Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauG2|7277
Gene name
LocationContig_83:17117..19367
Strand+
Gene length (bp)2250
Transcript length (bp)1782
Coding sequence length (bp)1782
Protein length (aa) 594

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8.0E-08 57 123
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.5E-11 237 309

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P38741|RIM4_YEAST Meiotic activator RIM4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RIM4 PE=1 SV=1 53 217 7.0E-13
sp|Q10277|MSA1_SCHPO Multicopy suppressor of sporulation protein msa1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=msa1 PE=3 SV=1 54 164 3.0E-08

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0003674 molecular_function No
GO:1901363 heterocyclic compound binding No
GO:0005488 binding No
GO:0003676 nucleic acid binding No
GO:0097159 organic cyclic compound binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 53 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauG2|7277
MVGSSEDDDVFTDFSTSINCLHKASSTFGGRTQLAVYQDSRDKVDPQTMYAGSSCMFVANLPQQFSDRKLEEEVT
KVFSQFGIVFVKIKRDGRGMPFAFCQYTNDIDAEKAMTMGKGTVILERPCRTEMARAQSSFIVYKTSGQRIRLSE
ARDLLHRLGDVAKVEYLHEGLRVSASLPQTVVVTYKIQFGQVFANDPNFCVKVYDPKSLSAPENLTVTKPQEGSF
LRQYDRDRRSAYVGNLPPGMTKDLLCSLASSCGEVVEAQLHHKEVLGGHGLKTCFGFLEFSRPDAPDELIAAMNN
TEIDGYRIRVERKQSRLAETPHHTAATTGDSPNARPPVSRPRVGSAELEKSLGGRFGTTPMGSIGATTHRKQYAS
TSYTPGRSRPSRPTILDSTPSPYYDMFEPPHTAYTASPEGIPMASTDNSYLSPPDKKSVDFDLRHMPDTLTGSGG
ATFRDKNHRPSTPMSPDMSTASAMKKLATSFRSELSIVPPPTMPWMATYPHYGYPYMGAPATPQTNAALMYPGYI
QPHVYHPMFDMYGNMMMPPTPIVPSFPGPTFLNDTPARSERGESVLGDESKQSPNKSEKKVSFNHSTL*
Coding >OphauG2|7277
ATGGTTGGCTCTAGTGAAGACGACGACGTTTTCACCGACTTCTCGACTTCTATCAACTGCCTTCATAAAGCTTCT
TCTACCTTTGGTGGTCGCACTCAGCTTGCTGTCTATCAGGACTCGCGCGACAAAGTTGACCCCCAGACGATGTAT
GCAGGGTCCTCGTGCATGTTCGTCGCAAACCTCCCACAGCAATTCAGTGATCGCAAGTTGGAGGAAGAGGTGACC
AAAGTGTTCAGTCAATTTGGTATTGTCTTTGTCAAGATCAAGCGCGACGGTCGAGGCATGCCCTTTGCCTTTTGC
CAATACACGAACGATATTGACGCCGAAAAGGCTATGACCATGGGAAAAGGAACTGTCATTCTTGAGCGACCTTGC
CGCACGGAAATGGCCAGAGCACAGTCTTCATTCATAGTCTACAAAACTTCGGGTCAGCGAATTCGACTCAGTGAA
GCACGAGACCTTCTACACCGGCTTGGAGATGTTGCAAAAGTAGAATATCTCCACGAGGGTCTCCGTGTCTCAGCG
AGCCTTCCGCAGACGGTTGTTGTCACGTACAAGATTCAATTTGGTCAGGTCTTTGCAAACGACCCTAATTTCTGT
GTCAAGGTCTATGATCCCAAATCTTTGTCTGCCCCGGAGAATTTGACTGTTACAAAGCCACAGGAGGGAAGCTTC
CTCAGACAATATGACAGGGACAGGAGATCGGCATATGTTGGTAATCTACCACCTGGTATGACCAAGGATCTTTTA
TGCTCGCTTGCCAGTTCGTGTGGCGAGGTTGTGGAGGCACAGCTCCATCACAAGGAAGTTTTGGGTGGACACGGA
CTCAAAACATGCTTCGGGTTCCTCGAGTTCAGCCGACCGGACGCCCCCGACGAGCTCATTGCGGCAATGAACAAC
ACCGAGATTGACGGCTATCGAATTCGTGTTGAGCGTAAGCAGTCGCGACTGGCTGAGACTCCACATCACACCGCG
GCGACAACGGGCGACTCGCCCAATGCTCGGCCTCCAGTGAGTCGTCCGCGCGTTGGCTCCGCTGAGCTTGAGAAG
TCGCTGGGAGGACGTTTTGGCACGACTCCCATGGGAAGCATTGGCGCGACAACTCATCGCAAACAATATGCTTCG
ACGTCGTATACTCCAGGCCGCAGTCGCCCCTCGCGTCCAACGATTCTCGACTCTACTCCTTCTCCATACTACGAT
ATGTTTGAGCCCCCACACACTGCTTATACAGCCTCTCCTGAGGGCATCCCGATGGCCTCTACCGACAACTCATAC
TTGTCTCCACCGGACAAGAAGTCTGTCGATTTTGATCTGCGCCATATGCCTGACACTTTGACTGGCTCGGGTGGC
GCAACATTTCGCGACAAGAACCATAGGCCATCAACTCCCATGAGCCCAGATATGTCCACCGCATCGGCTATGAAG
AAGCTCGCCACTTCATTTCGCAGCGAGCTGTCTATTGTTCCTCCTCCAACGATGCCTTGGATGGCGACTTATCCG
CACTATGGATATCCGTACATGGGGGCCCCAGCCACGCCTCAAACCAATGCTGCCCTGATGTATCCTGGCTATATA
CAGCCTCATGTCTATCATCCCATGTTTGACATGTACGGCAATATGATGATGCCACCAACCCCCATTGTACCTTCT
TTTCCTGGGCCGACTTTTCTGAACGATACTCCGGCACGATCTGAGCGAGGCGAGTCGGTTTTGGGTGACGAATCG
AAACAATCGCCCAACAAGAGTGAGAAGAAAGTCAGCTTCAATCACTCTACTCTTTAA
Transcript >OphauG2|7277
ATGGTTGGCTCTAGTGAAGACGACGACGTTTTCACCGACTTCTCGACTTCTATCAACTGCCTTCATAAAGCTTCT
TCTACCTTTGGTGGTCGCACTCAGCTTGCTGTCTATCAGGACTCGCGCGACAAAGTTGACCCCCAGACGATGTAT
GCAGGGTCCTCGTGCATGTTCGTCGCAAACCTCCCACAGCAATTCAGTGATCGCAAGTTGGAGGAAGAGGTGACC
AAAGTGTTCAGTCAATTTGGTATTGTCTTTGTCAAGATCAAGCGCGACGGTCGAGGCATGCCCTTTGCCTTTTGC
CAATACACGAACGATATTGACGCCGAAAAGGCTATGACCATGGGAAAAGGAACTGTCATTCTTGAGCGACCTTGC
CGCACGGAAATGGCCAGAGCACAGTCTTCATTCATAGTCTACAAAACTTCGGGTCAGCGAATTCGACTCAGTGAA
GCACGAGACCTTCTACACCGGCTTGGAGATGTTGCAAAAGTAGAATATCTCCACGAGGGTCTCCGTGTCTCAGCG
AGCCTTCCGCAGACGGTTGTTGTCACGTACAAGATTCAATTTGGTCAGGTCTTTGCAAACGACCCTAATTTCTGT
GTCAAGGTCTATGATCCCAAATCTTTGTCTGCCCCGGAGAATTTGACTGTTACAAAGCCACAGGAGGGAAGCTTC
CTCAGACAATATGACAGGGACAGGAGATCGGCATATGTTGGTAATCTACCACCTGGTATGACCAAGGATCTTTTA
TGCTCGCTTGCCAGTTCGTGTGGCGAGGTTGTGGAGGCACAGCTCCATCACAAGGAAGTTTTGGGTGGACACGGA
CTCAAAACATGCTTCGGGTTCCTCGAGTTCAGCCGACCGGACGCCCCCGACGAGCTCATTGCGGCAATGAACAAC
ACCGAGATTGACGGCTATCGAATTCGTGTTGAGCGTAAGCAGTCGCGACTGGCTGAGACTCCACATCACACCGCG
GCGACAACGGGCGACTCGCCCAATGCTCGGCCTCCAGTGAGTCGTCCGCGCGTTGGCTCCGCTGAGCTTGAGAAG
TCGCTGGGAGGACGTTTTGGCACGACTCCCATGGGAAGCATTGGCGCGACAACTCATCGCAAACAATATGCTTCG
ACGTCGTATACTCCAGGCCGCAGTCGCCCCTCGCGTCCAACGATTCTCGACTCTACTCCTTCTCCATACTACGAT
ATGTTTGAGCCCCCACACACTGCTTATACAGCCTCTCCTGAGGGCATCCCGATGGCCTCTACCGACAACTCATAC
TTGTCTCCACCGGACAAGAAGTCTGTCGATTTTGATCTGCGCCATATGCCTGACACTTTGACTGGCTCGGGTGGC
GCAACATTTCGCGACAAGAACCATAGGCCATCAACTCCCATGAGCCCAGATATGTCCACCGCATCGGCTATGAAG
AAGCTCGCCACTTCATTTCGCAGCGAGCTGTCTATTGTTCCTCCTCCAACGATGCCTTGGATGGCGACTTATCCG
CACTATGGATATCCGTACATGGGGGCCCCAGCCACGCCTCAAACCAATGCTGCCCTGATGTATCCTGGCTATATA
CAGCCTCATGTCTATCATCCCATGTTTGACATGTACGGCAATATGATGATGCCACCAACCCCCATTGTACCTTCT
TTTCCTGGGCCGACTTTTCTGAACGATACTCCGGCACGATCTGAGCGAGGCGAGTCGGTTTTGGGTGACGAATCG
AAACAATCGCCCAACAAGAGTGAGAAGAAAGTCAGCTTCAATCACTCTACTCTTTAA
Gene >OphauG2|7277
ATGGTTGGCTCTAGTGAAGACGACGACGTTTTCACCGACTTCTCGACTTCTATCAACTGCCTTCATAAAGCTTCT
TCTACCTTTGGTGGTCGCACTCAGCTTGCTGTCTATCAGGACTCGCGCGACAAAGTTGACCCCCAGACGATGTAT
GCAGGGTCCTCGTGCATGTTCGTCGCAAAGTAGGTTTTTGCAAGCAATTCAAGTTTCACCTGCCTACCTTTGAGC
AATGCTAATAATTTTTTGTAGCCTCCCACAGCAATTCAGTGATCGCAAGTTGGAGGAAGAGGTGACCAAAGTGTT
CAGTCAATTTGGTATTGTCTTTGTCAAGATCAAGCGCGACGGTCGAGGCATGCCCTTTGCCTTTTGCCAATACAC
GGTGAGCCTTTCCAGAGCGGCCGACTTGGTCAAGACGGTCCGCTCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGGAACCACTACTGACACGTTTTAGAACGATATTGACGCCGAAA
AGGCTATGACCATGGGAAAAGGAACTGTCATTCTTGAGCGACCTTGCCGCACGGAAATGGCCAGAGCACAGTGTT
GGTTCAGCATTGAAACTTGTCAATGGAGAAAAAAAGTCACTGACTGAAGAGTCTAGCTTCATTCATAGTCTACAA
AACTTCGGGTCAGCGAATTCGACTCAGTGAAGCACGAGACCTTCTACACCGGCTTGGAGATGTTGCAAAAGTAGA
ATATCTCCACGAGGGTCTCCGTGTCTCAGCGAGCCTTCCGCAGACGGTTGTTGTCACGTACAAGATGTATGACGC
GAAACGTGATCCGCCAAGAGCAAGTCAATCCTTTACCCGTGTGTCATTGACTATCTAATTAACAGTCAATTTGGT
CAGGTCTTTGCAAACGACCCTAATTTCTGTGTCAAGGTCTATGATCCCAAATCTTTGTCTGCCCCGGAGAATTTG
ACTGTTACAAAGCCACAGGAGGGAAGCTTCCTCAGACAATATGACAGGGACAGGAGATCGGCATATGTTGGTAAT
CTACCACCTGGTATGACCAAGGATCTTTTATGCTCGCTTGCCAGTTCGTGTGGCGAGGTTGTGGAGGCACAGCTC
CATCACAAGGAAGTTTTGGGTGGACACGGTAAGCCTTGGTACGTCTATCAATTTGAAGTCAGATTTCTGACATAT
CTTTTAGGACTCAAAACATGCTTCGGGTTCCTCGAGTTCAGCCGACCGGACGCCCCCGACGAGCTCATTGCGGCA
ATGGTCAGTCCAAAGTCTGCGCGCGCGTTGACACTCTTTTTCCGCTGCTTTGAGCGAACGTGATCAAGCTGATTG
TGGTGAGAACAGAACAACACCGAGATTGACGGCTATCGAATTCGTGTTGAGCGTAAGCAGTCGCGACTGGCTGAG
ACTCCACATCACACCGCGGCGACAACGGGCGACTCGCCCAATGCTCGGCCTCCAGTGAGTCGTCCGCGCGTTGGC
TCCGCTGAGCTTGAGAAGTCGCTGGGAGGACGTTTTGGCACGACTCCCATGGGAAGCATTGGCGCGACAACTCAT
CGCAAACAATATGCTTCGACGTCGTATACTCCAGGCCGCAGTCGCCCCTCGCGTCCAACGATTCTCGACTCTACT
CCTTCTCCATACTACGATATGTTTGAGCCCCCACACACTGCTTATACAGCCTCTCCTGAGGGCATCCCGATGGCC
TCTACCGACAACTCATACTTGTCTCCACCGGACAAGAAGTCTGTCGATTTTGATCTGCGCCATATGCCTGACACT
TTGACTGGCTCGGGTGGCGCAACATTTCGCGACAAGAACCATAGGCCATCAACTCCCATGAGCCCAGATATGTCC
ACCGCATCGGCTATGAAGAAGCTCGCCACTTCATTTCGCAGCGAGCTGTCTATTGTTCCTCCTCCAACGATGCCT
TGGATGGCGACTTATCCGCACTATGGATATCCGTACATGGGGGCCCCAGCCACGCCTCAAACCAATGCTGCCCTG
ATGTATCCTGGCTATATACAGCCTCATGTCTATCATCCCATGTTTGACATGTACGGCAATATGATGATGCCACCA
ACCCCCATTGTACCTTCTTTTCCTGGGCCGACTTTTCTGAACGATACTCCGGCACGATCTGAGCGAGGCGAGTCG
GTTTTGGGTGACGAATCGAAACAATCGCCCAACAAGAGTGAGAAGAAAGTCAGCTTCAATCACTCTACTCTTTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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