Protein ID | OphauG2|7239 |
Gene name | |
Location | Contig_820:7474..7982 |
Strand | - |
Gene length (bp) | 508 |
Transcript length (bp) | 306 |
Coding sequence length (bp) | 306 |
Protein length (aa) | 102 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8.9E-14 | 7 | 67 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O59670|SF3B6_SCHPO | Splicing factor 3B subunit 6-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC29A3.07c PE=3 SV=2 | 7 | 100 | 6.0E-33 |
sp|Q9VRV7|SF3B6_DROME | Splicing factor 3B subunit 6-like protein OS=Drosophila melanogaster GN=CG13298 PE=1 SV=1 | 8 | 100 | 3.0E-30 |
sp|Q8ITY4|SF3B6_CAEEL | Splicing factor 3B subunit 6-like protein OS=Caenorhabditis elegans GN=C50D2.5 PE=3 SV=2 | 8 | 100 | 5.0E-30 |
sp|P59708|SF3B6_MOUSE | Splicing factor 3B subunit 6 OS=Mus musculus GN=Sf3b6 PE=1 SV=1 | 7 | 101 | 5.0E-30 |
sp|Q9Y3B4|SF3B6_HUMAN | Splicing factor 3B subunit 6 OS=Homo sapiens GN=SF3B6 PE=1 SV=1 | 7 | 101 | 5.0E-30 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O59670|SF3B6_SCHPO | Splicing factor 3B subunit 6-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC29A3.07c PE=3 SV=2 | 7 | 100 | 6.0E-33 |
sp|Q9VRV7|SF3B6_DROME | Splicing factor 3B subunit 6-like protein OS=Drosophila melanogaster GN=CG13298 PE=1 SV=1 | 8 | 100 | 3.0E-30 |
sp|Q8ITY4|SF3B6_CAEEL | Splicing factor 3B subunit 6-like protein OS=Caenorhabditis elegans GN=C50D2.5 PE=3 SV=2 | 8 | 100 | 5.0E-30 |
sp|P59708|SF3B6_MOUSE | Splicing factor 3B subunit 6 OS=Mus musculus GN=Sf3b6 PE=1 SV=1 | 7 | 101 | 5.0E-30 |
sp|Q9Y3B4|SF3B6_HUMAN | Splicing factor 3B subunit 6 OS=Homo sapiens GN=SF3B6 PE=1 SV=1 | 7 | 101 | 5.0E-30 |
sp|Q9FMP4|SF3B6_ARATH | Splicing factor 3B subunit 6-like protein OS=Arabidopsis thaliana GN=At5g12190 PE=2 SV=1 | 8 | 100 | 3.0E-28 |
sp|Q54J05|RU2B_DICDI | U2 small nuclear ribonucleoprotein B'' OS=Dictyostelium discoideum GN=snrpb2 PE=3 SV=1 | 13 | 89 | 2.0E-08 |
GO Term | Description | Terminal node |
---|---|---|
GO:0003723 | RNA binding | Yes |
GO:0003674 | molecular_function | No |
GO:1901363 | heterocyclic compound binding | No |
GO:0005488 | binding | No |
GO:0003676 | nucleic acid binding | No |
GO:0097159 | organic cyclic compound binding | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 61 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >OphauG2|7239 MLTELCSYHVTPEELFDLFGKFGPIRQVRQGISSTTKGTAFVVYEDVMDAKQACDKLNGFNFQNRYLVVLYHQPE KMIKSREDLEARRESLAQLKKQHGID* |
Coding | >OphauG2|7239 ATGTTGACAGAGCTCTGTTCCTACCACGTCACACCCGAAGAGCTCTTTGATCTCTTTGGCAAGTTTGGCCCAATC CGTCAAGTGCGCCAGGGCATCTCGAGCACCACCAAGGGAACAGCGTTTGTTGTCTACGAGGATGTCATGGATGCC AAGCAAGCTTGCGACAAGCTGAATGGTTTCAACTTTCAGAATCGCTACCTAGTTGTTCTATATCACCAGCCCGAG AAGATGATCAAGTCGAGAGAAGATCTCGAGGCCCGCCGAGAATCTTTAGCCCAACTCAAGAAGCAGCACGGTATT GATTGA |
Transcript | >OphauG2|7239 ATGTTGACAGAGCTCTGTTCCTACCACGTCACACCCGAAGAGCTCTTTGATCTCTTTGGCAAGTTTGGCCCAATC CGTCAAGTGCGCCAGGGCATCTCGAGCACCACCAAGGGAACAGCGTTTGTTGTCTACGAGGATGTCATGGATGCC AAGCAAGCTTGCGACAAGCTGAATGGTTTCAACTTTCAGAATCGCTACCTAGTTGTTCTATATCACCAGCCCGAG AAGATGATCAAGTCGAGAGAAGATCTCGAGGCCCGCCGAGAATCTTTAGCCCAACTCAAGAAGCAGCACGGTATT GATTGA |
Gene | >OphauG2|7239 ATGTTGACAGAGCTCTGTTCGTCAAGAATTTGAGGTGTGCCTCTGCGGACTTGGATTCGATTGGCTCCAAACTGA CTGTTTCCCCTCCATTCCAGCTACCACGTCACACCCGAAGAGCTCTTTGATCTCTTTGGCAAGTTTGGCCCAATC CGGTAAATTTCTCCATCAACTCATCGTTACCTTGACAACATGCTGACGGTCCCTTGTAGTCAAGTGCGCCAGGGC ATCTCGAGCACCACCAAGGGAACAGCGTTTGTTGTCTACGAGGATGTCATGGATGCCAAGCAAGCTTGCGACAAG CTGAATGGTTTCAACTTTCAGAATCGCTACCTAGTTGGTACGTCCCCCTAGTCGTCTCCTCTGTTGCATGCTGTG CCGCCCACGACAATTCTAACGTGTCCCGATAGTTCTATATCACCAGCCCGAGAAGATGATCAAGTCGAGAGAAGA TCTCGAGGCCCGCCGAGAATCTTTAGCCCAACTCAAGAAGCAGCACGGTATTGATTGA |