Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauG2|7274
Gene name
LocationContig_83:3247..3607
Strand-
Gene length (bp)360
Transcript length (bp)360
Coding sequence length (bp)360
Protein length (aa) 120

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF14634 zf-RING_5 zinc-RING finger domain 5.2E-08 33 71
PF13920 zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 5.4E-08 32 72
PF00097 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 1.5E-07 33 70
PF13445 zf-RING_UBOX RING-type zinc-finger 2.3E-07 33 67
PF13923 zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 5.2E-07 33 70

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q4WUA0|CWC24_ASPFU Pre-mRNA-splicing factor cwc24 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cwc24 PE=3 SV=1 28 115 2.0E-37
sp|Q7SDY3|CWC24_NEUCR Pre-mRNA-splicing factor cwc-24 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cwc-24 PE=3 SV=1 1 92 2.0E-33
sp|Q5AVC5|CWC24_EMENI Pre-mRNA-splicing factor cwc24 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cwc24 PE=3 SV=1 1 88 3.0E-31
sp|Q4P400|CWC24_USTMA Pre-mRNA-splicing factor CWC24 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=CWC24 PE=3 SV=1 8 101 2.0E-24
sp|Q9P6R8|CWC24_SCHPO Pre-mRNA-splicing factor cwf24 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwf24 PE=1 SV=1 27 100 6.0E-21
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Swissprot ID Swissprot Description Start End E-value
sp|Q4WUA0|CWC24_ASPFU Pre-mRNA-splicing factor cwc24 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cwc24 PE=3 SV=1 28 115 2.0E-37
sp|Q7SDY3|CWC24_NEUCR Pre-mRNA-splicing factor cwc-24 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cwc-24 PE=3 SV=1 1 92 2.0E-33
sp|Q5AVC5|CWC24_EMENI Pre-mRNA-splicing factor cwc24 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cwc24 PE=3 SV=1 1 88 3.0E-31
sp|Q4P400|CWC24_USTMA Pre-mRNA-splicing factor CWC24 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=CWC24 PE=3 SV=1 8 101 2.0E-24
sp|Q9P6R8|CWC24_SCHPO Pre-mRNA-splicing factor cwf24 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwf24 PE=1 SV=1 27 100 6.0E-21
sp|P0CQ64|CWC24_CRYNJ Pre-mRNA-splicing factor CWC24 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CWC24 PE=3 SV=1 30 84 3.0E-20
sp|P0CQ65|CWC24_CRYNB Pre-mRNA-splicing factor CWC24 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=CWC24 PE=3 SV=1 30 84 3.0E-20
sp|O15541|R113A_HUMAN RING finger protein 113A OS=Homo sapiens GN=RNF113A PE=1 SV=1 27 92 1.0E-18
sp|Q67ER4|R113A_BOVIN RING finger protein 113A OS=Bos taurus GN=RNF113A PE=2 SV=1 27 92 1.0E-18
sp|Q8GX84|C3H1_ARATH Zinc finger CCCH domain-containing protein 1 OS=Arabidopsis thaliana GN=At1g01350 PE=2 SV=2 29 95 2.0E-18
sp|Q9FNG6|C3H51_ARATH Zinc finger CCCH domain-containing protein 51 OS=Arabidopsis thaliana GN=At5g06420 PE=2 SV=1 29 95 3.0E-18
sp|Q752S4|CWC24_ASHGO Pre-mRNA-splicing factor CWC24 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=CWC24 PE=3 SV=1 26 89 2.0E-17
sp|Q8IZP6|R113B_HUMAN RING finger protein 113B OS=Homo sapiens GN=RNF113B PE=1 SV=3 16 90 5.0E-17
sp|Q6K4V3|C3H15_ORYSJ Zinc finger CCCH domain-containing protein 15 OS=Oryza sativa subsp. japonica GN=Os02g0301000 PE=2 SV=1 29 94 2.0E-16
sp|P53769|CWC24_YEAST Pre-mRNA-splicing factor CWC24 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CWC24 PE=1 SV=1 18 92 6.0E-15
sp|O17917|RN113_CAEEL RING finger protein 113 homolog OS=Caenorhabditis elegans GN=rnf-113 PE=2 SV=2 27 90 4.0E-14
sp|Q6CSS6|CWC24_KLULA Pre-mRNA-splicing factor CWC24 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=CWC24 PE=3 SV=1 29 90 6.0E-14
sp|Q6FXX1|CWC24_CANGA Pre-mRNA-splicing factor CWC24 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=CWC24 PE=3 SV=1 18 84 8.0E-14
sp|Q55G16|RN113_DICDI RING finger protein 113 homolog OS=Dictyostelium discoideum GN=rnf113 PE=3 SV=1 29 88 3.0E-12
sp|Q5ACW2|CWC24_CANAL Pre-mRNA-splicing factor CWC24 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CWC24 PE=3 SV=1 27 78 2.0E-11
sp|Q6CB23|CWC24_YARLI Pre-mRNA-splicing factor CWC24 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=CWC24 PE=3 SV=1 29 77 4.0E-11
sp|Q6BYU0|CWC24_DEBHA Pre-mRNA-splicing factor CWC24 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=CWC24 PE=3 SV=2 27 89 7.0E-11
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GO

GO Term Description Terminal node
GO:0046872 metal ion binding Yes
GO:0003674 molecular_function No
GO:0043169 cation binding No
GO:0005488 binding No
GO:0043167 ion binding No

Deeploc

Deeploc data not available for this genome

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup4008
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|7274 (this protein)
Ophiocordyceps australis map64 (Brazil) OphauB2|5078
Ophiocordyceps camponoti-floridani Ophcf2|06126
Ophiocordyceps camponoti-rufipedis Ophun1|6728
Ophiocordyceps kimflemingae Ophio5|6357
Ophiocordyceps subramaniannii Hirsu2|8052

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauG2|7274
MGGTVVASASRDKPKDDDDDDDEAMLDNIPFVCIICREPYKEPIVTRCGHYFCEACALKRYRRDPTCAACGAGTN
GVFNTAKKLQRLLSRKRERAAIRRKKAIEAGEEVSDGDEEEHDN*
Coding >OphauG2|7274
ATGGGTGGCACTGTTGTGGCCAGTGCAAGCCGGGACAAGCCCAAGGACGACGACGACGACGACGACGAAGCCATG
CTAGATAACATTCCTTTTGTCTGCATCATCTGCAGGGAGCCGTACAAGGAGCCGATAGTGACGAGGTGCGGGCAC
TACTTTTGCGAGGCGTGCGCCCTCAAGAGATACAGGCGCGATCCGACTTGCGCCGCATGTGGCGCTGGCACCAAC
GGCGTCTTCAATACAGCCAAGAAACTACAAAGGCTTTTGTCCCGCAAGAGAGAGAGGGCTGCTATTCGTAGAAAG
AAGGCAATTGAAGCCGGTGAGGAAGTAAGTGACGGCGATGAAGAAGAACACGACAATTAA
Transcript >OphauG2|7274
ATGGGTGGCACTGTTGTGGCCAGTGCAAGCCGGGACAAGCCCAAGGACGACGACGACGACGACGACGAAGCCATG
CTAGATAACATTCCTTTTGTCTGCATCATCTGCAGGGAGCCGTACAAGGAGCCGATAGTGACGAGGTGCGGGCAC
TACTTTTGCGAGGCGTGCGCCCTCAAGAGATACAGGCGCGATCCGACTTGCGCCGCATGTGGCGCTGGCACCAAC
GGCGTCTTCAATACAGCCAAGAAACTACAAAGGCTTTTGTCCCGCAAGAGAGAGAGGGCTGCTATTCGTAGAAAG
AAGGCAATTGAAGCCGGTGAGGAAGTAAGTGACGGCGATGAAGAAGAACACGACAATTAA
Gene >OphauG2|7274
ATGGGTGGCACTGTTGTGGCCAGTGCAAGCCGGGACAAGCCCAAGGACGACGACGACGACGACGACGAAGCCATG
CTAGATAACATTCCTTTTGTCTGCATCATCTGCAGGGAGCCGTACAAGGAGCCGATAGTGACGAGGTGCGGGCAC
TACTTTTGCGAGGCGTGCGCCCTCAAGAGATACAGGCGCGATCCGACTTGCGCCGCATGTGGCGCTGGCACCAAC
GGCGTCTTCAATACAGCCAAGAAACTACAAAGGCTTTTGTCCCGCAAGAGAGAGAGGGCTGCTATTCGTAGAAAG
AAGGCAATTGAAGCCGGTGAGGAAGTAAGTGACGGCGATGAAGAAGAACACGACAATTAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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