCCAAGCCCGCGCCACCTGCTTCTTGTCCCCGAA
ATTTGCACAAGCCCGCAGCCGATACCCAGAGTCTCACACCAGCCACGCCATCTGCCACCCATGTGCCCCCAGAGC
CTGCTGCCTCGCCAGAACGTGTCTTTGACCCGATAGAGGCAAAAGAGTCATGGTCAAGGCTCTTGGGCAAGCGCA
TCGCTCCCCGCTGCCAACACGGCGAGCCCTGCATCAGTCTCGTCACCAAGAAGCCCGGCATCAACTGCGGTCAGT
CAGCCCCTTGCTCGTAGCACCGACACAAGGTCAAGGCTGCAATCATACAAGAAAGCTGTCTGCTGACATCAAGTC
TCATCCCAGGCCGCTCTTTTTACATTTGCCCTCGTCCGCTTGGGCCGTCGGGCGACAAGGAGAAGGACTCCGAGT
GGCGTTGTAGCACCTTTATCTGGAGTAGTGACTGGAACAAGACGACCTCATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail